Wall clock time and date at job start Mon Mar 30 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00081 * 2 1 4 4 C 1.50695 * 109.47416 * 270.00544 * 3 2 1 5 5 H 1.07999 * 120.00462 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99948 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00185 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46719 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47260 * 119.99738 * 8 6 4 11 11 H 1.48505 * 109.46867 * 240.00061 * 8 6 4 12 12 C 1.39669 * 119.99972 * 180.02562 * 2 1 3 13 13 C 1.38949 * 120.06745 * 359.97438 * 12 2 1 14 14 C 1.38084 * 119.94997 * 179.97438 * 13 12 2 15 15 C 1.38290 * 120.08920 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.93250 * 179.97438 * 15 14 13 17 17 N 1.46896 * 109.46888 * 260.02074 * 16 15 14 18 18 C 1.38387 * 120.13697 * 0.02562 * 15 14 13 19 19 Cl 1.73599 * 119.97517 * 179.97438 * 18 15 14 20 20 C 1.38240 * 120.04414 * 0.25475 * 18 15 14 21 21 H 1.08998 * 109.47030 * 269.99468 * 1 2 3 22 22 H 1.09005 * 109.47437 * 29.99382 * 1 2 3 23 23 H 1.09003 * 109.47265 * 149.99334 * 1 2 3 24 24 H 1.09002 * 109.46911 * 30.01048 * 3 2 1 25 25 H 1.09003 * 109.47234 * 150.00166 * 3 2 1 26 26 H 0.97003 * 119.99944 * 179.97438 * 7 6 4 27 27 H 1.07996 * 120.02659 * 359.97438 * 13 12 2 28 28 H 1.08004 * 119.96056 * 179.97438 * 14 13 12 29 29 H 1.08999 * 109.46867 * 20.02256 * 16 15 14 30 30 H 1.08993 * 109.47267 * 140.02198 * 16 15 14 31 31 H 1.00904 * 111.00057 * 56.04757 * 17 16 15 32 32 H 1.00900 * 111.00009 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.04350 * 179.71617 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0960 -2.2417 6 6 3.1268 2.8775 -1.6726 7 7 3.5542 3.6176 -0.6729 8 14 3.4375 3.4174 -3.4337 9 1 2.8595 2.4174 -4.3672 10 1 2.8004 4.7385 -3.6662 11 1 4.9000 3.5249 -3.6678 12 6 2.1634 -1.2096 -0.0005 13 6 1.4700 -2.4137 -0.0005 14 6 2.1629 -3.6081 -0.0016 15 6 3.5458 -3.6075 -0.0021 16 6 4.2984 -4.9131 -0.0027 17 7 4.7514 -5.2178 1.3610 18 6 4.2400 -2.4103 -0.0011 19 17 5.9760 -2.4144 -0.0011 20 6 3.5520 -1.2113 0.0058 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3634 0.8901 -0.5137 23 1 -0.3634 -0.8899 -0.5139 24 1 1.6085 2.0283 0.5140 25 1 3.1500 1.1384 0.5138 26 1 4.0317 4.4431 -0.8501 27 1 0.3901 -2.4155 0.0003 28 1 1.6241 -4.5442 -0.0012 29 1 3.6432 -5.7100 -0.3545 30 1 5.1618 -4.8345 -0.6633 31 1 3.9749 -5.2322 2.0052 32 1 5.2588 -6.0895 1.3873 33 1 4.0938 -0.2770 0.0113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723163640.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:17 Heat of formation + Delta-G solvation = 21.093226 kcal Electronic energy + Delta-G solvation = -16411.881096 eV Core-core repulsion = 13691.079865 eV Total energy + Delta-G solvation = -2720.801231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.21783 -36.53805 -35.58409 -33.92202 -32.62717 -30.41686 -29.34374 -27.82667 -25.65179 -23.94059 -22.24100 -21.62501 -19.78572 -16.90491 -16.52564 -15.96080 -15.51585 -14.67404 -14.57926 -14.26576 -13.80978 -13.69910 -13.32365 -13.07879 -12.55367 -12.20175 -12.12134 -11.60323 -11.35615 -11.15709 -11.10754 -10.88987 -10.76530 -10.39715 -10.22822 -9.99244 -9.78785 -8.93655 -8.55277 -8.53051 -8.20121 -6.59175 -6.07029 -4.20268 1.81582 2.01328 2.74694 3.24835 3.33199 3.37510 4.04800 4.24165 4.39437 4.87234 5.17089 5.19868 5.23052 5.49577 5.60629 5.73963 5.86040 5.98625 6.09002 6.12376 6.25995 6.35051 6.66655 6.85135 6.91715 7.01641 7.21529 7.28285 7.31777 7.53817 7.77621 8.09410 8.16134 8.33882 8.88073 9.46948 10.93366 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.006573 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.114111 B = 4258.856534 C = 5027.337629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.610 5.610 3 C 0.246 3.754 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.253 3.747 13 C -0.219 4.219 14 C -0.058 4.058 15 C -0.170 4.170 16 C 0.116 3.884 17 N -0.841 5.841 18 C 0.041 3.959 19 Cl -0.077 7.077 20 C -0.184 4.184 21 H 0.038 0.962 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.033 0.967 25 H 0.037 0.963 26 H 0.264 0.736 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.339 0.661 32 H 0.335 0.665 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -14.159 2.393 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.315 5.315 3 C 0.127 3.873 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.144 3.856 13 C -0.243 4.243 14 C -0.077 4.077 15 C -0.174 4.174 16 C -0.014 4.014 17 N -0.370 5.370 18 C 0.013 3.987 19 Cl -0.048 7.048 20 C -0.207 4.207 21 H 0.057 0.943 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.551 -13.069 2.370 13.372 hybrid contribution -0.314 -0.308 -1.102 1.187 sum -1.865 -13.377 1.267 13.566 Atomic orbital electron populations 1.21518 0.81102 1.02145 0.99917 1.47143 1.04575 1.04492 1.75245 1.19357 0.92161 0.78589 0.97226 1.21577 1.36627 1.06524 0.92495 0.92156 1.24956 0.95294 0.96259 0.97453 1.69937 1.38148 1.14369 1.30740 0.86469 0.78148 0.78447 0.84589 1.19711 1.20916 1.20754 1.17749 0.90684 0.86357 0.90817 1.20614 0.99405 0.91168 1.13092 1.20484 0.92404 0.97036 0.97807 1.19095 0.93063 0.93154 1.12102 1.20463 0.97574 0.92725 0.90596 1.58679 1.30752 1.40032 1.07571 1.20362 0.83550 0.93815 1.00987 1.98324 1.10877 1.98860 1.96711 1.20735 0.92805 0.97764 1.09435 0.94339 0.91182 0.92563 0.94931 0.94513 0.92618 0.86259 0.86655 0.95586 0.90556 0.84904 0.85284 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.63 10.19 59.85 0.61 2.24 16 2 N -0.61 -12.74 2.99 -181.00 -0.54 -13.28 16 3 C 0.25 6.10 4.92 -5.20 -0.03 6.08 16 4 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.25 5.01 6.55 -83.79 -0.55 4.47 16 13 C -0.22 -3.64 9.21 -39.37 -0.36 -4.00 16 14 C -0.06 -0.86 9.66 -39.62 -0.38 -1.24 16 15 C -0.17 -2.69 5.40 -104.55 -0.56 -3.25 16 16 C 0.12 1.49 6.32 -4.98 -0.03 1.46 16 17 N -0.84 -9.69 9.61 -11.41 -0.11 -9.80 16 18 C 0.04 0.75 6.31 -39.53 -0.25 0.50 16 19 Cl -0.08 -1.33 27.50 -51.86 -1.43 -2.75 16 20 C -0.18 -3.80 8.99 -39.35 -0.35 -4.15 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 23 H 0.06 0.82 6.20 -51.93 -0.32 0.50 16 24 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 25 H 0.04 0.97 6.18 -51.93 -0.32 0.65 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.12 1.73 6.14 -52.49 -0.32 1.40 16 28 H 0.12 1.36 8.03 -52.48 -0.42 0.94 16 29 H 0.03 0.29 8.00 -51.93 -0.42 -0.13 16 30 H 0.08 1.02 7.35 -51.93 -0.38 0.64 16 31 H 0.34 3.63 8.99 -39.29 -0.35 3.27 16 32 H 0.34 3.03 9.08 -39.29 -0.36 2.67 16 33 H 0.14 3.29 6.13 -52.49 -0.32 2.97 16 LS Contribution 293.15 15.07 4.42 4.42 Total: -1.00 -28.88 293.15 -8.29 -37.18 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.02 Total: 3.81 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -2.33 Total: -11.03 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.09 Total: -47.91 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.43 Total: -2.75 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.88 -8.29 -37.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723163640.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.271 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds