Wall clock time and date at job start Mon Mar 30 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99484 * 3 2 1 5 5 H 1.48501 * 109.47483 * 29.99348 * 3 2 1 6 6 H 1.48494 * 109.47201 * 149.99511 * 3 2 1 7 7 C 1.37870 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47596 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47486 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47131 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.47264 * 180.02562 * 12 11 10 14 14 C 1.36003 * 117.00220 * 180.02562 * 13 12 11 15 15 C 1.38708 * 120.48167 * 359.71500 * 14 13 12 16 16 C 1.39015 * 118.43904 * 179.78154 * 15 14 13 17 17 F 1.35097 * 120.34015 * 180.24110 * 16 15 14 18 18 C 1.38214 * 119.31737 * 0.50307 * 16 15 14 19 19 N 1.32038 * 120.92137 * 359.74055 * 18 16 15 20 20 C 1.32263 * 121.70137 * 0.02562 * 19 18 16 21 21 N 1.39386 * 119.70882 * 179.97438 * 20 19 18 22 22 H 0.96999 * 120.00284 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46948 * 60.00231 * 9 7 2 24 24 H 1.09004 * 109.47237 * 300.00156 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00211 * 10 9 7 26 26 H 1.09004 * 109.47086 * 300.00409 * 10 9 7 27 27 H 1.09001 * 109.46997 * 60.00430 * 11 10 9 28 28 H 1.08992 * 109.47534 * 300.00484 * 11 10 9 29 29 H 1.09001 * 109.47289 * 60.00050 * 12 11 10 30 30 H 1.09004 * 109.47261 * 300.00306 * 12 11 10 31 31 H 1.08004 * 120.78136 * 0.02562 * 15 14 13 32 32 H 1.07999 * 119.53444 * 179.76572 * 18 16 15 33 33 H 0.97003 * 119.99704 * 180.02562 * 21 20 19 34 34 H 0.96993 * 119.99474 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0018 13 8 1.7602 -7.3876 0.0018 14 6 2.5009 -8.5282 0.0029 15 6 3.8867 -8.4672 -0.0020 16 6 4.6018 -9.6593 0.0040 17 9 5.9527 -9.6447 0.0044 18 6 3.9165 -10.8596 0.0040 19 7 2.5964 -10.8872 0.0035 20 6 1.8780 -9.7767 0.0025 21 7 0.4863 -9.8543 0.0015 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8906 26 1 2.8720 -3.6043 -0.8894 27 1 0.8535 -5.0451 -0.8886 28 1 0.8540 -5.0446 0.8913 29 1 3.1013 -6.0917 0.8918 30 1 3.1014 -6.0926 -0.8882 31 1 4.3981 -7.5159 -0.0063 32 1 4.4686 -11.7878 0.0048 33 1 -0.0447 -9.0425 0.0004 34 1 0.0489 -10.7200 0.0019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723401456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:20 Heat of formation + Delta-G solvation = -87.572545 kcal Electronic energy + Delta-G solvation = -17617.263650 eV Core-core repulsion = 14463.413943 eV Total energy + Delta-G solvation = -3153.849707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.83794 -41.67645 -39.32874 -36.54235 -35.52043 -34.43178 -32.64864 -30.83261 -29.48731 -27.07796 -24.96599 -23.89986 -23.08484 -21.82547 -19.44179 -19.11440 -18.48041 -18.36586 -17.47200 -17.18266 -16.64126 -16.51300 -16.40430 -15.70327 -15.65236 -14.94679 -14.67948 -14.62418 -14.26565 -13.74095 -13.39468 -13.37009 -12.86721 -12.76843 -12.39091 -12.13005 -11.97675 -11.63523 -11.40696 -11.35863 -11.17876 -10.89271 -10.55334 -10.40862 -8.51163 -8.20285 -6.31342 0.04580 0.08398 1.40755 1.41684 1.52775 1.96445 2.41407 2.47500 2.61366 3.13257 3.14001 3.45282 3.70255 3.92938 3.96533 4.00219 4.25737 4.32121 4.52893 4.55742 4.67620 4.80031 4.84573 5.10989 5.23013 5.25341 5.42937 5.53295 5.75343 5.86010 5.93431 6.24476 6.35857 6.47482 6.86503 7.13917 7.38250 8.91577 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.036850 B = 0.003299 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.656762 B = 8485.637955 C = 9214.243399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.107 4.107 12 C 0.066 3.934 13 O -0.316 6.316 14 C 0.037 3.963 15 C -0.167 4.167 16 C 0.013 3.987 17 F -0.137 7.137 18 C 0.088 3.912 19 N -0.504 5.504 20 C 0.376 3.624 21 N -0.833 5.833 22 H 0.263 0.737 23 H -0.008 1.008 24 H -0.008 1.008 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.161 0.839 32 H 0.195 0.805 33 H 0.419 0.581 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -21.147 -0.001 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.008 4.008 13 O -0.229 6.229 14 C -0.015 4.015 15 C -0.193 4.193 16 C -0.011 4.011 17 F -0.116 7.116 18 C -0.069 4.069 19 N -0.224 5.224 20 C 0.135 3.865 21 N -0.379 5.379 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.212 0.788 33 H 0.251 0.749 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.461 -21.771 0.003 22.445 hybrid contribution 0.565 1.985 -0.011 2.064 sum 6.025 -19.785 -0.008 20.682 Atomic orbital electron populations 1.70093 1.07819 1.27766 1.51760 1.25989 0.95768 1.03418 0.94800 0.85457 0.78706 0.78472 0.78486 1.19801 1.20874 1.18638 1.21739 0.93669 0.92430 1.50400 0.91985 1.19019 0.94518 0.93027 0.94977 1.21359 0.98125 0.92530 1.01309 1.21462 0.98095 0.92000 1.02925 1.22957 0.95242 0.80171 1.02462 1.86009 1.35462 1.12482 1.88907 1.19268 0.90080 0.86959 1.05206 1.21693 0.92854 1.00197 1.04604 1.18267 0.77811 0.94764 1.10307 1.91485 1.28274 1.97295 1.94537 1.22771 0.88692 0.97767 0.97650 1.67376 1.07614 1.27179 1.20199 1.18076 0.87523 0.86127 0.94802 1.42157 1.00797 1.12859 1.82117 0.92791 0.98936 0.98916 0.92331 0.92301 0.91638 0.91646 0.90804 0.90806 0.82170 0.78819 0.74908 0.75518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.44 0.28 -56.31 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.54 -30.53 9.11 25.60 0.23 -30.29 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.10 -3.63 5.15 30.59 0.16 -3.47 16 11 C -0.11 -3.31 5.58 30.59 0.17 -3.14 16 12 C 0.07 1.63 4.76 71.98 0.34 1.97 16 13 O -0.32 -7.84 9.38 -93.59 -0.88 -8.71 16 14 C 0.04 0.87 6.72 22.69 0.15 1.02 16 15 C -0.17 -3.65 9.12 22.57 0.21 -3.44 16 16 C 0.01 0.27 7.33 22.45 0.16 0.44 16 17 F -0.14 -2.93 17.28 44.97 0.78 -2.15 16 18 C 0.09 1.66 11.16 84.66 0.94 2.60 16 19 N -0.50 -10.87 10.39 -192.54 -2.00 -12.87 16 20 C 0.38 8.30 7.77 133.07 1.03 9.33 16 21 N -0.83 -14.19 9.09 -55.01 -0.50 -14.69 16 22 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 23 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.06 2.13 8.14 -2.38 -0.02 2.12 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 29 H 0.07 1.65 7.71 -2.39 -0.02 1.64 16 30 H 0.07 1.65 7.69 -2.38 -0.02 1.63 16 31 H 0.16 3.11 6.44 -2.91 -0.02 3.09 16 32 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.42 6.69 8.17 -92.71 -0.76 5.94 16 34 H 0.41 5.42 8.95 -92.71 -0.83 4.59 16 Total: -1.00 -65.16 299.34 3.27 -61.89 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -0.46 Total: 10.42 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 4.02 Total: -23.38 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -2.21 Total: -83.87 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.88 Total: -8.71 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.16 3.27 -61.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723401456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.686 kcal (2) G-P(sol) polarization free energy of solvation -65.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds