Wall clock time and date at job start Mon Mar 30 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46412 * 2 1 4 4 C 1.50699 * 109.47193 * 120.00127 * 2 1 3 5 5 H 1.08000 * 120.00005 * 120.00770 * 4 2 1 6 6 C 1.37880 * 119.99921 * 300.00147 * 4 2 1 7 7 N 1.31510 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47220 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46863 * 120.00342 * 8 6 4 11 11 H 1.48498 * 109.47092 * 240.00109 * 8 6 4 12 12 N 1.46499 * 109.47276 * 240.00419 * 2 1 3 13 13 N 1.40105 * 120.00063 * 89.99692 * 12 2 1 14 14 C 1.29736 * 119.99968 * 180.02562 * 13 12 2 15 15 C 1.47496 * 119.99974 * 180.02562 * 14 13 12 16 16 C 1.39700 * 120.11979 * 179.97438 * 15 14 13 17 17 C 1.37912 * 119.91210 * 179.97438 * 16 15 14 18 18 C 1.38546 * 120.15446 * 0.02562 * 17 16 15 19 19 F 1.35102 * 119.87400 * 179.97438 * 18 17 16 20 20 C 1.38770 * 120.24685 * 359.97438 * 18 17 16 21 21 F 1.35099 * 119.96013 * 180.02562 * 20 18 17 22 22 C 1.38122 * 120.08709 * 359.72522 * 20 18 17 23 23 H 1.09007 * 109.46853 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47549 * 299.99472 * 1 2 3 25 25 H 1.08998 * 109.47074 * 60.00006 * 1 2 3 26 26 H 0.97007 * 119.99893 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99984 * 269.99501 * 12 2 1 28 28 H 1.07999 * 120.00073 * 359.97438 * 14 13 12 29 29 H 1.07999 * 120.04453 * 0.02562 * 16 15 14 30 30 H 1.07996 * 119.91862 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.08189 * 180.27691 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1464 -2.2870 3.6037 10 1 3.1465 -0.1874 4.8165 11 1 1.1660 -1.5868 4.8159 12 7 2.0184 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6838 -0.5815 -3.4343 15 6 2.9302 0.1772 -4.6749 16 6 3.3959 -0.4787 -5.8170 17 6 3.6242 0.2348 -6.9749 18 6 3.3934 1.6005 -7.0078 19 9 3.6195 2.2941 -8.1449 20 6 2.9308 2.2587 -5.8770 21 9 2.7071 3.5905 -5.9157 22 6 2.6928 1.5529 -4.7138 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7086 1.1611 3.4845 27 1 2.1801 -1.6466 -1.1722 28 1 2.8639 -1.6460 -3.4076 29 1 3.5760 -1.5433 -5.7935 30 1 3.9839 -0.2722 -7.8580 31 1 2.3285 2.0645 -3.8352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771882229.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:59 Heat of formation + Delta-G solvation = -44.677868 kcal Electronic energy + Delta-G solvation = -17318.556473 eV Core-core repulsion = 14043.106513 eV Total energy + Delta-G solvation = -3275.449959 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.47704 -49.55691 -39.96432 -37.98479 -35.87468 -33.53141 -31.81309 -31.45551 -28.66560 -27.29598 -24.95197 -23.90167 -22.35513 -21.62066 -19.14422 -18.69483 -18.27689 -17.86103 -17.30984 -16.98044 -16.95044 -15.99136 -15.84569 -15.46958 -15.05068 -14.92736 -14.55279 -14.38976 -13.88739 -13.64743 -13.27057 -13.13578 -12.89787 -12.67666 -12.39490 -12.24312 -12.17646 -12.05350 -11.17261 -10.93626 -10.60129 -10.11427 -9.87731 -8.46472 -8.18049 -6.35474 -0.33351 0.06435 1.42913 1.44219 1.52968 1.55922 2.12164 2.45854 2.66168 2.81257 3.11265 3.32582 3.60189 3.79351 4.08573 4.18817 4.45309 4.70335 4.85378 4.87584 4.96002 5.03518 5.04752 5.12597 5.18883 5.40561 5.55874 5.77022 5.77963 5.87563 6.15781 6.38704 6.83263 7.36295 7.74307 8.86841 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.042632 B = 0.003675 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.623724 B = 7618.050772 C = 7945.656334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.304 3.696 3 H 0.001 0.999 4 C -0.546 4.546 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.277 1.277 12 N -0.633 5.633 13 N -0.242 5.242 14 C 0.021 3.979 15 C -0.006 4.006 16 C -0.066 4.066 17 C -0.107 4.107 18 C 0.051 3.949 19 F -0.139 7.139 20 C 0.047 3.953 21 F -0.145 7.145 22 C -0.121 4.121 23 H 0.032 0.968 24 H 0.067 0.933 25 H 0.017 0.983 26 H 0.266 0.734 27 H 0.378 0.622 28 H 0.142 0.858 29 H 0.185 0.815 30 H 0.185 0.815 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.144 -4.835 -17.529 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.201 3.799 3 H 0.019 0.981 4 C -0.585 4.585 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.203 1.203 12 N -0.370 5.370 13 N -0.052 5.052 14 C -0.188 4.188 15 C -0.008 4.008 16 C -0.086 4.086 17 C -0.125 4.125 18 C 0.030 3.970 19 F -0.117 7.117 20 C 0.027 3.973 21 F -0.124 7.124 22 C -0.143 4.143 23 H 0.052 0.948 24 H 0.086 0.914 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.215 0.785 28 H 0.159 0.841 29 H 0.202 0.798 30 H 0.202 0.798 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.703 -3.670 -16.834 17.860 hybrid contribution 0.205 -0.475 0.765 0.924 sum 4.908 -4.145 -16.069 17.305 Atomic orbital electron populations 1.22022 0.98728 0.99210 0.99641 1.18155 0.90320 0.91683 0.79786 0.98116 1.21554 1.32436 1.13530 0.91017 0.91754 1.25714 0.94875 0.95622 1.01995 1.70027 1.36902 1.23809 1.24618 0.85322 0.78124 0.78481 0.78547 1.18868 1.20758 1.20288 1.48525 1.73953 1.07845 1.06653 1.73942 1.07248 1.29302 0.94725 1.23968 1.05354 0.98620 0.90878 1.18436 0.98435 0.91007 0.92944 1.21508 0.95742 1.02337 0.89062 1.21333 1.00241 0.89645 1.01320 1.18019 1.05717 0.91913 0.81378 1.91495 1.92595 1.79648 1.47988 1.17786 1.06233 0.77953 0.95342 1.91479 1.92854 1.31032 1.97057 1.21243 1.01265 0.95244 0.96536 0.94850 0.91394 0.96372 0.92442 0.78453 0.84094 0.79786 0.79757 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.73 9.29 71.98 0.67 -6.06 16 2 C 0.30 15.52 3.23 44.24 0.14 15.66 16 3 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 4 C -0.55 -28.94 8.74 25.60 0.22 -28.72 16 5 H 0.06 3.28 7.79 -2.91 -0.02 3.26 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.92 -51.31 11.32 21.45 0.24 -51.07 16 8 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 9 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 N -0.63 -26.76 6.10 -172.52 -1.05 -27.81 16 13 N -0.24 -9.21 10.61 -52.17 -0.55 -9.77 16 14 C 0.02 0.58 10.75 87.44 0.94 1.52 16 15 C -0.01 -0.13 5.87 -20.14 -0.12 -0.25 16 16 C -0.07 -0.98 9.79 22.55 0.22 -0.76 16 17 C -0.11 -1.56 10.01 22.27 0.22 -1.34 16 18 C 0.05 1.13 7.31 22.47 0.16 1.29 16 19 F -0.14 -3.27 17.17 44.97 0.77 -2.50 16 20 C 0.05 1.27 7.30 22.37 0.16 1.43 16 21 F -0.15 -4.45 17.17 44.97 0.77 -3.67 16 22 C -0.12 -3.43 9.55 22.59 0.22 -3.21 16 23 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 25 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 27 H 0.38 14.29 8.58 -213.32 -1.83 12.46 16 28 H 0.14 2.99 8.02 -2.91 -0.02 2.97 16 29 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 31 H 0.13 4.27 7.55 -2.91 -0.02 4.25 16 Total: -1.00 -62.63 287.22 4.83 -57.79 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -0.67 Total: 12.28 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.29 Total: -19.02 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -1.36 Total: -88.65 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 1.54 Total: -6.17 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -62.63 4.83 -57.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882229.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.116 kcal (2) G-P(sol) polarization free energy of solvation -62.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds