Wall clock time and date at job start Mon Mar 30 2020 06:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47311 * 2 1 4 4 C 1.34509 * 125.79080 * 89.99996 * 3 2 1 5 5 C 1.41388 * 106.83726 * 179.77310 * 4 3 2 6 6 C 1.34505 * 106.84385 * 0.22890 * 5 4 3 7 7 C 1.50703 * 125.78964 * 180.02562 * 6 5 4 8 8 S 1.81400 * 109.47415 * 89.99547 * 7 6 5 9 9 C 1.81396 * 103.00077 * 175.13087 * 8 7 6 10 10 H 1.09009 * 109.46798 * 53.16353 * 9 8 7 11 11 C 1.50699 * 109.47448 * 293.16659 * 9 8 7 12 12 H 1.08007 * 119.99729 * 359.97438 * 11 9 8 13 13 C 1.37875 * 120.00139 * 180.02562 * 11 9 8 14 14 N 1.31506 * 120.00124 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99886 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47416 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.46929 * 209.99840 * 15 13 11 18 18 H 1.48504 * 109.46981 * 329.99369 * 15 13 11 19 19 C 1.52996 * 109.47114 * 173.16051 * 9 8 7 20 20 C 1.52996 * 109.47277 * 294.61971 * 19 9 8 21 21 O 1.34305 * 125.78648 * 270.16111 * 3 2 1 22 22 H 1.09001 * 109.47122 * 300.00006 * 1 2 3 23 23 H 1.08994 * 109.47073 * 60.00286 * 1 2 3 24 24 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47347 * 239.99492 * 2 1 3 26 26 H 1.09003 * 109.47145 * 119.99933 * 2 1 3 27 27 H 1.07994 * 126.58185 * 0.03555 * 4 3 2 28 28 H 1.08001 * 126.57218 * 180.18892 * 5 4 3 29 29 H 1.09003 * 109.47034 * 209.99589 * 7 6 5 30 30 H 1.08998 * 109.46833 * 329.99323 * 7 6 5 31 31 H 0.96998 * 120.00485 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.47249 * 54.62552 * 19 9 8 33 33 H 1.09010 * 109.47088 * 174.61710 * 19 9 8 34 34 H 1.09002 * 109.46930 * 295.45114 * 20 19 9 35 35 H 1.08996 * 109.47464 * 55.45333 * 20 19 9 36 36 H 1.09002 * 109.46893 * 175.45540 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1624 1.0911 5 6 2.7454 3.4214 0.6319 6 6 2.7269 3.3754 -0.7123 7 6 3.1276 4.4951 -1.6380 8 16 4.8980 4.3663 -2.0119 9 6 5.1539 5.6826 -3.2334 10 1 4.7746 6.6247 -2.8372 11 6 4.4185 5.3395 -4.5033 12 1 3.8540 4.4210 -4.5690 13 6 4.4673 6.1974 -5.5815 14 7 5.1550 7.3155 -5.5016 15 14 3.5552 5.7723 -7.1553 16 1 2.1782 6.3250 -7.0942 17 1 4.2724 6.3575 -8.3165 18 1 3.4900 4.2965 -7.3064 19 6 6.6485 5.8192 -3.5305 20 6 7.3767 6.2981 -2.2731 21 8 2.2913 2.1622 -1.0895 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.1861 1.8539 2.1203 28 1 3.0463 4.2593 1.2432 29 1 2.5549 4.4245 -2.5628 30 1 2.9263 5.4528 -1.1582 31 1 5.1890 7.9193 -6.2600 32 1 7.0481 4.8522 -3.8358 33 1 6.7949 6.5424 -4.3329 34 1 7.0344 7.3001 -2.0143 35 1 7.1644 5.6174 -1.4487 36 1 8.4504 6.3181 -2.4604 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757165320.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:04 Heat of formation + Delta-G solvation = -14.482746 kcal Electronic energy + Delta-G solvation = -16241.355411 eV Core-core repulsion = 13624.595540 eV Total energy + Delta-G solvation = -2616.759871 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.33685 -34.62516 -34.29054 -32.88439 -31.61122 -30.69430 -27.59578 -26.15935 -23.23176 -22.95946 -21.49770 -20.35153 -19.78665 -16.54351 -16.51179 -15.97467 -15.33267 -14.60923 -14.53136 -14.22327 -13.84080 -13.25883 -13.05893 -12.95188 -12.59956 -12.49215 -12.16913 -11.98614 -11.63927 -11.53754 -11.21120 -11.03757 -10.96589 -10.89188 -10.36470 -10.03369 -9.81322 -9.61125 -9.21011 -8.86155 -8.37238 -7.95492 -6.69600 -6.08342 -4.24268 1.74554 2.58813 3.06484 3.23295 3.27957 3.30826 3.35335 3.83457 4.35126 4.68312 4.91108 5.11632 5.13941 5.16942 5.26257 5.40588 5.61086 5.66038 5.75841 5.97139 6.01132 6.06667 6.18584 6.22301 6.30921 6.39857 6.46881 6.76401 6.89786 6.96839 7.08400 7.44566 7.47161 7.67606 7.83812 8.12489 8.76821 9.40634 10.89556 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.005520 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.227674 B = 5070.792953 C = 6017.014093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C -0.019 4.019 4 C -0.209 4.209 5 C -0.203 4.203 6 C 0.024 3.976 7 C -0.002 4.002 8 S -0.304 6.304 9 C 0.115 3.885 10 H 0.044 0.956 11 C -0.522 4.522 12 H 0.065 0.935 13 C 0.069 3.931 14 N -0.887 5.887 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.104 4.104 20 C -0.151 4.151 21 O -0.167 6.167 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.264 0.736 32 H 0.041 0.959 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 -8.613 10.392 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 C -0.070 4.070 4 C -0.228 4.228 5 C -0.225 4.225 6 C -0.027 4.027 7 C -0.149 4.149 8 S -0.074 6.074 9 C -0.013 4.013 10 H 0.062 0.938 11 C -0.561 4.561 12 H 0.083 0.917 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.723 3.277 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.144 4.144 20 C -0.208 4.208 21 O -0.063 6.063 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.002 -9.233 10.385 14.768 hybrid contribution -1.251 0.832 -1.205 1.926 sum -6.253 -8.400 9.180 13.926 Atomic orbital electron populations 1.21791 0.94208 1.02015 1.02667 1.20033 0.96140 0.87794 1.03895 1.22346 1.05200 0.95087 0.84390 1.21460 1.07728 0.94623 0.98993 1.21482 1.07860 0.99505 0.93647 1.21797 1.01763 0.85248 0.93928 1.21487 0.98424 0.94593 1.00439 1.86363 1.06941 1.55532 1.58582 1.20902 0.96749 0.90827 0.92797 0.93759 1.21358 1.31018 1.06513 0.97239 0.91660 1.24975 0.95178 0.94742 0.98607 1.69849 1.40425 1.10711 1.31502 0.86510 0.79695 0.78902 0.82548 1.20566 1.21004 1.19650 1.21447 0.93671 1.01239 0.98005 1.21900 0.98646 1.00700 0.99590 1.83986 1.65014 1.22492 1.34845 0.92280 0.92222 0.91861 0.90129 0.89137 0.83878 0.83540 0.88176 0.88131 0.92605 0.94008 0.87523 0.93663 0.93067 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.16 0.37 -0.97 16 2 C -0.04 -0.43 6.47 -27.88 -0.18 -0.61 16 3 C -0.02 -0.28 6.57 -35.63 -0.23 -0.51 16 4 C -0.21 -2.93 10.81 -39.70 -0.43 -3.36 16 5 C -0.20 -3.21 10.81 -39.70 -0.43 -3.64 16 6 C 0.02 0.43 6.58 -35.63 -0.23 0.19 16 7 C 0.00 -0.04 6.32 36.01 0.23 0.18 16 8 S -0.30 -6.68 19.80 -107.50 -2.13 -8.81 16 9 C 0.11 2.83 2.19 -27.89 -0.06 2.77 16 10 H 0.04 1.16 8.14 -51.92 -0.42 0.74 16 11 C -0.52 -13.96 8.22 -34.44 -0.28 -14.25 16 12 H 0.07 1.78 7.67 -52.48 -0.40 1.37 16 13 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 14 N -0.89 -24.29 11.29 55.43 0.63 -23.66 16 15 Si 0.90 20.86 29.54 -169.99 -5.02 15.83 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.10 -2.46 5.24 -26.74 -0.14 -2.60 16 20 C -0.15 -3.04 9.81 37.16 0.36 -2.68 16 21 O -0.17 -3.00 10.65 5.70 0.06 -2.94 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.15 2.06 8.06 -52.49 -0.42 1.63 16 29 H 0.10 2.02 7.90 -51.92 -0.41 1.61 16 30 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.11 2.77 5.94 -51.92 -0.31 2.46 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 1.01 7.01 -51.93 -0.36 0.65 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -28.37 315.18 -8.53 -36.91 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.69 Total: 1.64 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -1.13 Total: -23.72 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.63 Total: -23.66 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: 0.06 Total: -2.94 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -2.13 Total: -8.81 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.37 -8.53 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757165320.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.425 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds