Wall clock time and date at job start Mon Mar 30 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 111.00080 * 2 1 4 4 C 1.50690 * 109.47245 * 66.05091 * 3 2 1 5 5 H 1.08004 * 120.00169 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00029 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99804 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00009 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46945 * 90.00234 * 8 6 4 10 10 H 1.48495 * 109.47051 * 210.00373 * 8 6 4 11 11 H 1.48501 * 109.46874 * 330.00427 * 8 6 4 12 12 C 1.39751 * 110.99231 * 236.04586 * 2 1 3 13 13 C 1.39035 * 120.08001 * 63.95869 * 12 2 1 14 14 Cl 1.73599 * 120.04562 * 359.73868 * 13 12 2 15 15 C 1.38170 * 119.90753 * 179.72172 * 13 12 2 16 16 C 1.38316 * 120.06104 * 0.02562 * 15 13 12 17 17 C 1.38251 * 120.15551 * 359.97438 * 16 15 13 18 18 C 1.38156 * 120.09563 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.03373 * 180.02562 * 18 17 16 20 20 N 1.46898 * 109.47162 * 260.00152 * 19 18 17 21 21 H 1.08995 * 109.47125 * 183.95514 * 1 2 3 22 22 H 1.09003 * 109.46703 * 303.95324 * 1 2 3 23 23 H 1.08996 * 109.47446 * 63.94630 * 1 2 3 24 24 H 1.09003 * 109.46705 * 186.05111 * 3 2 1 25 25 H 1.09006 * 109.46934 * 306.04830 * 3 2 1 26 26 H 0.97002 * 119.99705 * 179.97438 * 7 6 4 27 27 H 1.07993 * 119.96695 * 180.02562 * 15 13 12 28 28 H 1.07990 * 119.92174 * 179.97438 * 16 15 13 29 29 H 1.08000 * 119.95111 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.46954 * 19.99756 * 19 18 17 31 31 H 1.08992 * 109.47637 * 139.99673 * 19 18 17 32 32 H 1.00901 * 110.99943 * 179.97438 * 20 19 18 33 33 H 1.00898 * 110.99849 * 303.94771 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2984 5 1 1.0741 1.5114 2.0485 6 6 2.0270 3.3494 1.5284 7 7 1.7147 3.9389 2.6618 8 14 3.0001 4.2761 0.2308 9 1 2.0634 4.9798 -0.6817 10 1 3.8865 5.2677 0.8912 11 1 3.8239 3.3174 -0.5486 12 6 1.9697 -0.7287 -1.0823 13 6 1.7262 -0.3012 -2.3826 14 17 0.7937 1.1356 -2.6649 15 6 2.2278 -1.0212 -3.4499 16 6 2.9706 -2.1661 -3.2253 17 6 3.2143 -2.5936 -1.9334 18 6 2.7168 -1.8780 -0.8614 19 6 2.9837 -2.3449 0.5463 20 7 1.8047 -3.0562 1.0582 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5740 0.8525 23 1 -0.3634 0.4513 -0.9232 24 1 3.0798 1.3443 -0.1083 25 1 1.5611 1.9273 -0.8309 26 1 1.9893 4.8550 2.8238 27 1 2.0396 -0.6897 -4.4603 28 1 3.3612 -2.7274 -4.0612 29 1 3.7951 -3.4879 -1.7618 30 1 3.8427 -3.0160 0.5498 31 1 3.1927 -1.4841 1.1813 32 1 1.9590 -3.3800 2.0013 33 1 0.9810 -2.4759 1.0049 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723168077.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:20 Heat of formation + Delta-G solvation = 13.432725 kcal Electronic energy + Delta-G solvation = -17081.971903 eV Core-core repulsion = 14360.838488 eV Total energy + Delta-G solvation = -2721.133415 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10096 -37.83307 -37.43200 -35.49895 -34.65095 -31.38593 -31.08993 -29.63940 -26.70829 -25.67753 -24.05642 -22.34577 -21.61830 -19.11805 -17.92581 -17.17744 -16.90593 -16.61702 -16.17357 -15.54025 -15.33653 -15.20349 -14.86179 -14.54941 -14.42434 -14.22988 -13.33635 -13.14412 -12.95285 -12.90081 -12.59909 -12.22422 -12.14996 -11.98459 -11.93454 -11.87072 -11.43546 -10.81174 -9.84700 -9.56827 -9.44704 -9.10854 -8.31647 -6.32221 0.18024 0.28460 1.12725 1.27976 1.29505 1.40127 2.29425 2.62867 3.01181 3.10673 3.73040 4.00436 4.02636 4.20821 4.35238 4.43968 4.54647 4.65591 4.71007 4.79858 4.86154 4.98105 5.08337 5.13166 5.27742 5.37016 5.48267 5.59339 5.81341 5.94032 6.21526 6.25862 6.59820 6.70364 6.73360 7.29515 8.84611 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.008961 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.013181 B = 3124.036312 C = 3749.849341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.500 5.500 3 C 0.165 3.835 4 C -0.507 4.507 5 H 0.044 0.956 6 C 0.016 3.984 7 N -0.944 5.944 8 Si 0.930 3.070 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.256 1.256 12 C 0.089 3.911 13 C -0.091 4.091 14 Cl -0.076 7.076 15 C -0.109 4.109 16 C -0.107 4.107 17 C -0.091 4.091 18 C -0.069 4.069 19 C 0.114 3.886 20 N -0.839 5.839 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.039 0.961 24 H 0.010 0.990 25 H 0.020 0.980 26 H 0.266 0.734 27 H 0.149 0.851 28 H 0.170 0.830 29 H 0.159 0.841 30 H 0.095 0.905 31 H 0.023 0.977 32 H 0.347 0.653 33 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 -13.597 -12.842 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.221 5.221 3 C 0.039 3.961 4 C -0.545 4.545 5 H 0.062 0.938 6 C -0.182 4.182 7 N -0.585 5.585 8 Si 0.754 3.246 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.180 1.180 12 C -0.007 4.007 13 C -0.119 4.119 14 Cl -0.047 7.047 15 C -0.129 4.129 16 C -0.125 4.125 17 C -0.110 4.110 18 C -0.070 4.070 19 C -0.016 4.016 20 N -0.369 5.369 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.028 0.972 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.167 0.833 28 H 0.188 0.812 29 H 0.177 0.823 30 H 0.113 0.887 31 H 0.041 0.959 32 H 0.160 0.840 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.960 -14.033 -12.890 19.283 hybrid contribution -0.259 2.415 0.090 2.431 sum 2.701 -11.617 -12.800 17.496 Atomic orbital electron populations 1.22431 0.86102 1.01422 1.01647 1.59550 1.08560 1.15103 1.38844 1.20219 0.94254 0.85208 0.96413 1.21171 1.34504 0.97269 1.01582 0.93800 1.25639 0.96898 0.98350 0.97285 1.70019 1.48634 1.13862 1.25964 0.85958 0.79687 0.79087 0.79843 1.19303 1.20337 1.17978 1.19084 0.98487 0.95446 0.87649 1.22184 1.01890 0.91633 0.96236 1.98332 1.72139 1.38442 1.95796 1.21296 0.97915 0.95617 0.98049 1.21478 0.97558 0.95412 0.98076 1.21431 0.98686 0.99549 0.91353 1.19925 0.96876 0.93000 0.97213 1.20463 0.94155 0.96296 0.90705 1.58963 1.05334 1.44003 1.28581 0.90962 0.92384 0.94249 0.97190 0.96253 0.92448 0.83342 0.81249 0.82300 0.88705 0.95891 0.83975 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.19 8.98 127.69 1.15 2.34 16 2 N -0.50 -20.75 3.71 -724.31 -2.69 -23.44 16 3 C 0.16 8.08 3.27 85.55 0.28 8.36 16 4 C -0.51 -29.37 9.01 25.60 0.23 -29.14 16 5 H 0.04 2.80 7.37 -2.91 -0.02 2.77 16 6 C 0.02 0.94 5.47 84.66 0.46 1.40 16 7 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 8 Si 0.93 45.28 27.47 68.60 1.88 47.16 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 12 C 0.09 3.16 4.66 38.21 0.18 3.34 16 13 C -0.09 -2.97 5.96 22.44 0.13 -2.83 16 14 Cl -0.08 -2.66 22.75 -2.72 -0.06 -2.72 16 15 C -0.11 -2.70 9.82 22.27 0.22 -2.48 16 16 C -0.11 -2.13 10.04 22.29 0.22 -1.90 16 17 C -0.09 -2.04 9.66 22.25 0.22 -1.82 16 18 C -0.07 -2.04 5.41 -19.74 -0.11 -2.15 16 19 C 0.11 3.27 6.54 85.56 0.56 3.83 16 20 N -0.84 -22.45 9.61 -190.01 -1.83 -24.28 16 21 H 0.07 2.42 7.37 -2.39 -0.02 2.40 16 22 H 0.06 2.55 6.76 -2.39 -0.02 2.53 16 23 H 0.04 1.50 5.12 -2.39 -0.01 1.49 16 24 H 0.01 0.52 7.12 -2.39 -0.02 0.50 16 25 H 0.02 0.96 4.40 -2.38 -0.01 0.95 16 26 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 27 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 28 H 0.17 1.96 8.06 -2.92 -0.02 1.94 16 29 H 0.16 2.52 8.04 -2.91 -0.02 2.50 16 30 H 0.09 2.18 8.00 -2.38 -0.02 2.16 16 31 H 0.02 0.81 7.79 -2.39 -0.02 0.79 16 32 H 0.35 8.00 9.08 -89.69 -0.81 7.19 16 33 H 0.34 10.13 7.95 -89.70 -0.71 9.41 16 Total: -1.00 -67.12 280.52 0.72 -66.40 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.44 Total: 16.80 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.54 Total: -21.06 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -4.21 Total: -106.58 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.06 Total: -2.72 kcal Total: -67.12 0.72 -66.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723168077.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.836 kcal (2) G-P(sol) polarization free energy of solvation -67.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds