Wall clock time and date at job start Mon Mar 30 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47046 * 2 1 4 4 C 1.50702 * 109.47092 * 120.00306 * 2 1 3 5 5 H 1.07998 * 120.00330 * 119.99802 * 4 2 1 6 6 C 1.37877 * 119.99770 * 299.99897 * 4 2 1 7 7 N 1.31519 * 119.99929 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00139 * 359.97438 * 6 4 2 9 9 H 1.48492 * 109.46918 * 89.99910 * 8 6 4 10 10 H 1.48492 * 109.47009 * 210.00097 * 8 6 4 11 11 H 1.48499 * 109.46645 * 329.99985 * 8 6 4 12 12 N 1.46501 * 109.46822 * 239.99988 * 2 1 3 13 13 N 1.40101 * 120.00222 * 90.00355 * 12 2 1 14 14 C 1.29740 * 120.00305 * 179.97438 * 13 12 2 15 15 C 1.47475 * 119.99965 * 179.97438 * 14 13 12 16 16 C 1.39705 * 120.15621 * 180.02562 * 15 14 13 17 17 C 1.37915 * 119.91447 * 179.72379 * 16 15 14 18 18 C 1.38385 * 120.22569 * 359.97438 * 17 16 15 19 19 C 1.38495 * 120.31623 * 0.02562 * 18 17 16 20 20 F 1.35099 * 119.95926 * 179.97438 * 19 18 17 21 21 C 1.38403 * 120.08667 * 359.95351 * 19 18 17 22 22 F 1.35094 * 120.11989 * 180.02562 * 21 19 18 23 23 H 1.08997 * 109.47046 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46960 * 300.00179 * 1 2 3 25 25 H 1.08993 * 109.46848 * 59.99746 * 1 2 3 26 26 H 0.96994 * 119.99682 * 180.02562 * 7 6 4 27 27 H 0.97007 * 119.99748 * 269.99772 * 12 2 1 28 28 H 1.08000 * 119.99705 * 0.02562 * 14 13 12 29 29 H 1.08006 * 120.04069 * 359.74618 * 16 15 14 30 30 H 1.07991 * 119.88351 * 180.02562 * 17 16 15 31 31 H 1.08004 * 119.84155 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6259 1.2798 2.6542 9 1 -0.8019 0.8745 2.6993 10 1 0.9772 1.9952 3.9070 11 1 0.8493 2.1773 1.4923 12 7 2.0183 -0.6906 -1.1962 13 7 2.2519 0.0299 -2.3748 14 6 2.6847 -0.5816 -3.4340 15 6 2.9300 0.1767 -4.6748 16 6 3.3956 -0.4785 -5.8174 17 6 3.6179 0.2346 -6.9768 18 6 3.3808 1.5975 -7.0126 19 6 2.9191 2.2567 -5.8854 20 9 2.6905 3.5875 -5.9283 21 6 2.6913 1.5537 -4.7152 22 9 2.2405 2.1959 -3.6154 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.9034 -0.5280 4.4375 27 1 2.1800 -1.6468 -1.1721 28 1 2.8646 -1.6462 -3.4073 29 1 3.5809 -1.5423 -5.7930 30 1 3.9774 -0.2725 -7.8599 31 1 3.5573 2.1500 -7.9237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:04 Heat of formation + Delta-G solvation = -33.908442 kcal Electronic energy + Delta-G solvation = -17817.156946 eV Core-core repulsion = 14542.173984 eV Total energy + Delta-G solvation = -3274.982962 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.37142 -49.43927 -39.82410 -38.18086 -35.97841 -33.91572 -32.12411 -31.22610 -29.20192 -27.21121 -24.99450 -23.67107 -22.39679 -21.77326 -19.28142 -18.79946 -18.22571 -17.90734 -17.25896 -17.22079 -16.80417 -15.90347 -15.82992 -15.59275 -15.21000 -15.10762 -14.82753 -14.30233 -14.14392 -13.81794 -13.52122 -13.27174 -12.85833 -12.74686 -12.56097 -12.32914 -12.11756 -11.56565 -11.36302 -10.96937 -10.87402 -10.21048 -9.67028 -8.58394 -8.40456 -6.47289 -0.25080 0.04326 1.26669 1.34182 1.43961 1.55940 2.02490 2.24429 2.65323 2.86564 2.95261 3.46844 3.66645 3.83121 3.99574 4.27904 4.38508 4.43000 4.56515 4.69473 4.84147 4.93750 4.96191 5.09453 5.15210 5.26838 5.34391 5.45173 5.59334 5.85847 6.02957 6.40944 6.58657 7.19084 7.62152 8.75243 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.036356 B = 0.004756 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.987047 B = 5886.358181 C = 6411.546118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.279 3.721 3 H 0.020 0.980 4 C -0.536 4.536 5 H 0.047 0.953 6 C 0.028 3.972 7 N -0.936 5.936 8 Si 0.945 3.055 9 H -0.258 1.258 10 H -0.291 1.291 11 H -0.259 1.259 12 N -0.631 5.631 13 N -0.235 5.235 14 C 0.018 3.982 15 C -0.046 4.046 16 C -0.072 4.072 17 C -0.083 4.083 18 C -0.116 4.116 19 C 0.039 3.961 20 F -0.146 7.146 21 C 0.044 3.956 22 F -0.139 7.139 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.271 0.729 27 H 0.379 0.621 28 H 0.145 0.855 29 H 0.178 0.822 30 H 0.189 0.811 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 1.110 -24.542 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.174 3.826 3 H 0.038 0.962 4 C -0.575 4.575 5 H 0.065 0.935 6 C -0.172 4.172 7 N -0.575 5.575 8 Si 0.772 3.228 9 H -0.183 1.183 10 H -0.218 1.218 11 H -0.184 1.184 12 N -0.367 5.367 13 N -0.045 5.045 14 C -0.191 4.191 15 C -0.049 4.049 16 C -0.092 4.092 17 C -0.101 4.101 18 C -0.136 4.136 19 C 0.019 3.981 20 F -0.125 7.125 21 C 0.022 3.978 22 F -0.118 7.118 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.217 0.783 28 H 0.162 0.838 29 H 0.195 0.805 30 H 0.207 0.793 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.553 2.141 -23.698 23.845 hybrid contribution -0.339 -0.068 1.124 1.175 sum 1.215 2.073 -22.574 22.702 Atomic orbital electron populations 1.22445 0.98259 1.01404 0.99367 1.18505 0.90428 0.92677 0.81032 0.96218 1.21263 1.32412 1.13600 0.90206 0.93509 1.25598 0.96881 0.99653 0.95021 1.69984 1.46704 1.42106 0.98710 0.85913 0.79627 0.79910 0.77394 1.18311 1.21775 1.18384 1.48203 1.74195 1.07807 1.06518 1.74211 1.07371 1.28429 0.94503 1.24048 1.05270 0.98872 0.90923 1.18659 1.02302 0.89440 0.94532 1.21630 0.95698 1.02352 0.89554 1.21494 0.97245 0.92067 0.99298 1.21568 0.98856 0.96470 0.96657 1.18017 1.07010 0.77919 0.95172 1.91475 1.92881 1.31143 1.97012 1.18410 1.04222 0.91906 0.83283 1.91532 1.86558 1.81608 1.52109 0.92272 0.93869 0.93423 0.91936 0.78282 0.83804 0.80498 0.79332 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.00 9.00 71.98 0.65 -6.35 16 2 C 0.28 13.92 2.82 44.25 0.12 14.04 16 3 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 4 C -0.54 -30.62 9.32 25.60 0.24 -30.38 16 5 H 0.05 2.89 8.03 -2.91 -0.02 2.87 16 6 C 0.03 1.63 5.45 84.65 0.46 2.09 16 7 N -0.94 -57.46 13.96 21.45 0.30 -57.16 16 8 Si 0.95 45.34 24.38 68.60 1.67 47.02 16 9 H -0.26 -11.54 6.87 99.48 0.68 -10.86 16 10 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.26 -12.21 6.53 99.48 0.65 -11.56 16 12 N -0.63 -27.55 6.10 -172.52 -1.05 -28.60 16 13 N -0.24 -9.48 9.53 -52.18 -0.50 -9.97 16 14 C 0.02 0.54 10.75 87.44 0.94 1.48 16 15 C -0.05 -1.16 5.87 -20.11 -0.12 -1.28 16 16 C -0.07 -1.00 9.79 22.55 0.22 -0.78 16 17 C -0.08 -0.80 10.03 22.23 0.22 -0.57 16 18 C -0.12 -1.65 10.02 22.37 0.22 -1.43 16 19 C 0.04 0.96 7.30 22.37 0.16 1.12 16 20 F -0.15 -4.10 17.18 44.97 0.77 -3.33 16 21 C 0.04 1.35 7.29 22.69 0.17 1.51 16 22 F -0.14 -5.51 15.27 44.97 0.69 -4.83 16 23 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.04 1.94 3.27 -2.39 -0.01 1.93 16 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.38 15.27 8.58 -213.31 -1.83 13.44 16 28 H 0.14 3.37 8.02 -2.91 -0.02 3.35 16 29 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 30 H 0.19 0.10 8.06 -2.92 -0.02 0.08 16 31 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -72.80 278.41 4.43 -68.37 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.74 Total: 9.06 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 3.29 Total: -20.55 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -1.25 Total: -95.74 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 1.46 Total: -8.15 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.67 Total: 47.02 kcal Total: -72.80 4.43 -68.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.461 kcal (2) G-P(sol) polarization free energy of solvation -72.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds