Wall clock time and date at job start Mon Mar 30 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86790 * 120.00582 * 2 1 4 4 H 1.48504 * 109.47074 * 275.39436 * 3 2 1 5 5 H 1.48502 * 109.47160 * 35.39302 * 3 2 1 6 6 H 1.48498 * 109.47354 * 155.39296 * 3 2 1 7 7 C 1.38818 * 119.99436 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00531 * 339.06872 * 7 2 1 9 9 N 1.36921 * 119.99716 * 159.06143 * 7 2 1 10 10 C 1.46499 * 120.00255 * 317.36513 * 9 7 2 11 11 C 1.50704 * 109.46899 * 264.74356 * 10 9 7 12 12 C 1.38231 * 119.99791 * 271.54330 * 11 10 9 13 13 C 1.38239 * 119.99720 * 179.76771 * 12 11 10 14 14 C 1.38237 * 119.99820 * 0.51001 * 13 12 11 15 15 C 1.38229 * 120.00024 * 359.74021 * 14 13 12 16 16 C 1.38233 * 120.00291 * 0.02562 * 15 14 13 17 17 C 1.38837 * 119.99608 * 137.36301 * 9 7 2 18 18 C 1.39231 * 119.71294 * 5.00155 * 17 9 7 19 19 C 1.38305 * 119.08886 * 180.02562 * 18 17 9 20 20 C 1.38889 * 118.50911 * 0.02562 * 19 18 17 21 21 C 1.38122 * 119.33932 * 0.24856 * 20 19 18 22 22 N 1.31901 * 120.86100 * 359.48156 * 21 20 19 23 23 H 0.97007 * 119.99428 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47085 * 24.74268 * 10 9 7 25 25 H 1.08994 * 109.47155 * 144.74293 * 10 9 7 26 26 H 1.07995 * 120.00291 * 0.02562 * 12 11 10 27 27 H 1.08001 * 120.00116 * 180.23165 * 13 12 11 28 28 H 1.08002 * 119.99524 * 179.72620 * 14 13 12 29 29 H 1.08007 * 119.99829 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.00328 * 179.97438 * 16 15 14 31 31 H 1.08001 * 120.45234 * 359.97438 * 18 17 9 32 32 H 1.08001 * 120.74803 * 179.97438 * 19 18 17 33 33 H 1.08002 * 120.32927 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.57203 * 179.74874 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.3833 2.1120 -1.3939 5 1 1.5089 2.6170 0.8109 6 1 3.5996 1.4097 0.5830 7 6 2.0096 -1.2023 0.0005 8 1 1.5231 -2.1066 0.3351 9 7 3.3110 -1.2417 -0.4232 10 6 3.7147 -0.4988 -1.6196 11 6 3.6804 -1.4153 -2.8154 12 6 4.7962 -2.1610 -3.1468 13 6 4.7632 -3.0054 -4.2408 14 6 3.6179 -3.0960 -5.0096 15 6 2.5039 -2.3465 -4.6812 16 6 2.5352 -1.5058 -3.5843 17 6 4.2481 -1.9857 0.2810 18 6 3.8392 -2.7723 1.3546 19 6 4.7835 -3.5078 2.0474 20 6 6.1101 -3.4320 1.6430 21 6 6.4463 -2.6267 0.5724 22 7 5.5239 -1.9399 -0.0735 23 1 -0.4850 0.8402 0.0004 24 1 3.0286 0.3329 -1.7795 25 1 4.7258 -0.1148 -1.4849 26 1 5.6923 -2.0871 -2.5486 27 1 5.6337 -3.5908 -4.4976 28 1 3.5936 -3.7524 -5.8669 29 1 1.6092 -2.4170 -5.2821 30 1 1.6650 -0.9198 -3.3279 31 1 2.7989 -2.8069 1.6429 32 1 4.4961 -4.1266 2.8846 33 1 6.8718 -3.9937 2.1633 34 1 7.4772 -2.5618 0.2574 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715067032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:42 Heat of formation + Delta-G solvation = 66.780543 kcal Electronic energy + Delta-G solvation = -18291.636833 eV Core-core repulsion = 15575.249603 eV Total energy + Delta-G solvation = -2716.387230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.03044 -39.91508 -37.66697 -34.32397 -33.01163 -32.72570 -31.70145 -30.45576 -27.71695 -26.06518 -23.93483 -23.34373 -22.81614 -21.97748 -19.33675 -18.44697 -17.44088 -17.35135 -16.73191 -16.14003 -15.96654 -15.86113 -15.35893 -15.08044 -14.52373 -14.43669 -14.20445 -14.03721 -13.68696 -13.40903 -13.21690 -13.03542 -12.50288 -12.30676 -12.06204 -11.95435 -11.72241 -11.16076 -10.67305 -10.41615 -10.09663 -9.75143 -9.60234 -8.56386 -8.48076 -6.06785 0.45765 0.56835 0.69358 0.80486 1.17429 1.28637 1.37919 2.14416 2.58094 2.81920 3.08192 3.33175 3.93496 3.94633 4.03545 4.21373 4.27019 4.32983 4.37981 4.54603 4.64324 4.66427 4.75893 4.79263 4.86764 5.15416 5.18372 5.24244 5.37264 5.63005 5.64400 5.65221 5.67807 5.83039 5.95041 6.13729 6.19553 6.66249 7.08517 7.24576 7.78990 8.60304 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.012178 C = 0.007345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.016633 B = 2298.764107 C = 3811.054553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.029 3.971 3 Si 0.925 3.075 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.310 4.310 8 H 0.063 0.937 9 N -0.468 5.468 10 C 0.154 3.846 11 C -0.106 4.106 12 C -0.109 4.109 13 C -0.129 4.129 14 C -0.121 4.121 15 C -0.131 4.131 16 C -0.121 4.121 17 C 0.371 3.629 18 C -0.264 4.264 19 C -0.038 4.038 20 C -0.262 4.262 21 C 0.136 3.864 22 N -0.575 5.575 23 H 0.279 0.721 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.138 0.862 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.892 -4.857 -4.985 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.175 4.175 3 Si 0.751 3.249 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.439 4.439 8 H 0.081 0.919 9 N -0.166 5.166 10 C 0.031 3.969 11 C -0.107 4.107 12 C -0.128 4.128 13 C -0.147 4.147 14 C -0.139 4.139 15 C -0.149 4.149 16 C -0.140 4.140 17 C 0.136 3.864 18 C -0.290 4.290 19 C -0.063 4.063 20 C -0.286 4.286 21 C -0.024 4.024 22 N -0.294 5.294 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.146 0.854 27 H 0.165 0.835 28 H 0.170 0.830 29 H 0.156 0.844 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.164 0.836 33 H 0.173 0.827 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.717 -4.071 -5.792 12.844 hybrid contribution -0.781 0.473 1.068 1.405 sum 9.937 -3.599 -4.723 11.576 Atomic orbital electron populations 1.69884 1.07296 1.28971 1.47646 1.25877 0.95563 1.00777 0.95240 0.86105 0.79506 0.80384 0.78933 1.18494 1.20848 1.19436 1.18548 0.85432 0.94907 1.44998 0.91917 1.42295 1.05690 1.47077 1.21563 1.20476 0.99877 0.92796 0.83718 1.20326 0.94854 0.99721 0.95822 1.21317 0.98093 0.96075 0.97303 1.21455 0.99400 0.98749 0.95089 1.21461 0.92684 0.99318 1.00482 1.21354 0.99764 0.96757 0.96983 1.21159 0.96998 0.99886 0.95972 1.18926 0.87363 0.91241 0.88873 1.21429 1.01009 1.05101 1.01441 1.21526 0.92966 0.94734 0.97117 1.21896 0.96845 1.07126 1.02714 1.22886 0.98323 0.90058 0.91097 1.67176 1.00010 1.27700 1.34564 0.91150 0.92458 0.90350 0.85386 0.83521 0.82988 0.84373 0.88203 0.87398 0.83571 0.82734 0.80470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.96 13.96 21.65 0.30 -51.66 16 2 C 0.03 1.61 5.25 84.87 0.45 2.05 16 3 Si 0.93 43.94 25.22 68.60 1.73 45.67 16 4 H -0.26 -11.58 6.75 99.48 0.67 -10.91 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.31 -17.30 8.83 84.04 0.74 -16.56 16 8 H 0.06 3.85 7.03 -2.91 -0.02 3.83 16 9 N -0.47 -23.40 2.17 -521.94 -1.13 -24.53 16 10 C 0.15 7.03 4.15 85.63 0.36 7.39 16 11 C -0.11 -4.38 5.43 -19.87 -0.11 -4.49 16 12 C -0.11 -3.93 9.52 22.27 0.21 -3.71 16 13 C -0.13 -3.78 10.05 22.27 0.22 -3.56 16 14 C -0.12 -3.36 10.05 22.27 0.22 -3.14 16 15 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16 16 C -0.12 -4.87 9.69 22.27 0.22 -4.65 16 17 C 0.37 17.21 7.31 133.12 0.97 18.18 16 18 C -0.26 -11.53 9.31 22.52 0.21 -11.32 16 19 C -0.04 -1.28 10.17 22.44 0.23 -1.06 16 20 C -0.26 -7.67 10.11 22.40 0.23 -7.45 16 21 C 0.14 4.31 11.18 84.65 0.95 5.25 16 22 N -0.57 -23.22 7.91 -193.23 -1.53 -24.75 16 23 H 0.28 14.95 8.31 -92.70 -0.77 14.18 16 24 H 0.06 2.71 4.08 -2.39 -0.01 2.70 16 25 H 0.08 3.43 7.42 -2.39 -0.02 3.41 16 26 H 0.13 4.55 6.98 -2.91 -0.02 4.53 16 27 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 31 H 0.11 5.13 6.46 -2.91 -0.02 5.11 16 32 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 33 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -64.31 288.00 5.55 -58.76 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 1.06 Total: 23.57 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 5.12 Total: -27.05 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -2.36 Total: -100.94 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.73 Total: 45.67 kcal Total: -64.31 5.55 -58.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715067032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.538 kcal (2) G-P(sol) polarization free energy of solvation -64.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds