Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 N 1.40099 * 119.99918 * 89.99656 * 12 2 1 14 14 C 1.29744 * 119.99872 * 179.97438 * 13 12 2 15 15 C 1.47496 * 120.00019 * 180.02562 * 14 13 12 16 16 C 1.39656 * 120.13193 * 359.72509 * 15 14 13 17 17 C 1.38179 * 119.86782 * 179.78866 * 16 15 14 18 18 F 1.35099 * 119.93518 * 180.23460 * 17 16 15 19 19 C 1.38548 * 120.12975 * 0.48490 * 17 16 15 20 20 C 1.38551 * 120.26492 * 359.74527 * 19 17 16 21 21 F 1.35098 * 119.93140 * 179.97438 * 20 19 17 22 22 C 1.38173 * 120.13463 * 0.02562 * 20 19 17 23 23 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 25 25 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 27 27 H 0.97007 * 120.00087 * 270.00667 * 12 2 1 28 28 H 1.08002 * 120.00387 * 0.02562 * 14 13 12 29 29 H 1.08002 * 120.06558 * 0.02562 * 16 15 14 30 30 H 1.08003 * 119.86789 * 179.71971 * 19 17 16 31 31 H 1.07997 * 120.06782 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1962 13 7 2.2518 0.0298 -2.3748 14 6 2.6847 -0.5818 -3.4340 15 6 2.9310 0.1768 -4.6747 16 6 2.6936 1.5525 -4.7141 17 6 2.9304 2.2586 -5.8781 18 9 2.7058 3.5902 -5.9163 19 6 3.3927 1.6027 -7.0075 20 6 3.6255 0.2372 -6.9759 21 9 4.0758 -0.3956 -8.0813 22 6 3.3970 -0.4788 -5.8164 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9035 -0.5277 4.4376 27 1 2.1799 -1.6469 -1.1721 28 1 2.8648 -1.6463 -3.4072 29 1 2.3294 2.0641 -3.8355 30 1 3.5721 2.1579 -7.9163 31 1 3.5783 -1.5431 -5.7931 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755802713.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = -21.026856 kcal Electronic energy + Delta-G solvation = -17337.065153 eV Core-core repulsion = 14062.640779 eV Total energy + Delta-G solvation = -3274.424375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.12111 -49.04447 -38.95190 -36.71489 -34.32296 -32.14821 -30.86870 -30.37562 -27.85995 -25.25900 -23.97717 -22.83366 -20.86198 -20.38691 -18.00928 -17.50309 -16.79809 -16.44942 -16.05757 -16.02326 -15.51907 -15.38574 -15.22012 -14.46883 -14.17427 -13.43497 -13.29431 -12.87840 -12.77014 -12.30163 -12.13566 -12.01357 -11.80469 -11.49331 -11.04393 -10.83925 -10.31710 -9.92504 -9.67557 -9.35887 -9.18991 -8.85228 -8.76359 -7.21979 -6.28158 -4.31630 0.64646 0.91937 2.54913 3.16346 3.26930 3.29466 3.32716 3.58865 3.78716 4.22878 4.30329 4.55921 4.74147 4.89780 5.04644 5.05810 5.49305 5.68310 5.72936 5.82889 6.01708 6.13888 6.19593 6.29157 6.45851 6.52967 6.68831 6.81822 7.19591 7.39865 7.78258 8.28811 8.70965 8.92128 9.30953 10.84149 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.034896 B = 0.004078 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.186090 B = 6865.254760 C = 7422.103672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.268 3.732 3 H 0.044 0.956 4 C -0.537 4.537 5 H 0.079 0.921 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.889 3.111 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.606 5.606 13 N -0.184 5.184 14 C -0.018 4.018 15 C 0.055 3.945 16 C -0.149 4.149 17 C 0.132 3.868 18 F -0.133 7.133 19 C -0.205 4.205 20 C 0.131 3.869 21 F -0.135 7.135 22 C -0.160 4.160 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.269 0.731 27 H 0.379 0.621 28 H 0.114 0.886 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 2.704 -18.541 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.165 3.835 3 H 0.062 0.938 4 C -0.576 4.576 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.342 5.342 13 N 0.002 4.998 14 C -0.224 4.224 15 C 0.052 3.948 16 C -0.170 4.170 17 C 0.113 3.887 18 F -0.112 7.112 19 C -0.226 4.226 20 C 0.111 3.889 21 F -0.113 7.113 22 C -0.181 4.181 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.216 0.784 28 H 0.131 0.869 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.535 3.676 -17.764 18.148 hybrid contribution -0.285 -0.388 -0.110 0.494 sum 0.250 3.289 -17.874 18.176 Atomic orbital electron populations 1.22591 0.99643 1.01061 0.99113 1.18961 0.89425 0.94307 0.80849 0.93798 1.21020 1.33456 1.14711 0.88393 0.90273 1.24821 0.95498 0.96782 0.95375 1.69859 1.44675 1.40088 0.98102 0.86838 0.80516 0.83359 0.77473 1.20234 1.22035 1.18828 1.48726 1.71153 1.08198 1.06137 1.73854 1.03539 1.28341 0.94069 1.23310 1.10303 0.97284 0.91538 1.17938 0.94055 0.91449 0.91316 1.21442 1.03236 0.94315 0.98011 1.17171 0.99723 0.77689 0.94159 1.91527 1.92203 1.30449 1.96998 1.20958 1.07824 0.93919 0.99872 1.17024 0.98790 0.89794 0.83252 1.91518 1.86580 1.82064 1.51154 1.21135 1.04451 1.01288 0.91244 0.93350 0.94654 0.92783 0.92140 0.78357 0.86868 0.83114 0.83837 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 9.00 37.16 0.33 -3.15 16 2 C 0.27 6.11 2.82 -69.08 -0.20 5.92 16 3 H 0.04 1.06 7.20 -51.93 -0.37 0.68 16 4 C -0.54 -14.23 9.32 -34.44 -0.32 -14.55 16 5 H 0.08 2.25 8.03 -52.49 -0.42 1.83 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 8 Si 0.89 20.84 24.37 -169.99 -4.14 16.70 16 9 H -0.28 -6.27 6.87 56.52 0.39 -5.88 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.26 -5.96 6.53 56.52 0.37 -5.59 16 12 N -0.61 -11.96 6.10 -5.88 -0.04 -12.00 16 13 N -0.18 -3.27 10.61 32.16 0.34 -2.93 16 14 C -0.02 -0.25 10.75 -14.66 -0.16 -0.41 16 15 C 0.06 0.70 5.87 -105.06 -0.62 0.08 16 16 C -0.15 -1.94 9.55 -39.07 -0.37 -2.31 16 17 C 0.13 1.59 7.29 -39.49 -0.29 1.30 16 18 F -0.13 -1.67 17.26 2.25 0.04 -1.63 16 19 C -0.20 -2.18 10.00 -39.35 -0.39 -2.57 16 20 C 0.13 1.41 7.29 -39.49 -0.29 1.12 16 21 F -0.13 -1.46 17.26 2.25 0.04 -1.42 16 22 C -0.16 -1.71 9.77 -39.07 -0.38 -2.09 16 23 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.38 6.97 8.58 -182.59 -1.57 5.40 16 28 H 0.11 1.39 8.02 -52.49 -0.42 0.97 16 29 H 0.15 2.10 7.55 -52.49 -0.40 1.70 16 30 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 280.54 15.07 4.23 4.23 Total: -1.00 -27.98 280.54 -5.76 -33.74 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.22 Total: 3.05 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.78 Total: -14.59 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 1.08 Total: -40.08 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.14 Total: 16.70 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.98 -5.76 -33.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755802713.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.711 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds