Wall clock time and date at job start Mon Mar 30 2020 06:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48498 * 109.47091 * 270.00021 * 3 2 1 5 5 H 1.48504 * 109.47149 * 29.99338 * 3 2 1 6 6 H 1.48496 * 109.47404 * 149.99927 * 3 2 1 7 7 C 1.40026 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00397 * 180.02562 * 7 2 1 9 9 C 1.41316 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.40589 * 119.78402 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14570 * 180.02562 * 10 9 7 12 12 C 1.38634 * 118.68273 * 0.02562 * 11 10 9 13 13 C 1.39752 * 119.49062 * 359.97438 * 12 11 10 14 14 N 1.38831 * 119.58641 * 179.97438 * 13 12 11 15 15 C 1.46498 * 119.99574 * 0.27981 * 14 13 12 16 16 C 1.50700 * 109.46769 * 179.72447 * 15 14 13 17 17 C 1.38237 * 119.99855 * 269.71968 * 16 15 14 18 18 C 1.38234 * 120.00010 * 179.77103 * 17 16 15 19 19 C 1.38236 * 119.99925 * 0.50518 * 18 17 16 20 20 C 1.38233 * 119.99779 * 359.74919 * 19 18 17 21 21 C 1.38232 * 120.00431 * 0.02562 * 20 19 18 22 22 N 1.31982 * 120.83424 * 0.25859 * 13 12 11 23 23 H 0.96995 * 120.00059 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.43012 * 0.02562 * 10 9 7 25 25 H 1.08002 * 120.65487 * 179.97438 * 11 10 9 26 26 H 1.07998 * 120.25753 * 180.02562 * 12 11 10 27 27 H 0.97001 * 119.99981 * 179.97438 * 14 13 12 28 28 H 1.09004 * 109.46963 * 299.72241 * 15 14 13 29 29 H 1.08994 * 109.47567 * 59.72393 * 15 14 13 30 30 H 1.08000 * 119.99739 * 0.02562 * 17 16 15 31 31 H 1.08001 * 120.00122 * 180.23790 * 18 17 16 32 32 H 1.07999 * 120.00189 * 179.72868 * 19 18 17 33 33 H 1.08003 * 119.99910 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.00459 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.6999 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3036 -4.8418 0.0000 12 6 -0.0819 -4.7945 -0.0011 13 6 -0.7280 -3.5553 -0.0010 14 7 -2.1155 -3.5057 -0.0026 15 6 -2.8928 -4.7474 0.0018 16 6 -4.3636 -4.4192 0.0058 17 6 -5.0358 -4.2724 1.2048 18 6 -6.3839 -3.9667 1.2085 19 6 -7.0622 -3.8181 0.0132 20 6 -6.3911 -3.9701 -1.1858 21 6 -5.0420 -4.2712 -1.1895 22 7 -0.0359 -2.4315 -0.0051 23 1 -0.4850 0.8400 -0.0004 24 1 3.0887 -3.6553 0.0010 25 1 1.8224 -5.7890 -0.0004 26 1 -0.6576 -5.7083 -0.0011 27 1 -2.5701 -2.6488 -0.0022 28 1 -2.6527 -5.3295 -0.8880 29 1 -2.6473 -5.3266 0.8920 30 1 -4.5067 -4.3925 2.1386 31 1 -6.9082 -3.8482 2.1452 32 1 -8.1164 -3.5836 0.0160 33 1 -6.9211 -3.8544 -2.1197 34 1 -4.5178 -4.3904 -2.1262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764387719.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:04 Heat of formation + Delta-G solvation = 44.952772 kcal Electronic energy + Delta-G solvation = -17261.319970 eV Core-core repulsion = 14543.986216 eV Total energy + Delta-G solvation = -2717.333753 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45009 -39.83474 -36.73043 -35.16674 -32.83500 -32.11116 -31.79721 -30.29504 -27.29685 -26.58156 -23.46827 -23.44042 -22.57093 -21.83540 -19.27112 -18.30751 -17.50748 -16.65394 -16.48558 -16.26608 -16.03893 -15.75745 -15.04618 -14.76501 -14.67090 -14.27412 -13.91474 -13.56298 -13.55130 -13.38764 -12.83838 -12.72755 -12.59557 -12.22678 -11.93427 -11.91008 -11.74275 -11.29720 -10.67834 -9.84606 -9.82776 -9.77502 -9.44376 -8.30831 -8.22559 -6.48231 0.33912 0.49069 1.06165 1.34503 1.41424 1.54812 1.58974 2.25274 2.58842 2.92739 3.08914 3.75126 3.93293 4.06921 4.15009 4.28293 4.38259 4.43095 4.55703 4.64671 4.79533 4.79720 4.98910 5.00629 5.06205 5.12198 5.15581 5.36109 5.54514 5.59742 5.69526 5.71362 5.96443 6.05955 6.09786 6.22671 6.54663 6.82957 6.92861 7.21085 8.34362 8.51569 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022939 B = 0.005090 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.345571 B = 5500.052097 C = 6415.908821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.026 3.974 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.472 4.472 8 H 0.087 0.913 9 C 0.259 3.741 10 C -0.343 4.343 11 C -0.029 4.029 12 C -0.368 4.368 13 C 0.393 3.607 14 N -0.729 5.729 15 C 0.183 3.817 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.127 4.127 19 C -0.117 4.117 20 C -0.127 4.127 21 C -0.114 4.114 22 N -0.566 5.566 23 H 0.275 0.725 24 H 0.103 0.897 25 H 0.130 0.870 26 H 0.118 0.882 27 H 0.391 0.609 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.457 -5.350 0.040 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.504 4.504 8 H 0.105 0.895 9 C 0.131 3.869 10 C -0.366 4.366 11 C -0.053 4.053 12 C -0.394 4.394 13 C 0.153 3.847 14 N -0.364 5.364 15 C 0.059 3.941 16 C -0.112 4.112 17 C -0.133 4.133 18 C -0.145 4.145 19 C -0.135 4.135 20 C -0.145 4.145 21 C -0.133 4.133 22 N -0.289 5.289 23 H 0.086 0.914 24 H 0.121 0.879 25 H 0.148 0.852 26 H 0.136 0.864 27 H 0.224 0.776 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.102 -4.671 0.035 13.910 hybrid contribution 0.854 0.097 -0.004 0.860 sum -12.248 -4.574 0.032 13.074 Atomic orbital electron populations 1.70257 1.08837 1.28650 1.29791 1.26974 0.95718 1.04410 0.92488 0.85156 0.79017 0.75789 0.79369 1.18801 1.19339 1.17927 1.19955 0.94642 0.90503 1.45320 0.89469 1.18696 0.87622 0.93262 0.87287 1.21705 0.99030 0.93748 1.22105 1.21012 0.93641 0.97231 0.93439 1.20955 0.95063 0.96000 1.27397 1.18981 0.85774 0.90399 0.89571 1.44339 1.01326 1.07843 1.82880 1.20067 0.86483 0.86168 1.01379 1.19897 0.94473 1.02433 0.94398 1.21274 0.95447 0.99137 0.97431 1.21457 0.93964 0.99514 0.99583 1.21554 1.01230 0.98666 0.92081 1.21456 0.93990 0.99526 0.99543 1.21273 0.95392 0.99139 0.97475 1.68186 1.08045 1.26114 1.26535 0.91404 0.87860 0.85172 0.86378 0.77561 0.91942 0.91959 0.85914 0.83797 0.83287 0.83792 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.88 11.46 21.84 0.25 -41.63 16 2 C 0.03 1.36 5.50 85.29 0.47 1.83 16 3 Si 0.99 39.38 29.56 68.60 2.03 41.41 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.47 -26.81 9.14 23.46 0.21 -26.59 16 8 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 9 C 0.26 15.13 6.55 40.19 0.26 15.40 16 10 C -0.34 -17.92 9.83 22.87 0.22 -17.69 16 11 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 12 C -0.37 -17.05 9.34 22.73 0.21 -16.84 16 13 C 0.39 19.92 7.65 133.40 1.02 20.94 16 14 N -0.73 -30.59 5.71 -348.73 -1.99 -32.59 16 15 C 0.18 5.90 5.01 85.63 0.43 6.33 16 16 C -0.11 -3.10 5.25 -19.86 -0.10 -3.21 16 17 C -0.11 -2.88 9.70 22.27 0.22 -2.67 16 18 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 19 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 20 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 21 C -0.11 -2.88 9.70 22.27 0.22 -2.66 16 22 N -0.57 -32.92 7.89 -186.59 -1.47 -34.39 16 23 H 0.28 13.86 8.29 -92.71 -0.77 13.09 16 24 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 25 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 26 H 0.12 4.69 6.68 -2.91 -0.02 4.68 16 27 H 0.39 17.06 8.58 -92.71 -0.80 16.26 16 28 H 0.06 1.96 7.87 -2.38 -0.02 1.94 16 29 H 0.06 1.96 7.86 -2.39 -0.02 1.94 16 30 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -66.91 297.42 3.18 -63.73 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: 0.31 Total: 36.51 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 4.06 Total: -33.05 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -3.21 Total: -108.61 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -66.91 3.18 -63.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764387719.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.682 kcal (2) G-P(sol) polarization free energy of solvation -66.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds