Wall clock time and date at job start Mon Mar 30 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 N 1.40105 * 120.00129 * 270.00290 * 12 2 1 14 14 C 1.29746 * 120.00041 * 180.02562 * 13 12 2 15 15 C 1.47476 * 119.99756 * 180.02562 * 14 13 12 16 16 C 1.39673 * 120.13869 * 179.72050 * 15 14 13 17 17 C 1.37889 * 119.88804 * 179.71483 * 16 15 14 18 18 C 1.38618 * 120.18014 * 0.55969 * 17 16 15 19 19 F 1.35102 * 119.85396 * 179.73769 * 18 17 16 20 20 C 1.38523 * 120.28940 * 359.71949 * 18 17 16 21 21 C 1.38150 * 120.10587 * 359.97438 * 20 18 17 22 22 F 1.35100 * 120.08908 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96998 * 120.00346 * 90.00694 * 12 2 1 28 28 H 1.08002 * 119.99807 * 359.97438 * 14 13 12 29 29 H 1.08005 * 120.05783 * 359.97438 * 16 15 14 30 30 H 1.08004 * 119.90674 * 180.25362 * 17 16 15 31 31 H 1.08009 * 119.94484 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 7 2.2517 0.0301 2.3748 14 6 2.6847 -0.5814 3.4341 15 6 2.9299 0.1770 4.6749 16 6 3.3904 -0.4792 5.8186 17 6 3.6235 0.2360 6.9742 18 6 3.3910 1.6021 7.0071 19 9 3.6166 2.2955 8.1445 20 6 2.9288 2.2595 5.8789 21 6 2.6972 1.5557 4.7129 22 9 2.2459 2.1972 3.6128 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 2.1801 -1.6466 1.1723 28 1 2.8647 -1.6460 3.4074 29 1 3.5676 -1.5444 5.7967 30 1 3.9835 -0.2705 7.8576 31 1 2.7499 3.3242 5.9106 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771892330.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:19 Heat of formation + Delta-G solvation = -23.315158 kcal Electronic energy + Delta-G solvation = -17574.013622 eV Core-core repulsion = 14299.490019 eV Total energy + Delta-G solvation = -3274.523603 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.02085 -48.54356 -38.75447 -36.45861 -34.14094 -31.90544 -30.92224 -29.96488 -27.06795 -25.26514 -23.39314 -23.07625 -20.69889 -20.20271 -18.07384 -17.42445 -16.82139 -15.91394 -15.87336 -15.56030 -15.24432 -15.06459 -14.82331 -14.19801 -13.95132 -13.52561 -12.88512 -12.64830 -12.51658 -12.09174 -11.92766 -11.47049 -11.41655 -11.06242 -10.90357 -10.63241 -10.28348 -10.25433 -9.60557 -9.15179 -9.04828 -8.76492 -8.51393 -6.90288 -6.16846 -4.25869 0.76153 1.04519 2.74877 3.23490 3.28371 3.29438 3.64381 3.69276 3.93175 4.32744 4.46564 4.58508 4.77156 4.97695 5.15141 5.16959 5.61862 5.78377 5.90031 5.96949 6.09356 6.20598 6.61553 6.79919 6.87627 6.96343 7.10509 7.53047 7.72519 7.80193 8.08102 8.23147 8.80182 9.19647 9.40875 10.89022 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.049914 B = 0.003916 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.829324 B = 7148.028890 C = 7394.726534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.295 3.705 3 H 0.044 0.956 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.613 5.613 13 N -0.173 5.173 14 C -0.032 4.032 15 C -0.045 4.045 16 C -0.061 4.061 17 C -0.163 4.163 18 C 0.112 3.888 19 F -0.138 7.138 20 C -0.192 4.192 21 C 0.143 3.857 22 F -0.107 7.107 23 H 0.026 0.974 24 H 0.013 0.987 25 H 0.091 0.909 26 H 0.266 0.734 27 H 0.370 0.630 28 H 0.110 0.890 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.953 -1.544 16.427 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.193 3.807 3 H 0.062 0.938 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.210 1.210 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.349 5.349 13 N 0.012 4.988 14 C -0.239 4.239 15 C -0.048 4.048 16 C -0.082 4.082 17 C -0.182 4.182 18 C 0.092 3.908 19 F -0.117 7.117 20 C -0.212 4.212 21 C 0.121 3.879 22 F -0.085 7.085 23 H 0.045 0.955 24 H 0.032 0.968 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.206 0.794 28 H 0.127 0.873 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.494 -0.397 15.661 16.050 hybrid contribution 0.499 -1.407 -0.664 1.634 sum 3.993 -1.804 14.996 15.623 Atomic orbital electron populations 1.22199 0.98797 0.99225 1.00703 1.18611 0.90304 0.93718 0.78073 0.93783 1.21177 1.32538 1.13402 0.90169 0.92207 1.24861 0.94765 0.94979 0.98961 1.69882 1.35786 1.22429 1.24110 0.86466 0.79192 0.79570 0.81636 1.21028 1.20147 1.20155 1.49213 1.71031 1.07899 1.06778 1.74148 1.02781 1.27883 0.93998 1.23247 1.11729 0.97068 0.91822 1.18619 1.01368 0.91030 0.93820 1.20846 0.96905 1.00250 0.90179 1.20990 1.04931 0.92182 1.00066 1.17314 1.01444 0.89927 0.82152 1.91499 1.92370 1.79465 1.48335 1.20963 1.06517 1.01883 0.91856 1.17439 0.97444 0.89786 0.83253 1.91646 1.85350 1.81002 1.50470 0.95497 0.96767 0.89040 0.92427 0.79400 0.87264 0.83903 0.84256 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.29 37.16 0.35 -3.35 16 2 C 0.29 7.53 3.23 -69.09 -0.22 7.30 16 3 H 0.04 1.26 8.14 -51.92 -0.42 0.84 16 4 C -0.53 -14.25 8.74 -34.44 -0.30 -14.55 16 5 H 0.06 1.55 7.79 -52.49 -0.41 1.14 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.61 -13.47 6.10 -5.88 -0.04 -13.51 16 13 N -0.17 -3.56 9.53 32.16 0.31 -3.25 16 14 C -0.03 -0.53 10.75 -14.67 -0.16 -0.69 16 15 C -0.04 -0.64 5.87 -104.99 -0.62 -1.25 16 16 C -0.06 -0.64 9.78 -39.17 -0.38 -1.02 16 17 C -0.16 -1.59 10.01 -39.57 -0.40 -1.98 16 18 C 0.11 1.28 7.30 -39.34 -0.29 0.99 16 19 F -0.14 -1.58 17.26 2.25 0.04 -1.54 16 20 C -0.19 -2.41 9.99 -39.51 -0.39 -2.81 16 21 C 0.14 2.16 7.28 -39.00 -0.28 1.87 16 22 F -0.11 -1.95 15.35 2.25 0.03 -1.92 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 26 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.37 7.38 8.58 -182.60 -1.57 5.82 16 28 H 0.11 1.51 8.02 -52.49 -0.42 1.09 16 29 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 30 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 31 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 285.34 15.07 4.30 4.30 Total: -1.00 -28.67 285.34 -6.92 -35.60 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.38 Total: 2.47 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -2.79 Total: -13.77 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.90 Total: -40.73 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.07 Total: -3.46 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.67 -6.92 -35.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771892330.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.283 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds