Wall clock time and date at job start Mon Mar 30 2020 06:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47311 * 2 1 4 4 C 1.34509 * 125.79080 * 89.99996 * 3 2 1 5 5 C 1.41388 * 106.83726 * 179.77310 * 4 3 2 6 6 C 1.34505 * 106.84385 * 0.22890 * 5 4 3 7 7 C 1.50703 * 125.78964 * 180.02562 * 6 5 4 8 8 S 1.81400 * 109.47415 * 89.99547 * 7 6 5 9 9 C 1.81396 * 103.00077 * 175.13087 * 8 7 6 10 10 H 1.09009 * 109.46798 * 53.16353 * 9 8 7 11 11 C 1.50699 * 109.47448 * 293.16659 * 9 8 7 12 12 H 1.08007 * 119.99729 * 359.97438 * 11 9 8 13 13 C 1.37875 * 120.00139 * 180.02562 * 11 9 8 14 14 N 1.31506 * 120.00124 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99886 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47416 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.46929 * 209.99840 * 15 13 11 18 18 H 1.48504 * 109.46981 * 329.99369 * 15 13 11 19 19 C 1.52996 * 109.47114 * 173.16051 * 9 8 7 20 20 C 1.52996 * 109.47277 * 294.61971 * 19 9 8 21 21 O 1.34305 * 125.78648 * 270.16111 * 3 2 1 22 22 H 1.09001 * 109.47122 * 300.00006 * 1 2 3 23 23 H 1.08994 * 109.47073 * 60.00286 * 1 2 3 24 24 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47347 * 239.99492 * 2 1 3 26 26 H 1.09003 * 109.47145 * 119.99933 * 2 1 3 27 27 H 1.07994 * 126.58185 * 0.03555 * 4 3 2 28 28 H 1.08001 * 126.57218 * 180.18892 * 5 4 3 29 29 H 1.09003 * 109.47034 * 209.99589 * 7 6 5 30 30 H 1.08998 * 109.46833 * 329.99323 * 7 6 5 31 31 H 0.96998 * 120.00485 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.47249 * 54.62552 * 19 9 8 33 33 H 1.09010 * 109.47088 * 174.61710 * 19 9 8 34 34 H 1.09002 * 109.46930 * 295.45114 * 20 19 9 35 35 H 1.08996 * 109.47464 * 55.45333 * 20 19 9 36 36 H 1.09002 * 109.46893 * 175.45540 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1624 1.0911 5 6 2.7454 3.4214 0.6319 6 6 2.7269 3.3754 -0.7123 7 6 3.1276 4.4951 -1.6380 8 16 4.8980 4.3663 -2.0119 9 6 5.1539 5.6826 -3.2334 10 1 4.7746 6.6247 -2.8372 11 6 4.4185 5.3395 -4.5033 12 1 3.8540 4.4210 -4.5690 13 6 4.4673 6.1974 -5.5815 14 7 5.1550 7.3155 -5.5016 15 14 3.5552 5.7723 -7.1553 16 1 2.1782 6.3250 -7.0942 17 1 4.2724 6.3575 -8.3165 18 1 3.4900 4.2965 -7.3064 19 6 6.6485 5.8192 -3.5305 20 6 7.3767 6.2981 -2.2731 21 8 2.2913 2.1622 -1.0895 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.1861 1.8539 2.1203 28 1 3.0463 4.2593 1.2432 29 1 2.5549 4.4245 -2.5628 30 1 2.9263 5.4528 -1.1582 31 1 5.1890 7.9193 -6.2600 32 1 7.0481 4.8522 -3.8358 33 1 6.7949 6.5424 -4.3329 34 1 7.0344 7.3001 -2.0143 35 1 7.1644 5.6174 -1.4487 36 1 8.4504 6.3181 -2.4604 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757165320.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:04 Heat of formation + Delta-G solvation = -27.632293 kcal Electronic energy + Delta-G solvation = -16241.925618 eV Core-core repulsion = 13624.595540 eV Total energy + Delta-G solvation = -2617.330078 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.56358 -36.57852 -35.20620 -34.16671 -33.56157 -31.93229 -29.48438 -27.33828 -25.18151 -23.93240 -22.73785 -22.12247 -21.02501 -18.58204 -17.83533 -17.28893 -17.07941 -16.26761 -15.69041 -15.49536 -15.38395 -14.92231 -14.55952 -14.00087 -13.95522 -13.73556 -13.72045 -13.33496 -13.19454 -12.86605 -12.77539 -12.72721 -12.39244 -12.19893 -11.89891 -11.84027 -11.70079 -11.16988 -10.81335 -10.78654 -10.34515 -9.19698 -8.53318 -8.07572 -6.36105 0.37117 1.28003 1.37677 1.39669 1.49508 1.79595 1.96512 2.03665 2.39288 3.07375 3.58107 3.87319 4.09528 4.12857 4.33336 4.37571 4.43490 4.47546 4.56490 4.61081 4.70910 4.85561 4.92065 4.98742 5.01083 5.15001 5.17901 5.25306 5.28869 5.34390 5.51111 5.65128 5.67071 5.80484 6.13020 6.23579 6.67144 7.31247 8.83710 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.005520 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.227674 B = 5070.792953 C = 6017.014093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C -0.019 4.019 4 C -0.213 4.213 5 C -0.190 4.190 6 C -0.017 4.017 7 C 0.010 3.990 8 S -0.308 6.308 9 C 0.112 3.888 10 H 0.021 0.979 11 C -0.539 4.539 12 H 0.052 0.948 13 C 0.028 3.972 14 N -0.908 5.908 15 Si 0.954 3.046 16 H -0.274 1.274 17 H -0.277 1.277 18 H -0.274 1.274 19 C -0.100 4.100 20 C -0.139 4.139 21 O -0.195 6.195 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.178 0.822 28 H 0.163 0.837 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.267 0.733 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 -9.937 11.809 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C -0.070 4.070 4 C -0.232 4.232 5 C -0.212 4.212 6 C -0.067 4.067 7 C -0.138 4.138 8 S -0.078 6.078 9 C -0.016 4.016 10 H 0.040 0.960 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.174 4.174 14 N -0.546 5.546 15 Si 0.780 3.220 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.198 1.198 19 C -0.139 4.139 20 C -0.197 4.197 21 O -0.093 6.093 22 H 0.083 0.917 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.138 0.862 27 H 0.195 0.805 28 H 0.181 0.819 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.674 -10.549 11.805 16.818 hybrid contribution -1.108 1.154 -1.550 2.227 sum -6.782 -9.395 10.255 15.474 Atomic orbital electron populations 1.21777 0.93062 1.03451 1.02036 1.20303 0.97028 0.85373 1.05297 1.23301 1.03589 0.96349 0.83733 1.21857 1.07207 0.93577 1.00510 1.21838 1.05797 1.00687 0.92866 1.21595 1.05145 0.85564 0.94407 1.21398 0.95723 0.96384 1.00256 1.86183 1.10090 1.54258 1.57258 1.20714 0.97110 0.90844 0.92885 0.96045 1.21515 1.31493 1.06217 0.98568 0.92930 1.25653 0.95833 0.94640 1.01275 1.69950 1.41051 1.11281 1.32311 0.85604 0.78792 0.78409 0.79225 1.19915 1.20254 1.19848 1.21317 0.93578 1.00056 0.98996 1.21772 0.99558 1.00559 0.97791 1.83960 1.65715 1.22877 1.36745 0.91750 0.94022 0.89415 0.90223 0.86200 0.80490 0.81944 0.90060 0.86832 0.92405 0.94986 0.89965 0.93583 0.92593 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.89 71.98 0.71 -1.53 16 2 C -0.04 -0.77 6.47 29.85 0.19 -0.58 16 3 C -0.02 -0.51 6.57 24.83 0.16 -0.35 16 4 C -0.21 -5.38 10.81 22.19 0.24 -5.14 16 5 C -0.19 -5.67 10.81 22.19 0.24 -5.43 16 6 C -0.02 -0.59 6.58 24.83 0.16 -0.43 16 7 C 0.01 0.38 6.32 71.24 0.45 0.83 16 8 S -0.31 -13.74 19.80 -56.49 -1.12 -14.86 16 9 C 0.11 5.69 2.19 29.85 0.07 5.76 16 10 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 11 C -0.54 -29.62 8.22 25.60 0.21 -29.41 16 12 H 0.05 2.96 7.67 -2.91 -0.02 2.93 16 13 C 0.03 1.50 5.29 84.66 0.45 1.95 16 14 N -0.91 -50.53 11.29 21.45 0.24 -50.29 16 15 Si 0.95 43.23 29.54 68.60 2.03 45.25 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 C -0.10 -4.82 5.24 30.59 0.16 -4.66 16 20 C -0.14 -5.55 9.81 71.98 0.71 -4.84 16 21 O -0.19 -6.98 10.65 -2.54 -0.03 -7.01 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 28 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.08 3.44 7.90 -2.39 -0.02 3.42 16 30 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 31 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 32 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 4.38 5.94 -2.38 -0.01 4.36 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 2.16 7.01 -2.39 -0.02 2.15 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -61.71 315.18 5.91 -55.80 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.04 Total: 14.95 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 3.75 Total: -43.84 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.24 Total: -50.29 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.03 Total: -7.01 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -13.74 SS G_CDS: -1.12 Total: -14.86 kcal Total: -61.71 5.91 -55.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757165320.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.163 kcal (2) G-P(sol) polarization free energy of solvation -61.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds