Wall clock time and date at job start Mon Mar 30 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99783 * 2 1 4 4 H 1.48507 * 109.46825 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47244 * 299.99620 * 3 2 1 6 6 H 1.48502 * 109.47181 * 60.00395 * 3 2 1 7 7 C 1.37879 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00178 * 175.14460 * 7 2 1 9 9 C 1.50706 * 119.99755 * 355.41540 * 7 2 1 10 10 C 1.52999 * 115.55188 * 274.92566 * 9 7 2 11 11 O 1.45193 * 109.46941 * 296.15307 * 10 9 7 12 12 C 1.34804 * 116.99613 * 184.87936 * 11 10 9 13 13 O 1.21519 * 120.00096 * 5.10378 * 12 11 10 14 14 C 1.47154 * 119.99523 * 185.10646 * 12 11 10 15 15 F 1.35097 * 120.00787 * 5.11152 * 14 12 11 16 16 C 1.33203 * 119.99394 * 185.11375 * 14 12 11 17 17 C 1.51403 * 136.31836 * 359.62748 * 16 14 12 18 18 C 1.53376 * 87.52017 * 206.05743 * 17 16 14 19 19 C 1.51405 * 136.31594 * 179.97438 * 16 14 12 20 20 C 1.53001 * 117.49523 * 129.25852 * 9 7 2 21 21 C 1.53002 * 117.49700 * 60.60239 * 9 7 2 22 22 H 0.97001 * 120.00013 * 4.99919 * 1 2 3 23 23 H 1.08997 * 109.46860 * 56.15778 * 10 9 7 24 24 H 1.09001 * 109.46696 * 176.15652 * 10 9 7 25 25 H 1.09004 * 113.56404 * 320.64079 * 17 16 14 26 26 H 1.09002 * 113.56314 * 91.37171 * 17 16 14 27 27 H 1.09004 * 113.97291 * 220.29142 * 18 17 16 28 28 H 1.09004 * 113.59803 * 88.79780 * 18 17 16 29 29 H 1.09003 * 113.56132 * 268.62792 * 19 16 14 30 30 H 1.09007 * 113.55987 * 39.36112 * 19 16 14 31 31 H 1.09003 * 117.49855 * 0.02562 * 20 9 7 32 32 H 1.08997 * 117.50233 * 145.01952 * 20 9 7 33 33 H 1.09000 * 117.49676 * 214.97648 * 21 9 7 34 34 H 1.09005 * 117.49807 * 359.97037 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0817 -1.1957 -0.0797 9 6 1.2546 -2.4971 0.1032 10 6 0.9190 -2.9541 1.5243 11 8 2.1481 -3.2154 2.2516 12 6 2.0276 -3.7255 3.4936 13 8 0.9321 -4.0325 3.9206 14 6 3.2226 -3.9106 4.3320 15 9 4.4258 -3.4748 3.8991 16 6 3.1179 -4.5079 5.5180 17 6 2.0029 -5.1117 6.3453 18 6 2.8495 -4.8070 7.5874 19 6 4.0600 -4.8805 6.6432 20 6 1.5730 -3.5796 -0.9302 21 6 0.2452 -2.8211 -1.0001 22 1 -0.4850 0.8369 -0.0732 23 1 0.3545 -2.1728 2.0333 24 1 0.3215 -3.8647 1.4815 25 1 1.0731 -4.5443 6.3037 26 1 1.8568 -6.1773 6.1682 27 1 2.8302 -5.5947 8.3406 28 1 2.6739 -3.8144 8.0023 29 1 4.4779 -5.8827 6.5478 30 1 4.8175 -4.1234 6.8460 31 1 2.3251 -3.3493 -1.6848 32 1 1.5429 -4.6172 -0.5979 33 1 -0.6578 -3.3600 -0.7135 34 1 0.1233 -2.0914 -1.8006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820138817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:20 Heat of formation + Delta-G solvation = -66.155985 kcal Electronic energy + Delta-G solvation = -18553.149203 eV Core-core repulsion = 15367.935436 eV Total energy + Delta-G solvation = -3185.213767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.65765 -39.88768 -38.65917 -36.77627 -35.29318 -31.94591 -30.49840 -27.08951 -25.97718 -25.33619 -23.72903 -21.32590 -20.97751 -19.31740 -18.52754 -17.74758 -16.70718 -16.42961 -15.96412 -15.60335 -15.43754 -14.80763 -14.52490 -14.03658 -13.49448 -13.07846 -12.67711 -12.49505 -12.30619 -12.13314 -11.93385 -11.64302 -11.34561 -10.96881 -10.88899 -10.73961 -10.50883 -10.27792 -10.09477 -9.96310 -9.50370 -8.99868 -8.89391 -8.45573 -8.21294 -6.05092 -4.11912 1.01873 2.92566 3.04421 3.28673 3.37121 3.42733 4.01753 4.32938 4.40227 4.44882 4.74122 4.90306 5.16211 5.22612 5.35388 5.39398 5.46153 5.60190 5.83515 5.92167 6.00461 6.01636 6.17962 6.26120 6.35082 6.47718 6.65211 6.73933 7.01928 7.05537 7.32682 7.49865 7.87973 8.16644 8.39420 8.90639 9.54049 11.02783 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.005600 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.939656 B = 4998.944851 C = 5459.984363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.486 4.486 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.115 3.885 11 O -0.323 6.323 12 C 0.488 3.512 13 O -0.501 6.501 14 C 0.057 3.943 15 F -0.121 7.121 16 C -0.128 4.128 17 C -0.086 4.086 18 C -0.139 4.139 19 C -0.094 4.094 20 C -0.206 4.206 21 C -0.137 4.137 22 H 0.261 0.739 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 -9.414 11.592 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.524 4.524 8 H 0.082 0.918 9 C 0.030 3.970 10 C 0.042 3.958 11 O -0.238 6.238 12 C 0.331 3.669 13 O -0.393 6.393 14 C 0.036 3.964 15 F -0.100 7.100 16 C -0.130 4.130 17 C -0.123 4.123 18 C -0.176 4.176 19 C -0.131 4.131 20 C -0.243 4.243 21 C -0.174 4.174 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.318 -9.338 11.695 15.577 hybrid contribution 0.459 1.108 -0.211 1.218 sum 4.776 -8.230 11.484 14.914 Atomic orbital electron populations 1.69995 1.05873 1.26792 1.49417 1.25017 0.94891 0.99094 0.94498 0.86525 0.80412 0.83516 0.77585 1.19505 1.20979 1.20930 1.20453 0.93024 0.88206 1.50716 0.91773 1.18808 0.99843 0.93982 0.84363 1.23016 0.81406 0.98274 0.93084 1.86713 1.39658 1.72398 1.25041 1.21112 0.88003 0.75562 0.82196 1.90814 1.26908 1.48220 1.73348 1.17570 0.80252 1.06041 0.92515 1.91540 1.41269 1.87712 1.89451 1.23533 1.02537 0.95583 0.91374 1.22069 0.96975 1.01422 0.91850 1.22739 0.95895 1.02877 0.96137 1.22188 0.96715 1.02682 0.91474 1.23017 1.00342 0.95581 1.05356 1.22520 0.90821 1.01327 1.02757 0.92954 0.90746 0.93687 0.88971 0.87956 0.90034 0.89423 0.87758 0.90028 0.90002 0.91602 0.91729 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.01 12.65 55.43 0.70 -24.31 16 2 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.49 -13.51 8.75 -34.44 -0.30 -13.81 16 8 H 0.06 1.81 7.82 -52.49 -0.41 1.40 16 9 C 0.03 0.77 1.70 -155.66 -0.26 0.51 16 10 C 0.12 2.76 5.39 37.16 0.20 2.96 16 11 O -0.32 -7.46 10.09 -40.78 -0.41 -7.88 16 12 C 0.49 9.83 7.90 34.35 0.27 10.10 16 13 O -0.50 -10.38 14.84 -19.28 -0.29 -10.67 16 14 C 0.06 0.96 7.43 -37.72 -0.28 0.68 16 15 F -0.12 -2.13 17.20 2.25 0.04 -2.09 16 16 C -0.13 -1.71 6.88 -100.42 -0.69 -2.40 16 17 C -0.09 -0.95 7.04 -27.56 -0.19 -1.14 16 18 C -0.14 -1.16 8.17 -26.19 -0.21 -1.37 16 19 C -0.09 -0.87 7.96 -27.40 -0.22 -1.09 16 20 C -0.21 -4.58 9.96 -26.69 -0.27 -4.84 16 21 C -0.14 -3.21 9.15 -26.69 -0.24 -3.45 16 22 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 23 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 24 H 0.04 1.00 7.93 -51.93 -0.41 0.59 16 25 H 0.09 1.16 7.42 -51.93 -0.39 0.78 16 26 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 2.27 8.14 -51.93 -0.42 1.85 16 LS Contribution 304.31 15.07 4.59 4.59 Total: -1.00 -29.88 304.31 -7.26 -37.15 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.57 Total: -1.08 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.30 Total: -12.08 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.70 Total: -24.31 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.70 Total: -18.54 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.88 -7.26 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820138817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.009 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds