Wall clock time and date at job start Mon Mar 30 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46412 * 2 1 4 4 C 1.50699 * 109.47193 * 120.00127 * 2 1 3 5 5 H 1.08000 * 120.00005 * 120.00770 * 4 2 1 6 6 C 1.37880 * 119.99921 * 300.00147 * 4 2 1 7 7 N 1.31510 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47220 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46863 * 120.00342 * 8 6 4 11 11 H 1.48498 * 109.47092 * 240.00109 * 8 6 4 12 12 N 1.46499 * 109.47276 * 240.00419 * 2 1 3 13 13 N 1.40105 * 120.00063 * 89.99692 * 12 2 1 14 14 C 1.29736 * 119.99968 * 180.02562 * 13 12 2 15 15 C 1.47496 * 119.99974 * 180.02562 * 14 13 12 16 16 C 1.39700 * 120.11979 * 179.97438 * 15 14 13 17 17 C 1.37912 * 119.91210 * 179.97438 * 16 15 14 18 18 C 1.38546 * 120.15446 * 0.02562 * 17 16 15 19 19 F 1.35102 * 119.87400 * 179.97438 * 18 17 16 20 20 C 1.38770 * 120.24685 * 359.97438 * 18 17 16 21 21 F 1.35099 * 119.96013 * 180.02562 * 20 18 17 22 22 C 1.38122 * 120.08709 * 359.72522 * 20 18 17 23 23 H 1.09007 * 109.46853 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47549 * 299.99472 * 1 2 3 25 25 H 1.08998 * 109.47074 * 60.00006 * 1 2 3 26 26 H 0.97007 * 119.99893 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99984 * 269.99501 * 12 2 1 28 28 H 1.07999 * 120.00073 * 359.97438 * 14 13 12 29 29 H 1.07999 * 120.04453 * 0.02562 * 16 15 14 30 30 H 1.07996 * 119.91862 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.08189 * 180.27691 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1464 -2.2870 3.6037 10 1 3.1465 -0.1874 4.8165 11 1 1.1660 -1.5868 4.8159 12 7 2.0184 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6838 -0.5815 -3.4343 15 6 2.9302 0.1772 -4.6749 16 6 3.3959 -0.4787 -5.8170 17 6 3.6242 0.2348 -6.9749 18 6 3.3934 1.6005 -7.0078 19 9 3.6195 2.2941 -8.1449 20 6 2.9308 2.2587 -5.8770 21 9 2.7071 3.5905 -5.9157 22 6 2.6928 1.5529 -4.7138 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7086 1.1611 3.4845 27 1 2.1801 -1.6466 -1.1722 28 1 2.8639 -1.6460 -3.4076 29 1 3.5760 -1.5433 -5.7935 30 1 3.9839 -0.2722 -7.8580 31 1 2.3285 2.0645 -3.8352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771882229.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:59 Heat of formation + Delta-G solvation = -29.139332 kcal Electronic energy + Delta-G solvation = -17317.882671 eV Core-core repulsion = 14043.106513 eV Total energy + Delta-G solvation = -3274.776158 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.41488 -48.48809 -38.94302 -36.50363 -34.18240 -31.92679 -30.79773 -30.08842 -27.15542 -25.32038 -23.80918 -22.85224 -20.74876 -20.24666 -17.94816 -17.38916 -17.09902 -16.52685 -16.25313 -15.59274 -15.16737 -14.91407 -14.52793 -14.37461 -13.98558 -13.53458 -13.06410 -12.86467 -12.58011 -12.27810 -12.07632 -11.49888 -11.29923 -11.10495 -10.90181 -10.66834 -10.34152 -10.28188 -9.76240 -9.17896 -9.06962 -8.80472 -8.56922 -6.99346 -6.21895 -4.30852 0.70565 1.02285 2.65785 3.18559 3.26249 3.28903 3.57185 3.70165 3.80372 4.28934 4.34195 4.55304 4.82234 5.00315 5.11130 5.19322 5.56253 5.74015 5.90027 5.91703 6.10220 6.26070 6.59242 6.75673 6.81976 6.89661 7.03912 7.47341 7.66305 7.74312 8.01690 8.16845 8.75376 9.11236 9.36409 10.84064 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.042632 B = 0.003675 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.623724 B = 7618.050772 C = 7945.656334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.293 3.707 3 H 0.044 0.956 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.612 5.612 13 N -0.183 5.183 14 C -0.027 4.027 15 C 0.020 3.980 16 C -0.099 4.099 17 C -0.122 4.122 18 C 0.048 3.952 19 F -0.135 7.135 20 C 0.072 3.928 21 F -0.131 7.131 22 C -0.114 4.114 23 H 0.027 0.973 24 H 0.092 0.908 25 H 0.013 0.987 26 H 0.265 0.735 27 H 0.372 0.628 28 H 0.110 0.890 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.818 -2.365 -15.497 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.192 3.808 3 H 0.062 0.938 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.348 5.348 13 N 0.002 4.998 14 C -0.233 4.233 15 C 0.018 3.982 16 C -0.120 4.120 17 C -0.141 4.141 18 C 0.026 3.974 19 F -0.114 7.114 20 C 0.052 3.948 21 F -0.110 7.110 22 C -0.135 4.135 23 H 0.046 0.954 24 H 0.110 0.890 25 H 0.032 0.968 26 H 0.075 0.925 27 H 0.208 0.792 28 H 0.127 0.873 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.375 -1.201 -14.783 15.211 hybrid contribution 0.520 -1.267 0.488 1.454 sum 3.895 -2.467 -14.296 15.021 Atomic orbital electron populations 1.22209 0.98729 0.99335 1.00726 1.18645 0.90346 0.93702 0.78155 0.93808 1.21240 1.32475 1.13425 0.90094 0.92055 1.24862 0.94733 0.94970 0.99021 1.69893 1.35845 1.22476 1.23974 0.86351 0.78636 0.79535 0.82349 1.19746 1.20765 1.20779 1.49198 1.70974 1.08008 1.06623 1.73889 1.03199 1.28499 0.94175 1.23303 1.11124 0.97047 0.91824 1.18308 0.96109 0.91543 0.92288 1.21066 0.99415 1.00523 0.90951 1.20878 1.02084 0.91123 1.00014 1.17721 1.06575 0.90845 0.82212 1.91496 1.92674 1.79266 1.47981 1.17605 1.04402 0.78293 0.94510 1.91521 1.92510 1.30001 1.96953 1.21341 1.00776 0.94302 0.97047 0.95412 0.88998 0.96770 0.92496 0.79202 0.87276 0.84128 0.83866 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.29 37.16 0.35 -3.23 16 2 C 0.29 7.18 3.23 -69.08 -0.22 6.96 16 3 H 0.04 1.19 8.14 -51.92 -0.42 0.77 16 4 C -0.53 -13.83 8.74 -34.44 -0.30 -14.14 16 5 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.05 11.32 55.43 0.63 -23.42 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.21 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.61 -12.71 6.10 -5.88 -0.04 -12.75 16 13 N -0.18 -3.46 10.61 32.16 0.34 -3.12 16 14 C -0.03 -0.40 10.75 -14.67 -0.16 -0.56 16 15 C 0.02 0.27 5.87 -105.05 -0.62 -0.35 16 16 C -0.10 -0.99 9.79 -39.15 -0.38 -1.38 16 17 C -0.12 -1.21 10.01 -39.59 -0.40 -1.60 16 18 C 0.05 0.59 7.31 -39.27 -0.29 0.31 16 19 F -0.14 -1.76 17.17 2.25 0.04 -1.72 16 20 C 0.07 1.00 7.30 -39.43 -0.29 0.71 16 21 F -0.13 -1.95 17.17 2.25 0.04 -1.91 16 22 C -0.11 -1.61 9.55 -39.09 -0.37 -1.98 16 23 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.37 7.05 8.58 -182.59 -1.57 5.48 16 28 H 0.11 1.39 8.02 -52.49 -0.42 0.97 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.15 2.35 7.55 -52.49 -0.40 1.96 16 LS Contribution 287.22 15.07 4.33 4.33 Total: -1.00 -27.42 287.22 -6.81 -34.24 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.36 Total: 2.73 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.77 Total: -13.59 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.93 Total: -39.29 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.42 -6.81 -34.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882229.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.097 kcal (2) G-P(sol) polarization free energy of solvation -27.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds