Wall clock time and date at job start Mon Mar 30 2020 06:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47369 * 2 1 4 4 C 1.34518 * 125.78743 * 89.99910 * 3 2 1 5 5 C 1.41383 * 106.83871 * 179.97438 * 4 3 2 6 6 C 1.34510 * 106.84241 * 0.22681 * 5 4 3 7 7 C 1.50699 * 125.79206 * 179.77163 * 6 5 4 8 8 S 1.81407 * 109.46940 * 90.00211 * 7 6 5 9 9 C 1.81399 * 102.99858 * 175.51879 * 8 7 6 10 10 H 1.09002 * 109.47502 * 53.13685 * 9 8 7 11 11 C 1.50696 * 109.46904 * 173.13859 * 9 8 7 12 12 H 1.08005 * 120.00407 * 2.70028 * 11 9 8 13 13 C 1.37885 * 120.00051 * 182.70376 * 11 9 8 14 14 N 1.31516 * 119.99975 * 195.40898 * 13 11 9 15 15 Si 1.86799 * 119.99990 * 15.40280 * 13 11 9 16 16 H 1.48500 * 109.47116 * 92.13697 * 15 13 11 17 17 H 1.48496 * 109.47327 * 212.14174 * 15 13 11 18 18 H 1.48506 * 109.47019 * 332.14062 * 15 13 11 19 19 C 1.52996 * 109.47310 * 293.13920 * 9 8 7 20 20 C 1.53008 * 109.46893 * 299.24947 * 19 9 8 21 21 O 1.34301 * 125.79261 * 269.98289 * 3 2 1 22 22 H 1.08999 * 109.47125 * 299.99476 * 1 2 3 23 23 H 1.08997 * 109.47431 * 60.00092 * 1 2 3 24 24 H 1.09008 * 109.47065 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46819 * 240.00315 * 2 1 3 26 26 H 1.08995 * 109.47298 * 120.00434 * 2 1 3 27 27 H 1.07998 * 126.58025 * 359.94614 * 4 3 2 28 28 H 1.08002 * 126.57910 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47504 * 210.00092 * 7 6 5 30 30 H 1.09004 * 109.47256 * 330.00436 * 7 6 5 31 31 H 0.96995 * 119.99989 * 179.97438 * 14 13 11 32 32 H 1.08994 * 109.47135 * 59.24434 * 19 9 8 33 33 H 1.08994 * 109.47305 * 179.24968 * 19 9 8 34 34 H 1.09000 * 109.46884 * 184.67435 * 20 19 9 35 35 H 1.09003 * 109.46546 * 304.67349 * 20 19 9 36 36 H 1.08990 * 109.47146 * 64.67192 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1624 1.0912 5 6 2.7410 3.4229 0.6321 6 6 2.7200 3.3779 -0.7121 7 6 3.1107 4.5011 -1.6378 8 16 4.8812 4.3853 -2.0154 9 6 5.1275 5.7121 -3.2276 10 1 4.7431 6.6489 -2.8242 11 6 6.5984 5.8575 -3.5212 12 1 7.3098 5.1875 -3.0612 13 6 7.0362 6.8461 -4.3769 14 7 8.2534 6.7954 -4.8724 15 14 5.9004 8.2574 -4.8326 16 1 6.1118 9.3866 -3.8916 17 1 6.1973 8.7045 -6.2172 18 1 4.4889 7.8028 -4.7512 19 6 4.3814 5.3685 -4.5184 20 6 4.9338 4.0632 -5.0948 21 8 2.2945 2.1612 -1.0894 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.1847 1.8543 2.1204 28 1 3.0376 4.2624 1.2434 29 1 2.5366 4.4271 -2.5614 30 1 2.9035 5.4571 -1.1568 31 1 8.5612 7.4906 -5.4746 32 1 3.3194 5.2501 -4.3036 33 1 4.5184 6.1719 -5.2421 34 1 4.4608 3.8616 -6.0559 35 1 6.0113 4.1540 -5.2319 36 1 4.7227 3.2444 -4.4071 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757165318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:01 Heat of formation + Delta-G solvation = -19.776136 kcal Electronic energy + Delta-G solvation = -16334.754842 eV Core-core repulsion = 13717.765432 eV Total energy + Delta-G solvation = -2616.989409 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.56023 -36.83855 -35.20568 -34.17546 -33.85597 -31.91599 -29.39950 -27.47776 -25.39573 -23.87576 -22.71624 -22.34606 -21.06080 -18.72455 -17.91947 -17.30359 -17.06962 -16.10321 -15.65148 -15.58807 -15.32359 -15.21139 -14.85037 -14.49123 -14.07490 -13.91515 -13.73920 -13.42014 -13.08585 -12.93377 -12.55154 -12.52653 -12.38626 -12.20114 -12.00514 -11.87607 -11.48831 -11.26576 -10.80783 -10.61246 -10.53503 -9.19450 -8.45650 -8.34321 -6.36260 0.29864 1.21808 1.33345 1.37701 1.45345 1.75501 1.93174 2.00431 2.31970 2.99360 3.56624 3.85035 4.06629 4.11691 4.22626 4.29489 4.38105 4.39429 4.44431 4.49007 4.61187 4.84954 4.90744 4.92578 5.02469 5.08165 5.15561 5.16773 5.19381 5.30263 5.35353 5.51871 5.63302 5.69196 6.15050 6.21892 6.62917 7.23377 8.81603 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.042915 B = 0.004667 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.291044 B = 5998.266017 C = 6119.050730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 C -0.015 4.015 4 C -0.217 4.217 5 C -0.192 4.192 6 C -0.016 4.016 7 C -0.007 4.007 8 S -0.288 6.288 9 C 0.074 3.926 10 H 0.046 0.954 11 C -0.508 4.508 12 H 0.031 0.969 13 C 0.033 3.967 14 N -0.934 5.934 15 Si 0.925 3.075 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.220 1.220 19 C -0.121 4.121 20 C -0.132 4.132 21 O -0.190 6.190 22 H 0.062 0.938 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.173 0.827 28 H 0.160 0.840 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.269 0.731 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.011 -9.104 9.016 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.066 4.066 4 C -0.236 4.236 5 C -0.215 4.215 6 C -0.067 4.067 7 C -0.153 4.153 8 S -0.057 6.057 9 C -0.055 4.055 10 H 0.064 0.936 11 C -0.547 4.547 12 H 0.049 0.951 13 C -0.168 4.168 14 N -0.572 5.572 15 Si 0.748 3.252 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.143 1.143 19 C -0.161 4.161 20 C -0.189 4.189 21 O -0.088 6.088 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.134 0.866 27 H 0.191 0.809 28 H 0.178 0.822 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.145 -9.807 8.994 21.703 hybrid contribution -0.270 1.795 -0.737 1.959 sum -17.415 -8.012 8.257 20.873 Atomic orbital electron populations 1.21769 0.92912 1.03435 1.02133 1.20299 0.97125 0.85410 1.05255 1.23243 1.03382 0.96296 0.83722 1.21860 1.07346 0.93833 1.00534 1.21863 1.05711 1.00564 0.93322 1.21528 1.05325 0.85520 0.94280 1.21664 0.95806 0.96761 1.01117 1.87150 1.09792 1.50909 1.57828 1.21036 0.98338 0.93143 0.93002 0.93638 1.20364 0.89964 1.16541 1.27810 0.95070 1.25661 0.96658 1.00169 0.94285 1.70075 1.20592 1.34801 1.31775 0.86238 0.81994 0.79280 0.77687 1.20046 1.20881 1.14325 1.22103 0.97938 0.98753 0.97300 1.21606 1.00672 0.97038 0.99614 1.83942 1.65893 1.22506 1.36430 0.91895 0.93614 0.89561 0.90030 0.86603 0.80914 0.82205 0.88266 0.86058 0.92174 0.91953 0.92271 0.92526 0.94489 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.89 71.98 0.71 -1.17 16 2 C -0.04 -0.70 6.47 29.85 0.19 -0.51 16 3 C -0.02 -0.38 6.58 24.83 0.16 -0.22 16 4 C -0.22 -5.12 10.81 22.19 0.24 -4.88 16 5 C -0.19 -5.29 10.81 22.19 0.24 -5.05 16 6 C -0.02 -0.50 6.58 24.83 0.16 -0.34 16 7 C -0.01 -0.21 6.28 71.24 0.45 0.24 16 8 S -0.29 -12.14 19.70 -56.49 -1.11 -13.25 16 9 C 0.07 3.37 2.06 29.85 0.06 3.44 16 10 H 0.05 2.01 6.94 -2.39 -0.02 2.00 16 11 C -0.51 -28.71 7.66 25.60 0.20 -28.51 16 12 H 0.03 2.03 7.96 -2.91 -0.02 2.01 16 13 C 0.03 1.84 5.35 84.66 0.45 2.30 16 14 N -0.93 -57.11 13.96 21.45 0.30 -56.81 16 15 Si 0.92 41.52 25.84 68.60 1.77 43.29 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.22 -8.71 5.29 99.48 0.53 -8.18 16 19 C -0.12 -4.97 4.97 30.60 0.15 -4.82 16 20 C -0.13 -5.45 9.42 71.98 0.68 -4.77 16 21 O -0.19 -5.95 10.65 -2.47 -0.03 -5.98 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 23 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 29 H 0.10 2.97 7.01 -2.39 -0.02 2.95 16 30 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.06 2.15 6.88 -2.39 -0.02 2.14 16 33 H 0.06 2.46 4.55 -2.39 -0.01 2.45 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.04 1.79 7.03 -2.39 -0.02 1.78 16 36 H 0.06 2.27 7.13 -2.39 -0.02 2.26 16 Total: -1.00 -67.10 305.43 5.50 -61.60 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.87 Total: 15.45 kcal Atomic # 6 Polarization: -47.99 SS G_CDS: 3.70 Total: -44.29 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.30 Total: -56.81 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.03 Total: -5.98 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.77 Total: 43.29 kcal Atomic # 16 Polarization: -12.14 SS G_CDS: -1.11 Total: -13.25 kcal Total: -67.10 5.50 -61.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757165318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.826 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds