Wall clock time and date at job start Mon Mar 30 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00248 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99357 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46811 * 90.00524 * 8 6 4 10 10 H 1.48502 * 109.46643 * 209.99901 * 8 6 4 11 11 H 1.48499 * 109.47300 * 329.99977 * 8 6 4 12 12 C 1.39743 * 111.00305 * 123.95616 * 2 1 3 13 13 C 1.38887 * 120.07587 * 295.77365 * 12 2 1 14 14 C 1.38118 * 119.93354 * 179.69824 * 13 12 2 15 15 C 1.38290 * 120.09803 * 0.57647 * 14 13 12 16 16 C 1.50694 * 119.92483 * 179.74437 * 15 14 13 17 17 N 1.46908 * 109.47268 * 269.97917 * 16 15 14 18 18 C 1.38276 * 120.15381 * 359.71931 * 15 14 13 19 19 C 1.38204 * 120.05996 * 359.97438 * 18 15 14 20 20 Cl 1.73605 * 120.04401 * 179.97438 * 19 18 15 21 21 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 22 22 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 23 23 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 25 25 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 26 26 H 0.96999 * 119.99895 * 180.02562 * 7 6 4 27 27 H 1.08001 * 120.02996 * 359.97345 * 13 12 2 28 28 H 1.08007 * 119.94891 * 180.27084 * 14 13 12 29 29 H 1.09004 * 109.47350 * 29.97058 * 16 15 14 30 30 H 1.09001 * 109.47527 * 149.97534 * 16 15 14 31 31 H 1.00900 * 111.00210 * 180.02562 * 17 16 15 32 32 H 1.00902 * 110.99376 * 303.94966 * 17 16 15 33 33 H 1.08004 * 119.96570 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 1.7142 3.9391 -2.6618 8 14 3.0007 4.2759 -0.2313 9 1 4.4531 4.0625 -0.4557 10 1 2.6934 5.7258 -0.3237 11 1 2.6293 3.7760 1.1168 12 6 1.9699 -0.7287 1.0821 13 6 1.7315 -0.2985 2.3810 14 6 2.2226 -1.0244 3.4485 15 6 2.9613 -2.1720 3.2256 16 6 3.5001 -2.9578 4.3930 17 7 4.8373 -2.4601 4.7430 18 6 3.2062 -2.6005 1.9339 19 6 2.7124 -1.8826 0.8611 20 17 3.0207 -2.4205 -0.7605 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3445 0.1082 26 1 1.9894 4.8549 -2.8240 27 1 1.1588 0.6003 2.5561 28 1 2.0336 -0.6925 4.4588 29 1 2.8340 -2.8414 5.2479 30 1 3.5640 -4.0120 4.1231 31 1 5.2207 -2.9717 5.5236 32 1 5.4566 -2.4975 3.9473 33 1 3.7838 -3.4970 1.7632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723172192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:23 Heat of formation + Delta-G solvation = 27.353250 kcal Electronic energy + Delta-G solvation = -16434.940058 eV Core-core repulsion = 13714.410282 eV Total energy + Delta-G solvation = -2720.529776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70970 -36.81834 -36.00735 -34.19248 -32.45669 -30.58147 -29.67836 -27.85877 -25.74349 -23.75278 -22.68477 -21.50151 -20.02368 -17.19938 -16.66339 -15.82537 -15.72602 -15.09422 -14.70097 -14.58406 -13.90707 -13.75991 -13.46452 -13.25415 -12.69115 -12.44378 -12.30494 -11.73224 -11.45821 -11.31442 -11.14445 -11.02570 -10.62635 -10.54103 -10.29234 -9.94673 -9.34488 -8.98227 -8.64227 -8.58411 -8.21697 -7.62314 -6.06521 -4.04333 1.34489 1.40239 2.60749 3.28647 3.35695 3.37892 3.71127 4.40765 4.50390 4.55276 4.75043 4.89247 5.20551 5.25392 5.26932 5.40152 5.57751 5.73730 5.93814 6.04555 6.10597 6.22300 6.49283 6.58463 6.64191 6.80344 6.81029 6.86653 6.97424 7.19245 7.56686 7.75538 8.05325 8.62745 9.01828 9.54317 11.06309 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.006627 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.478501 B = 4223.830269 C = 4771.024817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.497 5.497 3 C 0.170 3.830 4 C -0.509 4.509 5 H 0.083 0.917 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.871 3.129 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.121 3.879 13 C -0.143 4.143 14 C -0.088 4.088 15 C -0.095 4.095 16 C 0.108 3.892 17 N -0.847 5.847 18 C -0.106 4.106 19 C -0.018 4.018 20 Cl -0.054 7.054 21 H 0.087 0.913 22 H 0.019 0.981 23 H 0.050 0.950 24 H -0.006 1.006 25 H 0.025 0.975 26 H 0.264 0.736 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.341 0.659 32 H 0.344 0.656 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 -14.029 13.456 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.218 5.218 3 C 0.045 3.955 4 C -0.547 4.547 5 H 0.101 0.899 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.192 1.192 12 C 0.025 3.975 13 C -0.163 4.163 14 C -0.107 4.107 15 C -0.096 4.096 16 C -0.023 4.023 17 N -0.377 5.377 18 C -0.126 4.126 19 C -0.046 4.046 20 Cl -0.025 7.025 21 H 0.105 0.895 22 H 0.037 0.963 23 H 0.069 0.931 24 H 0.012 0.988 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.349 -13.421 12.904 18.766 hybrid contribution 0.679 0.098 0.914 1.143 sum 3.028 -13.324 13.818 19.433 Atomic orbital electron populations 1.22266 0.86116 1.00074 1.01769 1.59705 1.08121 1.16990 1.37005 1.20254 0.95061 0.82416 0.97747 1.20964 1.35849 0.97175 1.00718 0.89861 1.24848 0.95677 0.97281 0.95241 1.69881 1.46701 1.13318 1.23768 0.86924 0.81115 0.79375 0.82774 1.20048 1.21094 1.19244 1.18995 0.95348 0.92941 0.90217 1.21802 1.01317 1.00549 0.92652 1.20908 0.96958 0.94058 0.98813 1.19552 0.99872 0.96889 0.93252 1.20623 0.91139 0.94841 0.95652 1.58708 1.04216 1.62754 1.11988 1.20776 1.00860 1.00116 0.90854 1.20910 1.01182 0.96054 0.86488 1.98358 1.94283 1.88979 1.20917 0.89465 0.96285 0.93133 0.98845 0.95682 0.92599 0.85389 0.85911 0.90203 0.94706 0.84655 0.84340 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 9.09 60.07 0.55 1.40 16 2 N -0.50 -10.61 4.12 -180.28 -0.74 -11.35 16 3 C 0.17 4.16 3.37 -4.97 -0.02 4.14 16 4 C -0.51 -14.41 9.07 -34.44 -0.31 -14.73 16 5 H 0.08 2.56 7.35 -52.48 -0.39 2.17 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 8 Si 0.87 21.62 27.47 -169.99 -4.67 16.96 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 12 C 0.12 2.24 4.67 -83.73 -0.39 1.85 16 13 C -0.14 -2.36 8.71 -39.39 -0.34 -2.70 16 14 C -0.09 -1.21 9.69 -39.61 -0.38 -1.60 16 15 C -0.09 -1.20 5.39 -104.59 -0.56 -1.76 16 16 C 0.11 1.02 6.91 -4.97 -0.03 0.99 16 17 N -0.85 -7.73 9.61 -11.40 -0.11 -7.84 16 18 C -0.11 -1.45 9.47 -39.58 -0.38 -1.83 16 19 C -0.02 -0.31 6.34 -39.32 -0.25 -0.56 16 20 Cl -0.05 -0.94 28.44 -51.86 -1.47 -2.41 16 21 H 0.09 1.81 6.86 -51.93 -0.36 1.46 16 22 H 0.02 0.34 7.49 -51.93 -0.39 -0.05 16 23 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 24 H -0.01 -0.15 6.52 -51.93 -0.34 -0.49 16 25 H 0.03 0.64 7.48 -51.93 -0.39 0.25 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 27 H 0.13 2.11 7.17 -52.49 -0.38 1.73 16 28 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.34 2.27 9.08 -39.29 -0.36 1.91 16 32 H 0.34 3.08 8.99 -39.29 -0.35 2.73 16 33 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -30.94 292.18 -8.26 -39.20 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.22 Total: 0.55 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -2.22 Total: -12.83 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.08 Total: -45.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.47 Total: -2.41 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.94 -8.26 -39.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723172192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.554 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds