Wall clock time and date at job start Mon Mar 30 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00081 * 2 1 4 4 C 1.50695 * 109.47416 * 270.00544 * 3 2 1 5 5 H 1.07999 * 120.00462 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99948 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00185 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46719 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47260 * 119.99738 * 8 6 4 11 11 H 1.48505 * 109.46867 * 240.00061 * 8 6 4 12 12 C 1.39669 * 119.99972 * 180.02562 * 2 1 3 13 13 C 1.38949 * 120.06745 * 359.97438 * 12 2 1 14 14 C 1.38084 * 119.94997 * 179.97438 * 13 12 2 15 15 C 1.38290 * 120.08920 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.93250 * 179.97438 * 15 14 13 17 17 N 1.46896 * 109.46888 * 260.02074 * 16 15 14 18 18 C 1.38387 * 120.13697 * 0.02562 * 15 14 13 19 19 Cl 1.73599 * 119.97517 * 179.97438 * 18 15 14 20 20 C 1.38240 * 120.04414 * 0.25475 * 18 15 14 21 21 H 1.08998 * 109.47030 * 269.99468 * 1 2 3 22 22 H 1.09005 * 109.47437 * 29.99382 * 1 2 3 23 23 H 1.09003 * 109.47265 * 149.99334 * 1 2 3 24 24 H 1.09002 * 109.46911 * 30.01048 * 3 2 1 25 25 H 1.09003 * 109.47234 * 150.00166 * 3 2 1 26 26 H 0.97003 * 119.99944 * 179.97438 * 7 6 4 27 27 H 1.07996 * 120.02659 * 359.97438 * 13 12 2 28 28 H 1.08004 * 119.96056 * 179.97438 * 14 13 12 29 29 H 1.08999 * 109.46867 * 20.02256 * 16 15 14 30 30 H 1.08993 * 109.47267 * 140.02198 * 16 15 14 31 31 H 1.00904 * 111.00057 * 56.04757 * 17 16 15 32 32 H 1.00900 * 111.00009 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.04350 * 179.71617 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0980 1.0960 -2.2417 6 6 3.1268 2.8775 -1.6726 7 7 3.5542 3.6176 -0.6729 8 14 3.4375 3.4174 -3.4337 9 1 2.8595 2.4174 -4.3672 10 1 2.8004 4.7385 -3.6662 11 1 4.9000 3.5249 -3.6678 12 6 2.1634 -1.2096 -0.0005 13 6 1.4700 -2.4137 -0.0005 14 6 2.1629 -3.6081 -0.0016 15 6 3.5458 -3.6075 -0.0021 16 6 4.2984 -4.9131 -0.0027 17 7 4.7514 -5.2178 1.3610 18 6 4.2400 -2.4103 -0.0011 19 17 5.9760 -2.4144 -0.0011 20 6 3.5520 -1.2113 0.0058 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3634 0.8901 -0.5137 23 1 -0.3634 -0.8899 -0.5139 24 1 1.6085 2.0283 0.5140 25 1 3.1500 1.1384 0.5138 26 1 4.0317 4.4431 -0.8501 27 1 0.3901 -2.4155 0.0003 28 1 1.6241 -4.5442 -0.0012 29 1 3.6432 -5.7100 -0.3545 30 1 5.1618 -4.8345 -0.6633 31 1 3.9749 -5.2322 2.0052 32 1 5.2588 -6.0895 1.3873 33 1 4.0938 -0.2770 0.0113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723163640.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:17 Heat of formation + Delta-G solvation = 2.601521 kcal Electronic energy + Delta-G solvation = -16412.682956 eV Core-core repulsion = 13691.079865 eV Total energy + Delta-G solvation = -2721.603091 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60189 -37.97601 -36.96023 -35.26749 -34.47445 -31.82034 -30.71942 -29.55243 -27.08934 -25.54853 -23.65258 -23.09889 -21.19720 -18.66369 -18.29242 -17.17729 -16.95152 -16.30638 -15.94687 -15.59691 -15.24048 -15.04101 -14.74980 -14.42575 -14.13117 -13.77832 -13.30970 -13.20510 -13.08252 -12.80053 -12.61023 -12.47957 -12.36703 -12.16940 -11.71507 -11.66388 -11.50280 -10.65861 -10.45742 -9.58665 -9.42945 -8.39473 -7.89387 -6.38592 0.43607 0.66890 1.35241 1.36067 1.37601 1.49099 2.32917 2.58043 2.89155 3.05733 3.89937 4.02275 4.08951 4.27776 4.40616 4.49125 4.63870 4.71219 4.78516 4.87914 4.93263 4.97505 5.08286 5.18324 5.38465 5.48758 5.63539 5.66589 5.93617 6.04849 6.37433 6.42318 6.77599 6.79259 6.83788 7.33224 8.82434 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.006573 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.114111 B = 4258.856534 C = 5027.337629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.626 5.626 3 C 0.264 3.736 4 C -0.540 4.540 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.926 5.926 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.226 3.774 13 C -0.209 4.209 14 C -0.046 4.046 15 C -0.161 4.161 16 C 0.120 3.880 17 N -0.851 5.851 18 C 0.027 3.973 19 Cl -0.077 7.077 20 C -0.215 4.215 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.013 0.987 25 H 0.008 0.992 26 H 0.267 0.733 27 H 0.147 0.853 28 H 0.162 0.838 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.345 0.655 32 H 0.351 0.649 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.270 -16.851 1.695 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.333 5.333 3 C 0.142 3.858 4 C -0.579 4.579 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.566 5.566 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.198 1.198 11 H -0.205 1.205 12 C 0.120 3.880 13 C -0.231 4.231 14 C -0.065 4.065 15 C -0.165 4.165 16 C -0.011 4.011 17 N -0.383 5.383 18 C -0.001 4.001 19 Cl -0.048 7.048 20 C -0.239 4.239 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.102 0.898 24 H 0.031 0.969 25 H 0.026 0.974 26 H 0.076 0.924 27 H 0.165 0.835 28 H 0.179 0.821 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.728 -15.808 1.679 16.129 hybrid contribution 0.081 0.393 -0.831 0.923 sum -2.647 -15.415 0.848 15.664 Atomic orbital electron populations 1.21679 0.78729 1.02937 1.01318 1.46987 1.05921 1.03452 1.76896 1.18815 0.91086 0.80313 0.95559 1.21785 1.36407 1.06476 0.93257 0.93078 1.25771 0.95060 0.96383 1.01409 1.70043 1.38945 1.14861 1.32773 0.85476 0.77964 0.78301 0.79771 1.19336 1.19810 1.20541 1.18032 0.90522 0.87134 0.92359 1.20947 1.00777 0.90177 1.11232 1.20983 0.91993 0.98184 0.95358 1.19562 0.93905 0.93419 1.09606 1.20437 0.97551 0.91774 0.91296 1.58574 1.31331 1.41400 1.07012 1.20548 0.83771 0.94139 1.01635 1.98314 1.10868 1.98876 1.96735 1.20558 0.93657 0.97145 1.12492 0.92547 0.92322 0.89794 0.96868 0.97360 0.92394 0.83538 0.82077 0.92618 0.91372 0.84163 0.83486 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.12 10.19 127.77 1.30 4.42 16 2 N -0.63 -26.63 2.99 -726.57 -2.17 -28.80 16 3 C 0.26 13.81 4.92 85.63 0.42 14.23 16 4 C -0.54 -30.34 9.39 25.60 0.24 -30.10 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.74 5.46 84.65 0.46 1.20 16 7 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 C 0.23 8.97 6.55 38.21 0.25 9.22 16 13 C -0.21 -6.29 9.21 22.40 0.21 -6.08 16 14 C -0.05 -1.17 9.66 22.25 0.21 -0.96 16 15 C -0.16 -4.66 5.40 -19.81 -0.11 -4.77 16 16 C 0.12 2.65 6.32 85.56 0.54 3.19 16 17 N -0.85 -17.03 9.61 -190.01 -1.83 -18.85 16 18 C 0.03 0.98 6.31 22.31 0.14 1.12 16 19 Cl -0.08 -2.68 27.50 -2.72 -0.07 -2.76 16 20 C -0.21 -9.21 8.99 22.42 0.20 -9.00 16 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 2.01 8.07 -2.38 -0.02 1.99 16 23 H 0.08 2.22 6.20 -2.39 -0.01 2.21 16 24 H 0.01 0.73 8.07 -2.39 -0.02 0.71 16 25 H 0.01 0.48 6.18 -2.39 -0.01 0.47 16 26 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 27 H 0.15 3.58 6.14 -2.91 -0.02 3.57 16 28 H 0.16 2.71 8.03 -2.91 -0.02 2.69 16 29 H 0.06 0.94 8.00 -2.39 -0.02 0.92 16 30 H 0.07 1.65 7.35 -2.39 -0.02 1.63 16 31 H 0.35 6.21 8.99 -89.69 -0.81 5.41 16 32 H 0.35 5.23 9.08 -89.69 -0.81 4.42 16 33 H 0.10 5.12 6.13 -2.91 -0.02 5.11 16 Total: -1.00 -64.96 293.15 1.63 -63.32 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -0.48 Total: 12.73 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 3.87 Total: -17.53 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -3.71 Total: -102.22 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -2.68 SS G_CDS: -0.07 Total: -2.76 kcal Total: -64.96 1.63 -63.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723163640.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.925 kcal (2) G-P(sol) polarization free energy of solvation -64.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds