Wall clock time and date at job start Mon Mar 30 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47189 * 2 1 4 4 C 1.34512 * 125.78762 * 89.99753 * 3 2 1 5 5 C 1.41385 * 106.83926 * 179.76997 * 4 3 2 6 6 C 1.34515 * 106.83992 * 0.23220 * 5 4 3 7 7 C 1.50704 * 125.79063 * 180.02562 * 6 5 4 8 8 S 1.81402 * 109.46937 * 89.99943 * 7 6 5 9 9 C 1.81403 * 102.99956 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47314 * 54.99241 * 9 8 7 11 11 C 1.53000 * 109.46725 * 294.99850 * 9 8 7 12 12 C 1.52997 * 109.47132 * 174.99837 * 9 8 7 13 13 C 1.50701 * 109.47183 * 294.99728 * 12 9 8 14 14 H 1.08002 * 120.00051 * 359.97438 * 13 12 9 15 15 C 1.37878 * 120.00019 * 180.02562 * 13 12 9 16 16 N 1.31511 * 120.00003 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99770 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47082 * 90.00322 * 17 15 13 19 19 H 1.48505 * 109.46739 * 210.00043 * 17 15 13 20 20 H 1.48497 * 109.47331 * 329.99910 * 17 15 13 21 21 O 1.34305 * 125.78789 * 270.15965 * 3 2 1 22 22 H 1.08999 * 109.47186 * 59.99914 * 1 2 3 23 23 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46811 * 299.99891 * 1 2 3 25 25 H 1.08999 * 109.46874 * 239.99702 * 2 1 3 26 26 H 1.09008 * 109.46962 * 119.99965 * 2 1 3 27 27 H 1.08002 * 126.58498 * 0.04167 * 4 3 2 28 28 H 1.08001 * 126.58081 * 180.18948 * 5 4 3 29 29 H 1.08996 * 109.46985 * 209.99865 * 7 6 5 30 30 H 1.09000 * 109.47266 * 329.99985 * 7 6 5 31 31 H 1.08999 * 109.47317 * 60.00076 * 11 9 8 32 32 H 1.09006 * 109.47012 * 180.02562 * 11 9 8 33 33 H 1.08996 * 109.47437 * 299.99627 * 11 9 8 34 34 H 1.08998 * 109.47472 * 54.99985 * 12 9 8 35 35 H 1.08998 * 109.46896 * 174.99947 * 12 9 8 36 36 H 0.97002 * 120.00488 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7454 3.4214 0.6321 6 6 2.7269 3.3755 -0.7122 7 6 3.1277 4.4951 -1.6379 8 16 4.8981 4.3661 -2.0117 9 6 5.1852 5.7748 -3.1180 10 1 4.8495 6.6916 -2.6335 11 6 4.4047 5.5697 -4.4179 12 6 6.6790 5.8809 -3.4314 13 6 7.4353 6.2049 -2.1688 14 1 6.9037 6.3237 -1.2363 15 6 8.8059 6.3508 -2.2044 16 7 9.4532 6.2066 -3.3401 17 14 9.7433 6.7531 -0.6396 18 1 10.1440 5.4925 0.0354 19 1 10.9560 7.5407 -0.9777 20 1 8.8751 7.5460 0.2675 21 8 2.2913 2.1623 -1.0895 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 2.1860 1.8539 2.1205 28 1 3.0463 4.2594 1.2433 29 1 2.5550 4.4245 -2.5626 30 1 2.9265 5.4529 -1.1581 31 1 3.3405 5.4940 -4.1946 32 1 4.5776 6.4159 -5.0829 33 1 4.7404 4.6528 -4.9025 34 1 7.0341 4.9324 -3.8343 35 1 6.8411 6.6707 -4.1648 36 1 10.4174 6.3096 -3.3653 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757163821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:59 Heat of formation + Delta-G solvation = -13.767092 kcal Electronic energy + Delta-G solvation = -15986.854085 eV Core-core repulsion = 13370.125248 eV Total energy + Delta-G solvation = -2616.728838 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.49403 -34.53382 -34.41915 -33.05892 -32.05559 -30.90990 -27.53841 -26.35573 -23.28878 -23.12899 -21.67691 -20.58180 -19.94225 -16.76375 -16.31798 -16.16585 -15.49900 -14.68674 -14.57852 -14.45273 -14.18620 -13.55139 -13.18239 -13.05746 -12.71048 -12.54198 -12.52289 -11.97793 -11.78226 -11.70536 -11.55378 -11.20029 -10.95942 -10.77315 -10.49854 -10.41491 -9.74933 -9.47423 -9.23470 -9.02190 -8.33687 -8.10193 -6.92722 -5.98726 -3.99469 1.50469 2.34712 2.86808 3.00116 3.32292 3.36576 3.41920 3.45679 4.49360 4.52678 4.77850 4.94760 5.00826 5.12974 5.23401 5.33965 5.38829 5.53967 5.56883 5.64082 5.66648 5.75293 5.89458 5.91392 5.97053 6.08631 6.20353 6.34624 6.60405 6.61723 6.71580 7.26940 7.53236 7.64438 7.98943 8.36996 9.05193 9.63904 11.12803 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.004550 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.295698 B = 6152.683940 C = 6748.653483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.042 4.042 3 C -0.015 4.015 4 C -0.208 4.208 5 C -0.193 4.193 6 C 0.015 3.985 7 C -0.032 4.032 8 S -0.213 6.213 9 C -0.047 4.047 10 H 0.076 0.924 11 C -0.146 4.146 12 C 0.040 3.960 13 C -0.514 4.514 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.273 1.273 21 O -0.169 6.169 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.033 0.967 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.260 -8.292 5.301 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 C -0.066 4.066 4 C -0.227 4.227 5 C -0.215 4.215 6 C -0.036 4.036 7 C -0.179 4.179 8 S 0.017 5.983 9 C -0.176 4.176 10 H 0.094 0.906 11 C -0.205 4.205 12 C 0.002 3.998 13 C -0.552 4.552 14 H 0.082 0.918 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.198 1.198 21 O -0.066 6.066 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.163 0.837 28 H 0.167 0.833 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.375 -9.103 5.256 19.459 hybrid contribution -0.126 1.267 0.589 1.403 sum -16.501 -7.836 5.846 19.180 Atomic orbital electron populations 1.21791 0.94148 1.02114 1.02605 1.20058 0.96151 0.87654 1.04081 1.22373 1.04914 0.95033 0.84263 1.21508 1.07448 0.94544 0.99194 1.21543 1.06674 0.99595 0.93648 1.21486 1.03034 0.85287 0.93831 1.21763 1.00300 0.95629 1.00186 1.87600 1.03536 1.42339 1.64862 1.23460 1.03655 0.95607 0.94840 0.90609 1.22129 0.98257 1.02523 0.97571 1.19013 0.84965 0.98064 0.97768 1.21250 0.91925 1.47408 0.94641 0.91829 1.24990 0.97824 0.95478 0.96088 1.69957 1.08255 1.50322 1.25175 0.86572 0.79323 0.78423 0.83610 1.20609 1.21379 1.19812 1.83946 1.65278 1.22404 1.34987 0.92314 0.91767 0.92238 0.90065 0.88963 0.83668 0.83304 0.89270 0.87874 0.94054 0.92066 0.91863 0.95547 0.94859 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.77 16 2 C -0.04 -0.38 6.47 -27.88 -0.18 -0.56 16 3 C -0.01 -0.19 6.57 -35.62 -0.23 -0.43 16 4 C -0.21 -2.71 10.81 -39.70 -0.43 -3.14 16 5 C -0.19 -2.83 10.81 -39.70 -0.43 -3.26 16 6 C 0.01 0.23 6.58 -35.62 -0.23 0.00 16 7 C -0.03 -0.49 6.17 36.01 0.22 -0.27 16 8 S -0.21 -4.30 20.44 -107.50 -2.20 -6.50 16 9 C -0.05 -0.96 2.77 -26.73 -0.07 -1.04 16 10 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 11 C -0.15 -2.45 9.10 37.16 0.34 -2.11 16 12 C 0.04 1.02 4.45 -27.88 -0.12 0.90 16 13 C -0.51 -14.44 8.53 -34.44 -0.29 -14.74 16 14 H 0.06 1.77 7.60 -52.49 -0.40 1.37 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 17 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 O -0.17 -2.67 10.65 5.70 0.06 -2.61 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 27 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 29 H 0.09 1.27 7.14 -51.93 -0.37 0.90 16 30 H 0.10 1.44 8.14 -51.92 -0.42 1.01 16 31 H 0.04 0.59 6.92 -51.93 -0.36 0.23 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -31.29 318.50 -8.55 -39.84 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.76 Total: -2.42 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -1.17 Total: -23.87 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: 0.06 Total: -2.61 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -4.30 SS G_CDS: -2.20 Total: -6.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.29 -8.55 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757163821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.073 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds