Wall clock time and date at job start Mon Mar 30 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00248 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99357 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46811 * 90.00524 * 8 6 4 10 10 H 1.48502 * 109.46643 * 209.99901 * 8 6 4 11 11 H 1.48499 * 109.47300 * 329.99977 * 8 6 4 12 12 C 1.39743 * 111.00305 * 123.95616 * 2 1 3 13 13 C 1.38887 * 120.07587 * 295.77365 * 12 2 1 14 14 C 1.38118 * 119.93354 * 179.69824 * 13 12 2 15 15 C 1.38290 * 120.09803 * 0.57647 * 14 13 12 16 16 C 1.50694 * 119.92483 * 179.74437 * 15 14 13 17 17 N 1.46908 * 109.47268 * 269.97917 * 16 15 14 18 18 C 1.38276 * 120.15381 * 359.71931 * 15 14 13 19 19 C 1.38204 * 120.05996 * 359.97438 * 18 15 14 20 20 Cl 1.73605 * 120.04401 * 179.97438 * 19 18 15 21 21 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 22 22 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 23 23 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 25 25 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 26 26 H 0.96999 * 119.99895 * 180.02562 * 7 6 4 27 27 H 1.08001 * 120.02996 * 359.97345 * 13 12 2 28 28 H 1.08007 * 119.94891 * 180.27084 * 14 13 12 29 29 H 1.09004 * 109.47350 * 29.97058 * 16 15 14 30 30 H 1.09001 * 109.47527 * 149.97534 * 16 15 14 31 31 H 1.00900 * 111.00210 * 180.02562 * 17 16 15 32 32 H 1.00902 * 110.99376 * 303.94966 * 17 16 15 33 33 H 1.08004 * 119.96570 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 1.7142 3.9391 -2.6618 8 14 3.0007 4.2759 -0.2313 9 1 4.4531 4.0625 -0.4557 10 1 2.6934 5.7258 -0.3237 11 1 2.6293 3.7760 1.1168 12 6 1.9699 -0.7287 1.0821 13 6 1.7315 -0.2985 2.3810 14 6 2.2226 -1.0244 3.4485 15 6 2.9613 -2.1720 3.2256 16 6 3.5001 -2.9578 4.3930 17 7 4.8373 -2.4601 4.7430 18 6 3.2062 -2.6005 1.9339 19 6 2.7124 -1.8826 0.8611 20 17 3.0207 -2.4205 -0.7605 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3445 0.1082 26 1 1.9894 4.8549 -2.8240 27 1 1.1588 0.6003 2.5561 28 1 2.0336 -0.6925 4.4588 29 1 2.8340 -2.8414 5.2479 30 1 3.5640 -4.0120 4.1231 31 1 5.2207 -2.9717 5.5236 32 1 5.4566 -2.4975 3.9473 33 1 3.7838 -3.4970 1.7632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723172192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:23 Heat of formation + Delta-G solvation = 5.652486 kcal Electronic energy + Delta-G solvation = -16435.881073 eV Core-core repulsion = 13714.410282 eV Total energy + Delta-G solvation = -2721.470791 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.96270 -38.17632 -37.29697 -35.27906 -34.47453 -31.74109 -31.01696 -29.67046 -27.09479 -25.15744 -23.86578 -23.01277 -21.41471 -19.14866 -17.85748 -17.06160 -16.99862 -16.57565 -16.07544 -15.63725 -15.45252 -15.01400 -14.72471 -14.65093 -14.48290 -13.91509 -13.41767 -13.34129 -12.99456 -12.74319 -12.45033 -12.38282 -12.33869 -12.18278 -11.93734 -11.63367 -11.46874 -10.80426 -9.88032 -9.60772 -9.41677 -9.25258 -8.29837 -6.33290 0.15600 0.24293 1.32901 1.33572 1.34738 1.43817 2.31954 2.56340 3.01394 3.06477 3.75625 3.84531 3.95348 4.16696 4.28919 4.32772 4.47243 4.55265 4.64097 4.75903 4.78794 4.90444 4.92167 5.07306 5.11345 5.36018 5.49159 5.52739 5.74901 5.94412 6.22149 6.27303 6.62991 6.70060 6.72854 7.29619 8.86488 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.006627 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.478501 B = 4223.830269 C = 4771.024817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.510 5.510 3 C 0.185 3.815 4 C -0.514 4.514 5 H 0.042 0.958 6 C 0.014 3.986 7 N -0.944 5.944 8 Si 0.940 3.060 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.251 1.251 12 C 0.085 3.915 13 C -0.151 4.151 14 C -0.083 4.083 15 C -0.081 4.081 16 C 0.110 3.890 17 N -0.857 5.857 18 C -0.099 4.099 19 C -0.033 4.033 20 Cl -0.069 7.069 21 H 0.059 0.941 22 H 0.030 0.970 23 H 0.071 0.929 24 H -0.003 1.003 25 H 0.017 0.983 26 H 0.268 0.732 27 H 0.123 0.877 28 H 0.148 0.852 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.356 0.644 32 H 0.345 0.655 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 -15.192 16.764 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.231 5.231 3 C 0.060 3.940 4 C -0.552 4.552 5 H 0.061 0.939 6 C -0.184 4.184 7 N -0.584 5.584 8 Si 0.763 3.237 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.175 1.175 12 C -0.010 4.010 13 C -0.171 4.171 14 C -0.103 4.103 15 C -0.081 4.081 16 C -0.020 4.020 17 N -0.389 5.389 18 C -0.118 4.118 19 C -0.060 4.060 20 Cl -0.040 7.040 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.089 0.911 24 H 0.015 0.985 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.166 0.834 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.171 0.829 32 H 0.157 0.843 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.535 -14.617 16.235 22.130 hybrid contribution 0.286 0.329 -0.085 0.444 sum 3.821 -14.288 16.150 21.900 Atomic orbital electron populations 1.22190 0.85505 1.01124 1.00837 1.59475 1.08946 1.15235 1.39472 1.19911 0.94460 0.84315 0.95362 1.21165 1.35064 0.97432 1.01580 0.93948 1.25736 0.96817 0.98305 0.97512 1.70029 1.48369 1.13955 1.26093 0.85830 0.79447 0.78020 0.80400 1.19419 1.20288 1.17484 1.19045 0.97741 0.94059 0.90142 1.21793 1.01883 1.00938 0.92524 1.21204 0.96059 0.93844 0.99157 1.19971 0.98053 0.96158 0.93957 1.20667 0.91489 0.95198 0.94654 1.58679 1.04147 1.63374 1.12675 1.21067 1.00061 1.00354 0.90341 1.21101 1.01861 0.96385 0.86699 1.98349 1.94386 1.89019 1.22224 0.92260 0.95184 0.91054 0.98537 0.96509 0.92334 0.85890 0.83390 0.88839 0.92774 0.82927 0.84271 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.96 9.09 127.69 1.16 3.12 16 2 N -0.51 -22.05 4.12 -724.29 -2.98 -25.04 16 3 C 0.19 9.15 3.37 85.55 0.29 9.44 16 4 C -0.51 -30.15 9.07 25.60 0.23 -29.92 16 5 H 0.04 2.76 7.35 -2.91 -0.02 2.74 16 6 C 0.01 0.83 5.47 84.66 0.46 1.29 16 7 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 8 Si 0.94 44.70 27.47 68.60 1.88 46.58 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 12 C 0.09 3.10 4.67 38.21 0.18 3.28 16 13 C -0.15 -4.72 8.71 22.40 0.19 -4.52 16 14 C -0.08 -2.03 9.69 22.25 0.22 -1.81 16 15 C -0.08 -1.73 5.39 -19.84 -0.11 -1.84 16 16 C 0.11 1.57 6.91 85.55 0.59 2.16 16 17 N -0.86 -12.13 9.61 -189.99 -1.83 -13.95 16 18 C -0.10 -2.41 9.47 22.27 0.21 -2.20 16 19 C -0.03 -1.06 6.34 22.44 0.14 -0.92 16 20 Cl -0.07 -2.35 28.44 -2.72 -0.08 -2.43 16 21 H 0.06 2.60 6.86 -2.39 -0.02 2.59 16 22 H 0.03 1.08 7.49 -2.39 -0.02 1.06 16 23 H 0.07 2.44 8.13 -2.38 -0.02 2.42 16 24 H 0.00 -0.14 6.52 -2.39 -0.02 -0.16 16 25 H 0.02 0.86 7.48 -2.39 -0.02 0.84 16 26 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.12 3.88 7.17 -2.91 -0.02 3.86 16 28 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.09 1.14 8.08 -2.38 -0.02 1.12 16 30 H 0.05 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.36 3.30 9.08 -89.69 -0.81 2.49 16 32 H 0.34 4.88 8.99 -89.69 -0.81 4.08 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -68.34 292.18 0.32 -68.01 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -0.54 Total: 7.84 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 3.57 Total: -21.92 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -4.51 Total: -98.08 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.08 Total: -2.43 kcal Total: -68.34 0.32 -68.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723172192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.663 kcal (2) G-P(sol) polarization free energy of solvation -68.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds