Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47189 * 2 1 4 4 C 1.34512 * 125.78762 * 89.99753 * 3 2 1 5 5 C 1.41385 * 106.83926 * 179.76997 * 4 3 2 6 6 C 1.34515 * 106.83992 * 0.23220 * 5 4 3 7 7 C 1.50704 * 125.79063 * 180.02562 * 6 5 4 8 8 S 1.81402 * 109.46937 * 89.99943 * 7 6 5 9 9 C 1.81403 * 102.99956 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47314 * 54.99241 * 9 8 7 11 11 C 1.53000 * 109.46725 * 294.99850 * 9 8 7 12 12 C 1.52997 * 109.47132 * 174.99837 * 9 8 7 13 13 C 1.50701 * 109.47183 * 294.99728 * 12 9 8 14 14 H 1.08002 * 120.00051 * 359.97438 * 13 12 9 15 15 C 1.37878 * 120.00019 * 180.02562 * 13 12 9 16 16 N 1.31511 * 120.00003 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99770 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47082 * 90.00322 * 17 15 13 19 19 H 1.48505 * 109.46739 * 210.00043 * 17 15 13 20 20 H 1.48497 * 109.47331 * 329.99910 * 17 15 13 21 21 O 1.34305 * 125.78789 * 270.15965 * 3 2 1 22 22 H 1.08999 * 109.47186 * 59.99914 * 1 2 3 23 23 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46811 * 299.99891 * 1 2 3 25 25 H 1.08999 * 109.46874 * 239.99702 * 2 1 3 26 26 H 1.09008 * 109.46962 * 119.99965 * 2 1 3 27 27 H 1.08002 * 126.58498 * 0.04167 * 4 3 2 28 28 H 1.08001 * 126.58081 * 180.18948 * 5 4 3 29 29 H 1.08996 * 109.46985 * 209.99865 * 7 6 5 30 30 H 1.09000 * 109.47266 * 329.99985 * 7 6 5 31 31 H 1.08999 * 109.47317 * 60.00076 * 11 9 8 32 32 H 1.09006 * 109.47012 * 180.02562 * 11 9 8 33 33 H 1.08996 * 109.47437 * 299.99627 * 11 9 8 34 34 H 1.08998 * 109.47472 * 54.99985 * 12 9 8 35 35 H 1.08998 * 109.46896 * 174.99947 * 12 9 8 36 36 H 0.97002 * 120.00488 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7454 3.4214 0.6321 6 6 2.7269 3.3755 -0.7122 7 6 3.1277 4.4951 -1.6379 8 16 4.8981 4.3661 -2.0117 9 6 5.1852 5.7748 -3.1180 10 1 4.8495 6.6916 -2.6335 11 6 4.4047 5.5697 -4.4179 12 6 6.6790 5.8809 -3.4314 13 6 7.4353 6.2049 -2.1688 14 1 6.9037 6.3237 -1.2363 15 6 8.8059 6.3508 -2.2044 16 7 9.4532 6.2066 -3.3401 17 14 9.7433 6.7531 -0.6396 18 1 10.1440 5.4925 0.0354 19 1 10.9560 7.5407 -0.9777 20 1 8.8751 7.5460 0.2675 21 8 2.2913 2.1623 -1.0895 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 2.1860 1.8539 2.1205 28 1 3.0463 4.2594 1.2433 29 1 2.5550 4.4245 -2.5626 30 1 2.9265 5.4529 -1.1581 31 1 3.3405 5.4940 -4.1946 32 1 4.5776 6.4159 -5.0829 33 1 4.7404 4.6528 -4.9025 34 1 7.0341 4.9324 -3.8343 35 1 6.8411 6.6707 -4.1648 36 1 10.4174 6.3096 -3.3653 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757163821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = -29.932298 kcal Electronic energy + Delta-G solvation = -15987.555061 eV Core-core repulsion = 13370.125248 eV Total energy + Delta-G solvation = -2617.429814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.57229 -36.40009 -35.21804 -34.20682 -34.02173 -31.96642 -29.40777 -27.37247 -25.24405 -23.96538 -22.80738 -22.22312 -21.03927 -18.50440 -17.93180 -17.30072 -16.92057 -16.55355 -15.74054 -15.56969 -15.39777 -14.85137 -14.55977 -14.23315 -13.96527 -13.76460 -13.68969 -13.38807 -13.27531 -12.96245 -12.77586 -12.58294 -12.39968 -12.34352 -12.19938 -11.88790 -11.46085 -11.22061 -10.84656 -10.69484 -10.47551 -9.20320 -8.51843 -8.18784 -6.26341 0.24633 1.16612 1.39484 1.41492 1.51743 1.68370 1.90502 1.93745 2.42293 3.16287 3.55354 3.84237 4.04492 4.10108 4.11954 4.22379 4.29768 4.37380 4.40818 4.54699 4.60342 4.83638 4.88826 4.91515 4.99850 5.02245 5.14935 5.15913 5.20690 5.34619 5.39202 5.53831 5.61460 5.79181 6.19809 6.21398 6.85994 7.40913 8.93292 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.004550 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.295698 B = 6152.683940 C = 6748.653483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 C -0.014 4.014 4 C -0.218 4.218 5 C -0.193 4.193 6 C -0.017 4.017 7 C -0.006 4.006 8 S -0.278 6.278 9 C -0.035 4.035 10 H 0.081 0.919 11 C -0.138 4.138 12 C 0.046 3.954 13 C -0.524 4.524 14 H 0.063 0.937 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.959 3.041 18 H -0.278 1.278 19 H -0.281 1.281 20 H -0.262 1.262 21 O -0.189 6.189 22 H 0.046 0.954 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.115 0.885 27 H 0.172 0.828 28 H 0.158 0.842 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.054 0.946 34 H -0.007 1.007 35 H 0.014 0.986 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.960 -8.775 6.949 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.065 4.065 4 C -0.237 4.237 5 C -0.216 4.216 6 C -0.068 4.068 7 C -0.153 4.153 8 S -0.049 6.049 9 C -0.164 4.164 10 H 0.100 0.900 11 C -0.197 4.197 12 C 0.008 3.992 13 C -0.563 4.563 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.784 3.216 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.186 1.186 21 O -0.087 6.087 22 H 0.065 0.935 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.133 0.867 27 H 0.189 0.811 28 H 0.176 0.824 29 H 0.122 0.878 30 H 0.139 0.861 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.012 0.988 35 H 0.032 0.968 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.080 -9.573 6.898 21.589 hybrid contribution 0.308 1.322 0.128 1.363 sum -17.772 -8.252 7.026 20.815 Atomic orbital electron populations 1.21769 0.92843 1.03452 1.02160 1.20304 0.97181 0.85362 1.05257 1.23232 1.03411 0.96214 0.83691 1.21863 1.07401 0.93888 1.00561 1.21871 1.05584 1.00566 0.93534 1.21548 1.05154 0.85784 0.94296 1.21682 0.95706 0.96696 1.01229 1.87704 1.09339 1.42513 1.65321 1.23205 1.00529 0.95915 0.96731 0.90038 1.22051 0.99478 1.02473 0.95653 1.18817 0.88615 0.95478 0.96322 1.21594 0.92470 1.46753 0.95437 0.91865 1.25879 0.98991 0.95490 0.99332 1.70080 1.08577 1.51557 1.27344 0.85530 0.78092 0.78280 0.79693 1.20426 1.20690 1.18596 1.83934 1.65722 1.22694 1.36345 0.93486 0.89559 0.91954 0.89934 0.86723 0.81060 0.82414 0.87751 0.86068 0.90939 0.91144 0.92694 0.98824 0.96758 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 71.98 0.71 -1.12 16 2 C -0.04 -0.70 6.47 29.85 0.19 -0.50 16 3 C -0.01 -0.35 6.57 24.83 0.16 -0.19 16 4 C -0.22 -5.23 10.81 22.19 0.24 -4.99 16 5 C -0.19 -5.37 10.81 22.19 0.24 -5.13 16 6 C -0.02 -0.53 6.58 24.83 0.16 -0.37 16 7 C -0.01 -0.19 6.17 71.24 0.44 0.25 16 8 S -0.28 -11.25 20.44 -56.49 -1.15 -12.41 16 9 C -0.04 -1.45 2.77 30.59 0.08 -1.36 16 10 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 11 C -0.14 -4.50 9.10 71.98 0.66 -3.84 16 12 C 0.05 2.40 4.45 29.85 0.13 2.53 16 13 C -0.52 -29.99 8.53 25.60 0.22 -29.77 16 14 H 0.06 3.54 7.60 -2.91 -0.02 3.52 16 15 C 0.00 0.02 5.46 84.66 0.46 0.49 16 16 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 17 Si 0.96 45.55 29.54 68.60 2.03 47.58 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 O -0.19 -5.78 10.65 -2.52 -0.03 -5.81 16 22 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 26 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 28 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.10 2.75 7.14 -2.39 -0.02 2.73 16 30 H 0.12 3.12 8.14 -2.39 -0.02 3.11 16 31 H 0.07 1.91 6.92 -2.39 -0.02 1.90 16 32 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 34 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -68.65 318.50 5.87 -62.79 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.03 Total: 9.15 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 3.70 Total: -44.00 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.28 Total: -57.29 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.03 Total: -5.81 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: -11.25 SS G_CDS: -1.15 Total: -12.41 kcal Total: -68.65 5.87 -62.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757163821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.854 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds