Wall clock time and date at job start Mon Mar 30 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47046 * 2 1 4 4 C 1.50702 * 109.47092 * 120.00306 * 2 1 3 5 5 H 1.07998 * 120.00330 * 119.99802 * 4 2 1 6 6 C 1.37877 * 119.99770 * 299.99897 * 4 2 1 7 7 N 1.31519 * 119.99929 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00139 * 359.97438 * 6 4 2 9 9 H 1.48492 * 109.46918 * 89.99910 * 8 6 4 10 10 H 1.48492 * 109.47009 * 210.00097 * 8 6 4 11 11 H 1.48499 * 109.46645 * 329.99985 * 8 6 4 12 12 N 1.46501 * 109.46822 * 239.99988 * 2 1 3 13 13 N 1.40101 * 120.00222 * 90.00355 * 12 2 1 14 14 C 1.29740 * 120.00305 * 179.97438 * 13 12 2 15 15 C 1.47475 * 119.99965 * 179.97438 * 14 13 12 16 16 C 1.39705 * 120.15621 * 180.02562 * 15 14 13 17 17 C 1.37915 * 119.91447 * 179.72379 * 16 15 14 18 18 C 1.38385 * 120.22569 * 359.97438 * 17 16 15 19 19 C 1.38495 * 120.31623 * 0.02562 * 18 17 16 20 20 F 1.35099 * 119.95926 * 179.97438 * 19 18 17 21 21 C 1.38403 * 120.08667 * 359.95351 * 19 18 17 22 22 F 1.35094 * 120.11989 * 180.02562 * 21 19 18 23 23 H 1.08997 * 109.47046 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46960 * 300.00179 * 1 2 3 25 25 H 1.08993 * 109.46848 * 59.99746 * 1 2 3 26 26 H 0.96994 * 119.99682 * 180.02562 * 7 6 4 27 27 H 0.97007 * 119.99748 * 269.99772 * 12 2 1 28 28 H 1.08000 * 119.99705 * 0.02562 * 14 13 12 29 29 H 1.08006 * 120.04069 * 359.74618 * 16 15 14 30 30 H 1.07991 * 119.88351 * 180.02562 * 17 16 15 31 31 H 1.08004 * 119.84155 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6259 1.2798 2.6542 9 1 -0.8019 0.8745 2.6993 10 1 0.9772 1.9952 3.9070 11 1 0.8493 2.1773 1.4923 12 7 2.0183 -0.6906 -1.1962 13 7 2.2519 0.0299 -2.3748 14 6 2.6847 -0.5816 -3.4340 15 6 2.9300 0.1767 -4.6748 16 6 3.3956 -0.4785 -5.8174 17 6 3.6179 0.2346 -6.9768 18 6 3.3808 1.5975 -7.0126 19 6 2.9191 2.2567 -5.8854 20 9 2.6905 3.5875 -5.9283 21 6 2.6913 1.5537 -4.7152 22 9 2.2405 2.1959 -3.6154 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.9034 -0.5280 4.4375 27 1 2.1800 -1.6468 -1.1721 28 1 2.8646 -1.6462 -3.4073 29 1 3.5809 -1.5423 -5.7930 30 1 3.9774 -0.2725 -7.8599 31 1 3.5573 2.1500 -7.9237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:05 Heat of formation + Delta-G solvation = -13.080719 kcal Electronic energy + Delta-G solvation = -17816.253788 eV Core-core repulsion = 14542.173984 eV Total energy + Delta-G solvation = -3274.079804 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.093 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.28665 -48.27588 -38.90262 -36.68641 -34.29663 -32.11577 -30.79848 -30.33023 -27.77312 -25.19592 -23.84214 -22.74295 -20.84108 -20.35373 -17.81393 -17.60231 -17.07787 -16.48485 -16.16700 -15.52423 -15.43059 -14.87852 -14.73121 -14.24223 -14.04031 -13.36707 -13.23348 -12.87786 -12.74122 -12.24628 -12.15443 -12.06469 -11.69427 -11.33809 -11.05458 -10.78869 -10.25015 -9.78801 -9.60101 -9.29885 -9.13395 -8.74770 -8.70492 -7.12469 -6.23647 -4.26527 0.69937 0.94040 2.65941 3.20839 3.32727 3.35021 3.44998 3.59796 3.80078 4.28115 4.41617 4.60755 4.70636 4.93184 5.00076 5.10716 5.48341 5.72116 5.79551 5.96775 6.03196 6.09613 6.25689 6.35170 6.52579 6.56994 6.74812 6.88302 7.26799 7.45951 7.86102 8.34430 8.75419 9.01099 9.36166 10.88694 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.036356 B = 0.004756 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.987047 B = 5886.358181 C = 6411.546118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.269 3.731 3 H 0.044 0.956 4 C -0.535 4.535 5 H 0.079 0.921 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.887 3.113 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.607 5.607 13 N -0.175 5.175 14 C -0.025 4.025 15 C -0.011 4.011 16 C -0.097 4.097 17 C -0.101 4.101 18 C -0.139 4.139 19 C 0.064 3.936 20 F -0.132 7.132 21 C 0.080 3.920 22 F -0.106 7.106 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.268 0.732 27 H 0.377 0.623 28 H 0.116 0.884 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 1.578 -20.617 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.165 3.835 3 H 0.062 0.938 4 C -0.574 4.574 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.717 3.283 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.343 5.343 13 N 0.010 4.990 14 C -0.231 4.231 15 C -0.015 4.015 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.159 4.159 19 C 0.044 3.956 20 F -0.111 7.111 21 C 0.057 3.943 22 F -0.085 7.085 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.214 0.786 28 H 0.133 0.867 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.316 2.607 -19.749 19.964 hybrid contribution -0.465 -0.132 0.325 0.583 sum 0.851 2.475 -19.423 19.599 Atomic orbital electron populations 1.22576 0.99695 1.00947 0.99111 1.18949 0.89410 0.94359 0.80813 0.93778 1.21028 1.33324 1.14616 0.88416 0.90303 1.24811 0.95511 0.96764 0.95374 1.69864 1.44814 1.40135 0.98064 0.86847 0.80506 0.83457 0.77486 1.20238 1.22047 1.18751 1.48738 1.71183 1.08072 1.06298 1.74139 1.03078 1.27796 0.93944 1.23296 1.10967 0.97297 0.91547 1.18446 0.99249 0.89991 0.93804 1.21115 0.99051 1.00623 0.90982 1.20884 0.99751 0.92918 0.98412 1.21035 1.02135 0.95546 0.97185 1.17649 1.05277 0.78214 0.94501 1.91515 1.92532 1.30113 1.96937 1.17834 1.02491 0.90686 0.83266 1.91624 1.85733 1.80839 1.50257 0.92845 0.93391 0.94649 0.92197 0.78555 0.86689 0.84181 0.84384 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 9.00 37.16 0.33 -3.34 16 2 C 0.27 6.49 2.82 -69.08 -0.20 6.29 16 3 H 0.04 1.14 7.20 -51.93 -0.37 0.77 16 4 C -0.53 -14.68 9.32 -34.44 -0.32 -15.00 16 5 H 0.08 2.30 8.03 -52.49 -0.42 1.88 16 6 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 7 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 8 Si 0.89 21.63 24.38 -169.99 -4.14 17.49 16 9 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 12 N -0.61 -12.85 6.10 -5.88 -0.04 -12.89 16 13 N -0.18 -3.47 9.53 32.16 0.31 -3.16 16 14 C -0.02 -0.39 10.75 -14.67 -0.16 -0.54 16 15 C -0.01 -0.16 5.87 -105.00 -0.62 -0.77 16 16 C -0.10 -0.93 9.79 -39.15 -0.38 -1.31 16 17 C -0.10 -0.81 10.03 -39.65 -0.40 -1.21 16 18 C -0.14 -1.32 10.02 -39.43 -0.39 -1.71 16 19 C 0.06 0.84 7.30 -39.43 -0.29 0.55 16 20 F -0.13 -1.87 17.18 2.25 0.04 -1.83 16 21 C 0.08 1.23 7.29 -38.93 -0.28 0.95 16 22 F -0.11 -2.00 15.27 2.25 0.03 -1.97 16 23 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.38 7.33 8.58 -182.59 -1.57 5.77 16 28 H 0.12 1.50 8.02 -52.49 -0.42 1.08 16 29 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 31 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 278.41 15.07 4.20 4.20 Total: -1.00 -30.87 278.41 -5.88 -36.75 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.25 Total: 1.15 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -2.80 Total: -13.97 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 1.04 Total: -41.81 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.07 Total: -3.80 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.87 -5.88 -36.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.667 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds