Wall clock time and date at job start Mon Mar 30 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00124 * 2 1 4 4 C 1.50706 * 109.46577 * 66.04630 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72326 * 4 3 2 6 6 C 1.37879 * 119.99394 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.39671 * 111.00317 * 236.04813 * 2 1 3 13 13 C 1.38911 * 120.06892 * 63.67884 * 12 2 1 14 14 C 1.38199 * 119.91305 * 179.72277 * 13 12 2 15 15 Cl 1.73605 * 119.97447 * 180.27622 * 14 13 12 16 16 C 1.38421 * 120.04684 * 0.55702 * 14 13 12 17 17 C 1.38238 * 120.14086 * 359.71443 * 16 14 13 18 18 C 1.38132 * 120.08541 * 0.02562 * 17 16 14 19 19 C 1.50701 * 120.02668 * 179.97438 * 18 17 16 20 20 N 1.46901 * 109.47327 * 260.02646 * 19 18 17 21 21 H 1.09007 * 109.47149 * 60.00173 * 1 2 3 22 22 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47669 * 299.99609 * 1 2 3 24 24 H 1.09000 * 109.47263 * 306.04831 * 3 2 1 25 25 H 1.09001 * 109.47582 * 186.04110 * 3 2 1 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.08002 * 120.04237 * 359.97438 * 13 12 2 28 28 H 1.08002 * 119.92967 * 179.70426 * 16 14 13 29 29 H 1.07998 * 119.96336 * 179.97438 * 17 16 14 30 30 H 1.08997 * 109.46563 * 20.02636 * 19 18 17 31 31 H 1.09005 * 109.46975 * 140.02276 * 19 18 17 32 32 H 1.00901 * 110.99782 * 180.02562 * 20 19 18 33 33 H 1.00903 * 110.99757 * 303.94815 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0470 1.2985 5 1 1.0703 1.5127 2.0468 6 6 2.0267 3.3494 1.5286 7 7 2.7110 4.0022 0.6147 8 14 1.5829 4.1866 3.1384 9 1 0.8156 3.2440 3.9915 10 1 2.8248 4.5942 3.8432 11 1 0.7548 5.3875 2.8599 12 6 1.9695 -0.7282 -1.0816 13 6 1.7214 -0.3040 -2.3809 14 6 2.2231 -1.0238 -3.4486 15 17 1.9200 -0.4911 -5.0728 16 6 2.9622 -2.1724 -3.2240 17 6 3.2057 -2.5997 -1.9320 18 6 2.7115 -1.8815 -0.8605 19 6 2.9772 -2.3488 0.5474 20 7 1.7959 -3.0557 1.0599 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8899 24 1 1.5611 1.9274 -0.8309 25 1 3.0797 1.3445 -0.1082 26 1 2.9849 4.9185 0.7764 27 1 1.1405 0.5895 -2.5563 28 1 3.3494 -2.7362 -4.0599 29 1 3.7824 -3.4965 -1.7601 30 1 3.8338 -3.0227 0.5508 31 1 3.1893 -1.4882 1.1818 32 1 1.9490 -3.3789 2.0034 33 1 0.9742 -2.4726 1.0067 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723171787.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:28 Heat of formation + Delta-G solvation = 1.935309 kcal Electronic energy + Delta-G solvation = -16663.344210 eV Core-core repulsion = 13941.712230 eV Total energy + Delta-G solvation = -2721.631980 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.05946 -38.01516 -37.20068 -35.43706 -34.70083 -31.42348 -30.90992 -29.22728 -26.83452 -25.59019 -24.52685 -22.44004 -21.50714 -18.69092 -17.94748 -17.12184 -16.89224 -16.73179 -15.97870 -15.57205 -15.31174 -15.08925 -14.85627 -14.30207 -14.19190 -14.05109 -13.37905 -13.29067 -12.90705 -12.84699 -12.52128 -12.33268 -12.29968 -12.22683 -12.01490 -11.85357 -11.36502 -10.67200 -9.84467 -9.69442 -9.37785 -9.27006 -8.24104 -6.35149 0.15352 0.27007 1.11590 1.40086 1.40744 1.53921 2.37169 2.58685 3.08375 3.15444 3.82290 3.86031 4.04952 4.14496 4.26382 4.43403 4.56088 4.66086 4.71789 4.79690 4.96598 4.99432 5.08487 5.17749 5.21944 5.27675 5.52423 5.66092 5.80300 6.01810 6.08807 6.25465 6.63789 6.73010 6.79863 7.34866 8.87281 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.006655 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.286357 B = 4206.141350 C = 5117.680951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.502 5.502 3 C 0.219 3.781 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.260 1.260 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.099 3.901 13 C -0.159 4.159 14 C -0.033 4.033 15 Cl -0.076 7.076 16 C -0.116 4.116 17 C -0.081 4.081 18 C -0.071 4.071 19 C 0.115 3.885 20 N -0.839 5.839 21 H 0.012 0.988 22 H 0.079 0.921 23 H 0.071 0.929 24 H -0.034 1.034 25 H -0.004 1.004 26 H 0.264 0.736 27 H 0.106 0.894 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.094 0.906 31 H 0.026 0.974 32 H 0.349 0.651 33 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 -13.811 -4.449 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.223 5.223 3 C 0.094 3.906 4 C -0.560 4.560 5 H 0.088 0.912 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.796 3.204 9 H -0.183 1.183 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.004 3.996 13 C -0.180 4.180 14 C -0.060 4.060 15 Cl -0.047 7.047 16 C -0.134 4.134 17 C -0.100 4.100 18 C -0.073 4.073 19 C -0.015 4.015 20 N -0.369 5.369 21 H 0.031 0.969 22 H 0.098 0.902 23 H 0.090 0.910 24 H -0.016 1.016 25 H 0.014 0.986 26 H 0.073 0.927 27 H 0.125 0.875 28 H 0.179 0.821 29 H 0.185 0.815 30 H 0.112 0.888 31 H 0.044 0.956 32 H 0.162 0.838 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.313 -14.334 -4.751 15.104 hybrid contribution -0.499 2.510 0.281 2.575 sum -0.812 -11.823 -4.470 12.666 Atomic orbital electron populations 1.22289 0.85889 1.01399 1.00710 1.59844 1.08568 1.15520 1.38346 1.19372 0.93216 0.82518 0.95487 1.21443 1.34935 0.97481 1.02168 0.91243 1.25932 0.94929 0.98082 1.00685 1.70107 1.39254 1.11868 1.36181 0.85303 0.78010 0.78225 0.78881 1.18350 1.20565 1.20619 1.19100 0.97418 0.94667 0.88410 1.21601 1.02725 1.00554 0.93124 1.20913 1.02394 0.97733 0.84968 1.98342 1.94976 1.90334 1.21032 1.21302 0.98461 0.94816 0.98857 1.21260 0.98784 0.99756 0.90184 1.20083 0.96723 0.93221 0.97241 1.20449 0.94190 0.96413 0.90445 1.58945 1.05274 1.44068 1.28576 0.96946 0.90246 0.91017 1.01640 0.98571 0.92688 0.87538 0.82136 0.81520 0.88793 0.95589 0.83821 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 8.94 127.69 1.14 2.77 16 2 N -0.50 -20.98 3.71 -724.44 -2.69 -23.67 16 3 C 0.22 11.55 4.31 85.56 0.37 11.92 16 4 C -0.52 -28.77 8.52 25.60 0.22 -28.55 16 5 H 0.07 3.69 7.09 -2.91 -0.02 3.67 16 6 C 0.00 0.11 5.46 84.66 0.46 0.57 16 7 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 8 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 9 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.10 3.72 4.65 38.21 0.18 3.90 16 13 C -0.16 -5.89 8.48 22.42 0.19 -5.70 16 14 C -0.03 -1.01 6.32 22.30 0.14 -0.87 16 15 Cl -0.08 -2.13 28.95 -2.72 -0.08 -2.21 16 16 C -0.12 -2.93 9.83 22.31 0.22 -2.71 16 17 C -0.08 -2.02 9.66 22.24 0.21 -1.81 16 18 C -0.07 -2.22 5.41 -19.73 -0.11 -2.33 16 19 C 0.12 3.28 6.54 85.56 0.56 3.84 16 20 N -0.84 -21.36 9.61 -190.00 -1.83 -23.18 16 21 H 0.01 0.46 7.46 -2.38 -0.02 0.45 16 22 H 0.08 2.46 7.45 -2.39 -0.02 2.44 16 23 H 0.07 2.77 6.85 -2.39 -0.02 2.75 16 24 H -0.03 -1.98 7.49 -2.39 -0.02 -1.99 16 25 H 0.00 -0.23 8.06 -2.39 -0.02 -0.25 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.11 4.34 7.16 -2.91 -0.02 4.32 16 28 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 29 H 0.17 2.94 8.04 -2.91 -0.02 2.92 16 30 H 0.09 2.15 8.00 -2.39 -0.02 2.14 16 31 H 0.03 0.90 7.79 -2.38 -0.02 0.88 16 32 H 0.35 7.38 9.08 -89.69 -0.81 6.56 16 33 H 0.34 9.49 8.01 -89.69 -0.72 8.77 16 Total: -1.00 -62.91 293.39 0.90 -62.00 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -0.40 Total: 16.25 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 3.59 Total: -18.96 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -4.23 Total: -102.57 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.21 kcal Total: -62.91 0.90 -62.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723171787.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.936 kcal (2) G-P(sol) polarization free energy of solvation -62.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds