Wall clock time and date at job start Mon Mar 30 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 N 1.40099 * 119.99918 * 89.99656 * 12 2 1 14 14 C 1.29744 * 119.99872 * 179.97438 * 13 12 2 15 15 C 1.47496 * 120.00019 * 180.02562 * 14 13 12 16 16 C 1.39656 * 120.13193 * 359.72509 * 15 14 13 17 17 C 1.38179 * 119.86782 * 179.78866 * 16 15 14 18 18 F 1.35099 * 119.93518 * 180.23460 * 17 16 15 19 19 C 1.38548 * 120.12975 * 0.48490 * 17 16 15 20 20 C 1.38551 * 120.26492 * 359.74527 * 19 17 16 21 21 F 1.35098 * 119.93140 * 179.97438 * 20 19 17 22 22 C 1.38173 * 120.13463 * 0.02562 * 20 19 17 23 23 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 25 25 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 27 27 H 0.97007 * 120.00087 * 270.00667 * 12 2 1 28 28 H 1.08002 * 120.00387 * 0.02562 * 14 13 12 29 29 H 1.08002 * 120.06558 * 0.02562 * 16 15 14 30 30 H 1.08003 * 119.86789 * 179.71971 * 19 17 16 31 31 H 1.07997 * 120.06782 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1962 13 7 2.2518 0.0298 -2.3748 14 6 2.6847 -0.5818 -3.4340 15 6 2.9310 0.1768 -4.6747 16 6 2.6936 1.5525 -4.7141 17 6 2.9304 2.2586 -5.8781 18 9 2.7058 3.5902 -5.9163 19 6 3.3927 1.6027 -7.0075 20 6 3.6255 0.2372 -6.9759 21 9 4.0758 -0.3956 -8.0813 22 6 3.3970 -0.4788 -5.8164 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9035 -0.5277 4.4376 27 1 2.1799 -1.6469 -1.1721 28 1 2.8648 -1.6463 -3.4072 29 1 2.3294 2.0641 -3.8355 30 1 3.5721 2.1579 -7.9163 31 1 3.5783 -1.5431 -5.7931 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755802713.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:53 Heat of formation + Delta-G solvation = -38.130668 kcal Electronic energy + Delta-G solvation = -17337.806830 eV Core-core repulsion = 14062.640779 eV Total energy + Delta-G solvation = -3275.166052 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.00464 -49.97028 -39.93713 -38.12699 -35.92533 -33.88586 -32.15734 -31.32930 -29.22561 -27.17956 -25.12415 -23.78038 -22.38258 -21.69486 -19.34488 -18.62037 -18.24057 -17.34525 -17.25018 -17.20308 -16.96260 -16.29687 -16.29164 -15.76546 -15.29723 -15.08324 -14.79157 -14.33353 -14.09443 -13.72550 -13.53790 -13.27135 -12.92045 -12.74648 -12.52059 -12.45726 -12.07221 -11.52528 -11.34871 -11.05042 -10.84651 -10.23889 -9.77031 -8.60410 -8.37236 -6.44596 -0.33190 -0.00387 1.31111 1.37809 1.46530 1.47468 1.98459 2.27565 2.58782 2.84285 2.98926 3.36286 3.58190 3.84980 3.98556 4.10817 4.39156 4.45917 4.54143 4.70617 4.77788 4.79922 4.92057 4.99414 5.08131 5.13193 5.33419 5.49189 5.61873 5.76050 6.04366 6.42602 6.62096 7.21882 7.60214 8.78536 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.034896 B = 0.004078 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.186090 B = 6865.254760 C = 7422.103672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.278 3.722 3 H 0.029 0.971 4 C -0.537 4.537 5 H 0.044 0.956 6 C 0.025 3.975 7 N -0.939 5.939 8 Si 0.948 3.052 9 H -0.260 1.260 10 H -0.295 1.295 11 H -0.250 1.250 12 N -0.629 5.629 13 N -0.228 5.228 14 C 0.024 3.976 15 C 0.033 3.967 16 C -0.152 4.152 17 C 0.121 3.879 18 F -0.138 7.138 19 C -0.186 4.186 20 C 0.128 3.872 21 F -0.131 7.131 22 C -0.137 4.137 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.270 0.730 27 H 0.380 0.620 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.166 0.834 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 3.214 -21.295 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.173 3.827 3 H 0.047 0.953 4 C -0.576 4.576 5 H 0.062 0.938 6 C -0.174 4.174 7 N -0.578 5.578 8 Si 0.774 3.226 9 H -0.186 1.186 10 H -0.222 1.222 11 H -0.175 1.175 12 N -0.365 5.365 13 N -0.038 5.038 14 C -0.186 4.186 15 C 0.030 3.970 16 C -0.174 4.174 17 C 0.102 3.898 18 F -0.117 7.117 19 C -0.207 4.207 20 C 0.109 3.891 21 F -0.110 7.110 22 C -0.159 4.159 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.218 0.782 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.184 0.816 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.195 4.190 -20.549 20.973 hybrid contribution -0.013 -0.603 0.412 0.731 sum 0.182 3.587 -20.137 20.455 Atomic orbital electron populations 1.22468 0.98174 1.01387 0.99643 1.18547 0.90442 0.92985 0.80765 0.95295 1.21296 1.32366 1.13604 0.90367 0.93751 1.25654 0.96941 0.99837 0.95005 1.69996 1.46806 1.42232 0.98759 0.85876 0.79351 0.79789 0.77575 1.18617 1.22220 1.17450 1.48234 1.73879 1.07954 1.06435 1.73889 1.07094 1.28563 0.94279 1.23872 1.05256 0.98582 0.90845 1.17887 0.96393 0.91302 0.91416 1.21437 1.03156 0.94764 0.98033 1.17185 1.00661 0.77584 0.94374 1.91517 1.92361 1.30778 1.97019 1.21195 1.05408 0.94057 1.00003 1.17020 0.98899 0.89817 0.83368 1.91540 1.86514 1.81974 1.50938 1.21342 1.01902 1.02482 0.90148 0.93928 0.92769 0.92611 0.92036 0.78208 0.84497 0.84561 0.81608 0.81228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.50 9.00 71.98 0.65 -5.85 16 2 C 0.28 12.73 2.82 44.25 0.12 12.86 16 3 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 4 C -0.54 -29.32 9.32 25.60 0.24 -29.08 16 5 H 0.04 2.65 8.03 -2.91 -0.02 2.63 16 6 C 0.03 1.40 5.45 84.66 0.46 1.86 16 7 N -0.94 -56.35 13.96 21.45 0.30 -56.05 16 8 Si 0.95 43.07 24.37 68.60 1.67 44.75 16 9 H -0.26 -11.13 6.87 99.48 0.68 -10.45 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.25 -10.77 6.53 99.48 0.65 -10.12 16 12 N -0.63 -24.90 6.10 -172.52 -1.05 -25.95 16 13 N -0.23 -7.92 10.61 -52.16 -0.55 -8.47 16 14 C 0.02 0.63 10.75 87.44 0.94 1.57 16 15 C 0.03 0.74 5.87 -20.15 -0.12 0.63 16 16 C -0.15 -3.74 9.55 22.60 0.22 -3.52 16 17 C 0.12 2.65 7.29 22.33 0.16 2.82 16 18 F -0.14 -3.24 17.26 44.97 0.78 -2.46 16 19 C -0.19 -3.33 10.00 22.42 0.22 -3.10 16 20 C 0.13 2.28 7.29 22.33 0.16 2.44 16 21 F -0.13 -2.33 17.26 44.97 0.78 -1.55 16 22 C -0.14 -2.43 9.77 22.60 0.22 -2.20 16 23 H 0.04 1.77 3.27 -2.39 -0.01 1.77 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.38 14.16 8.58 -213.31 -1.83 12.33 16 28 H 0.14 2.96 8.02 -2.91 -0.02 2.93 16 29 H 0.14 3.75 7.55 -2.91 -0.02 3.73 16 30 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -61.37 280.54 4.46 -56.91 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.74 Total: 14.43 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 3.28 Total: -21.59 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -1.31 Total: -90.48 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 1.55 Total: -4.01 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.67 Total: 44.75 kcal Total: -61.37 4.46 -56.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755802713.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.776 kcal (2) G-P(sol) polarization free energy of solvation -61.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds