Wall clock time and date at job start Mon Mar 30 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 111.00080 * 2 1 4 4 C 1.50690 * 109.47245 * 66.05091 * 3 2 1 5 5 H 1.08004 * 120.00169 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00029 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99804 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00009 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46945 * 90.00234 * 8 6 4 10 10 H 1.48495 * 109.47051 * 210.00373 * 8 6 4 11 11 H 1.48501 * 109.46874 * 330.00427 * 8 6 4 12 12 C 1.39751 * 110.99231 * 236.04586 * 2 1 3 13 13 C 1.39035 * 120.08001 * 63.95869 * 12 2 1 14 14 Cl 1.73599 * 120.04562 * 359.73868 * 13 12 2 15 15 C 1.38170 * 119.90753 * 179.72172 * 13 12 2 16 16 C 1.38316 * 120.06104 * 0.02562 * 15 13 12 17 17 C 1.38251 * 120.15551 * 359.97438 * 16 15 13 18 18 C 1.38156 * 120.09563 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.03373 * 180.02562 * 18 17 16 20 20 N 1.46898 * 109.47162 * 260.00152 * 19 18 17 21 21 H 1.08995 * 109.47125 * 183.95514 * 1 2 3 22 22 H 1.09003 * 109.46703 * 303.95324 * 1 2 3 23 23 H 1.08996 * 109.47446 * 63.94630 * 1 2 3 24 24 H 1.09003 * 109.46705 * 186.05111 * 3 2 1 25 25 H 1.09006 * 109.46934 * 306.04830 * 3 2 1 26 26 H 0.97002 * 119.99705 * 179.97438 * 7 6 4 27 27 H 1.07993 * 119.96695 * 180.02562 * 15 13 12 28 28 H 1.07990 * 119.92174 * 179.97438 * 16 15 13 29 29 H 1.08000 * 119.95111 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.46954 * 19.99756 * 19 18 17 31 31 H 1.08992 * 109.47637 * 139.99673 * 19 18 17 32 32 H 1.00901 * 110.99943 * 179.97438 * 20 19 18 33 33 H 1.00898 * 110.99849 * 303.94771 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2984 5 1 1.0741 1.5114 2.0485 6 6 2.0270 3.3494 1.5284 7 7 1.7147 3.9389 2.6618 8 14 3.0001 4.2761 0.2308 9 1 2.0634 4.9798 -0.6817 10 1 3.8865 5.2677 0.8912 11 1 3.8239 3.3174 -0.5486 12 6 1.9697 -0.7287 -1.0823 13 6 1.7262 -0.3012 -2.3826 14 17 0.7937 1.1356 -2.6649 15 6 2.2278 -1.0212 -3.4499 16 6 2.9706 -2.1661 -3.2253 17 6 3.2143 -2.5936 -1.9334 18 6 2.7168 -1.8780 -0.8614 19 6 2.9837 -2.3449 0.5463 20 7 1.8047 -3.0562 1.0582 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5740 0.8525 23 1 -0.3634 0.4513 -0.9232 24 1 3.0798 1.3443 -0.1083 25 1 1.5611 1.9273 -0.8309 26 1 1.9893 4.8550 2.8238 27 1 2.0396 -0.6897 -4.4603 28 1 3.3612 -2.7274 -4.0612 29 1 3.7951 -3.4879 -1.7618 30 1 3.8427 -3.0160 0.5498 31 1 3.1927 -1.4841 1.1813 32 1 1.9590 -3.3800 2.0013 33 1 0.9810 -2.4759 1.0049 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723168077.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:20 Heat of formation + Delta-G solvation = 34.463345 kcal Electronic energy + Delta-G solvation = -17081.059947 eV Core-core repulsion = 14360.838488 eV Total energy + Delta-G solvation = -2720.221459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83624 -36.49023 -36.01455 -34.33738 -32.51564 -30.26531 -29.64052 -27.83493 -25.18121 -24.42768 -22.48661 -20.97321 -20.23204 -17.15238 -16.61379 -15.83872 -15.59731 -15.03484 -14.62266 -14.12907 -14.09638 -13.68112 -13.40512 -13.16860 -12.93028 -12.39790 -12.07007 -11.80846 -11.42856 -11.18786 -11.06471 -10.91640 -10.67484 -10.56460 -10.26142 -9.88205 -9.33681 -8.69569 -8.61409 -8.35570 -8.25596 -7.51943 -6.08468 -4.04987 1.33756 1.43007 2.39242 3.26900 3.34394 3.38579 3.75071 4.40154 4.56704 4.86097 4.99445 5.14396 5.24825 5.37732 5.42024 5.60105 5.80163 5.84760 6.06790 6.16891 6.22644 6.35871 6.46597 6.60786 6.73089 6.82600 6.93146 6.99116 7.37253 7.56558 7.69853 7.75791 8.03029 8.60659 8.97989 9.53284 11.04399 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.008961 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.013181 B = 3124.036312 C = 3749.849341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.497 5.497 3 C 0.150 3.850 4 C -0.507 4.507 5 H 0.081 0.919 6 C 0.072 3.928 7 N -0.899 5.899 8 Si 0.868 3.132 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.125 3.875 13 C -0.072 4.072 14 Cl -0.059 7.059 15 C -0.110 4.110 16 C -0.125 4.125 17 C -0.097 4.097 18 C -0.057 4.057 19 C 0.111 3.889 20 N -0.845 5.845 21 H 0.048 0.952 22 H 0.086 0.914 23 H 0.037 0.963 24 H 0.024 0.976 25 H 0.016 0.984 26 H 0.264 0.736 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.338 0.662 33 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -11.730 -10.131 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.218 5.218 3 C 0.026 3.974 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.130 4.130 7 N -0.539 5.539 8 Si 0.695 3.305 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.028 3.972 13 C -0.101 4.101 14 Cl -0.030 7.030 15 C -0.129 4.129 16 C -0.144 4.144 17 C -0.117 4.117 18 C -0.058 4.058 19 C -0.019 4.019 20 N -0.375 5.375 21 H 0.067 0.933 22 H 0.105 0.895 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.539 -12.135 -10.173 15.910 hybrid contribution 0.192 2.004 -0.751 2.149 sum 1.731 -10.131 -10.925 15.000 Atomic orbital electron populations 1.22512 0.86368 1.00449 1.02896 1.59779 1.08194 1.17184 1.36632 1.20548 0.95163 0.82982 0.98717 1.20945 1.35625 0.97167 1.00744 0.90145 1.24821 0.95687 0.97285 0.95216 1.69881 1.46881 1.13272 1.23819 0.86956 0.80879 0.80274 0.82375 1.20192 1.21094 1.19034 1.18994 0.96074 0.94098 0.87987 1.22046 1.00876 0.91514 0.95687 1.98347 1.71566 1.37167 1.95888 1.20949 0.98563 0.95561 0.97865 1.20968 0.99760 0.96546 0.97094 1.21034 0.99617 0.99175 0.91838 1.19702 0.96904 0.93214 0.96011 1.20484 0.93048 0.96991 0.91413 1.58927 1.05965 1.44782 1.27778 0.93319 0.89538 0.94511 0.95828 0.96655 0.92647 0.85598 0.85550 0.85527 0.91295 0.92399 0.85057 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.98 60.07 0.54 1.00 16 2 N -0.50 -10.14 3.71 -180.29 -0.67 -10.81 16 3 C 0.15 3.62 3.27 -4.98 -0.02 3.61 16 4 C -0.51 -14.11 9.01 -34.44 -0.31 -14.42 16 5 H 0.08 2.41 7.37 -52.48 -0.39 2.02 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 8 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 12 C 0.12 2.27 4.66 -83.73 -0.39 1.88 16 13 C -0.07 -1.24 5.96 -39.31 -0.23 -1.48 16 14 Cl -0.06 -1.05 22.75 -51.86 -1.18 -2.23 16 15 C -0.11 -1.56 9.82 -39.58 -0.39 -1.95 16 16 C -0.13 -1.57 10.04 -39.55 -0.40 -1.96 16 17 C -0.10 -1.30 9.66 -39.61 -0.38 -1.68 16 18 C -0.06 -0.90 5.41 -104.43 -0.56 -1.47 16 19 C 0.11 1.66 6.54 -4.98 -0.03 1.63 16 20 N -0.84 -11.77 9.61 -11.41 -0.11 -11.88 16 21 H 0.05 0.80 7.37 -51.93 -0.38 0.42 16 22 H 0.09 1.79 6.76 -51.93 -0.35 1.44 16 23 H 0.04 0.69 5.12 -51.93 -0.27 0.42 16 24 H 0.02 0.60 7.12 -51.93 -0.37 0.23 16 25 H 0.02 0.38 4.40 -51.93 -0.23 0.15 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.13 1.37 8.04 -52.49 -0.42 0.95 16 30 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 31 H 0.06 1.01 7.79 -51.93 -0.40 0.60 16 32 H 0.34 4.04 9.08 -39.29 -0.36 3.69 16 33 H 0.35 5.24 7.95 -39.29 -0.31 4.93 16 LS Contribution 280.52 15.07 4.23 4.23 Total: -1.00 -30.09 280.52 -7.81 -37.90 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -3.91 Total: 5.15 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -2.28 Total: -12.88 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.00 Total: -49.24 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.18 Total: -2.23 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.09 -7.81 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723168077.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.362 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds