Wall clock time and date at job start Mon Mar 30 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99783 * 2 1 4 4 H 1.48507 * 109.46825 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47244 * 299.99620 * 3 2 1 6 6 H 1.48502 * 109.47181 * 60.00395 * 3 2 1 7 7 C 1.37879 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00178 * 175.14460 * 7 2 1 9 9 C 1.50706 * 119.99755 * 355.41540 * 7 2 1 10 10 C 1.52999 * 115.55188 * 274.92566 * 9 7 2 11 11 O 1.45193 * 109.46941 * 296.15307 * 10 9 7 12 12 C 1.34804 * 116.99613 * 184.87936 * 11 10 9 13 13 O 1.21519 * 120.00096 * 5.10378 * 12 11 10 14 14 C 1.47154 * 119.99523 * 185.10646 * 12 11 10 15 15 F 1.35097 * 120.00787 * 5.11152 * 14 12 11 16 16 C 1.33203 * 119.99394 * 185.11375 * 14 12 11 17 17 C 1.51403 * 136.31836 * 359.62748 * 16 14 12 18 18 C 1.53376 * 87.52017 * 206.05743 * 17 16 14 19 19 C 1.51405 * 136.31594 * 179.97438 * 16 14 12 20 20 C 1.53001 * 117.49523 * 129.25852 * 9 7 2 21 21 C 1.53002 * 117.49700 * 60.60239 * 9 7 2 22 22 H 0.97001 * 120.00013 * 4.99919 * 1 2 3 23 23 H 1.08997 * 109.46860 * 56.15778 * 10 9 7 24 24 H 1.09001 * 109.46696 * 176.15652 * 10 9 7 25 25 H 1.09004 * 113.56404 * 320.64079 * 17 16 14 26 26 H 1.09002 * 113.56314 * 91.37171 * 17 16 14 27 27 H 1.09004 * 113.97291 * 220.29142 * 18 17 16 28 28 H 1.09004 * 113.59803 * 88.79780 * 18 17 16 29 29 H 1.09003 * 113.56132 * 268.62792 * 19 16 14 30 30 H 1.09007 * 113.55987 * 39.36112 * 19 16 14 31 31 H 1.09003 * 117.49855 * 0.02562 * 20 9 7 32 32 H 1.08997 * 117.50233 * 145.01952 * 20 9 7 33 33 H 1.09000 * 117.49676 * 214.97648 * 21 9 7 34 34 H 1.09005 * 117.49807 * 359.97037 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0817 -1.1957 -0.0797 9 6 1.2546 -2.4971 0.1032 10 6 0.9190 -2.9541 1.5243 11 8 2.1481 -3.2154 2.2516 12 6 2.0276 -3.7255 3.4936 13 8 0.9321 -4.0325 3.9206 14 6 3.2226 -3.9106 4.3320 15 9 4.4258 -3.4748 3.8991 16 6 3.1179 -4.5079 5.5180 17 6 2.0029 -5.1117 6.3453 18 6 2.8495 -4.8070 7.5874 19 6 4.0600 -4.8805 6.6432 20 6 1.5730 -3.5796 -0.9302 21 6 0.2452 -2.8211 -1.0001 22 1 -0.4850 0.8369 -0.0732 23 1 0.3545 -2.1728 2.0333 24 1 0.3215 -3.8647 1.4815 25 1 1.0731 -4.5443 6.3037 26 1 1.8568 -6.1773 6.1682 27 1 2.8302 -5.5947 8.3406 28 1 2.6739 -3.8144 8.0023 29 1 4.4779 -5.8827 6.5478 30 1 4.8175 -4.1234 6.8460 31 1 2.3251 -3.3493 -1.6848 32 1 1.5429 -4.6172 -0.5979 33 1 -0.6578 -3.3600 -0.7135 34 1 0.1233 -2.0914 -1.8006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820138817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:20 Heat of formation + Delta-G solvation = -81.490645 kcal Electronic energy + Delta-G solvation = -18553.814163 eV Core-core repulsion = 15367.935436 eV Total energy + Delta-G solvation = -3185.878727 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.91332 -41.44943 -39.69744 -38.55111 -37.02588 -34.04518 -31.70666 -28.86730 -27.40325 -26.78993 -24.95966 -23.00383 -22.32246 -21.25975 -19.73760 -19.26510 -18.46419 -17.81331 -17.46408 -17.00158 -16.74665 -16.45398 -15.99273 -15.76349 -15.16962 -14.61984 -14.11555 -13.86364 -13.59520 -13.42165 -13.26229 -12.99972 -12.90708 -12.88657 -12.43677 -12.24327 -12.09856 -11.80161 -11.75230 -11.49111 -11.25553 -10.92660 -10.49620 -10.14477 -10.10994 -8.15535 -6.28296 -0.23263 1.36867 1.39961 1.45916 1.51765 1.57761 2.39477 2.93490 3.10444 3.16365 3.46805 3.54626 3.69639 4.06463 4.08519 4.26114 4.31617 4.37406 4.60031 4.64388 4.67411 4.75886 4.86883 4.94360 5.00343 5.08282 5.15142 5.22054 5.31361 5.36084 5.49457 5.61648 5.72640 6.31813 6.56050 6.76398 7.40183 8.92062 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.005600 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.939656 B = 4998.944851 C = 5459.984363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.282 1.282 7 C -0.504 4.504 8 H 0.050 0.950 9 C -0.006 4.006 10 C 0.128 3.872 11 O -0.344 6.344 12 C 0.483 3.517 13 O -0.517 6.517 14 C 0.004 3.996 15 F -0.133 7.133 16 C -0.098 4.098 17 C -0.097 4.097 18 C -0.123 4.123 19 C -0.089 4.089 20 C -0.181 4.181 21 C -0.133 4.133 22 H 0.263 0.737 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.770 -10.716 13.438 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.208 1.208 7 C -0.542 4.542 8 H 0.068 0.932 9 C -0.006 4.006 10 C 0.055 3.945 11 O -0.260 6.260 12 C 0.329 3.671 13 O -0.409 6.409 14 C -0.016 4.016 15 F -0.112 7.112 16 C -0.100 4.100 17 C -0.134 4.134 18 C -0.160 4.160 19 C -0.125 4.125 20 C -0.218 4.218 21 C -0.171 4.171 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.144 0.856 27 H 0.134 0.866 28 H 0.106 0.894 29 H 0.153 0.847 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.316 -10.649 13.546 18.032 hybrid contribution 0.146 1.413 -0.634 1.556 sum 5.462 -9.235 12.911 16.788 Atomic orbital electron populations 1.70079 1.06924 1.27549 1.50032 1.25689 0.95700 1.01986 0.94207 0.85620 0.79175 0.79834 0.77795 1.19394 1.19911 1.20778 1.20647 0.92622 0.89939 1.50997 0.93186 1.18937 1.01509 0.94548 0.85617 1.22643 0.81790 0.97738 0.92366 1.86700 1.39137 1.73391 1.26766 1.21733 0.89301 0.74655 0.81396 1.90782 1.27699 1.49109 1.73328 1.17351 0.79094 1.11150 0.94005 1.91498 1.41341 1.88489 1.89847 1.24405 1.05769 0.90211 0.89595 1.22382 0.95877 1.02245 0.92887 1.22738 0.93556 1.04162 0.95511 1.22481 0.96818 1.04422 0.88777 1.23024 0.99272 0.96019 1.03526 1.22433 0.91914 1.01282 1.01433 0.92825 0.93789 0.92357 0.90899 0.85640 0.86588 0.89441 0.84651 0.89107 0.89776 0.89145 0.90152 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.40 12.65 21.45 0.27 -52.13 16 2 C 0.02 1.38 5.43 84.66 0.46 1.84 16 3 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.50 -28.71 8.75 25.60 0.22 -28.49 16 8 H 0.05 2.90 7.82 -2.91 -0.02 2.88 16 9 C -0.01 -0.29 1.70 -52.93 -0.09 -0.38 16 10 C 0.13 6.32 5.39 71.98 0.39 6.71 16 11 O -0.34 -16.45 10.09 -57.16 -0.58 -17.03 16 12 C 0.48 20.04 7.90 70.16 0.55 20.59 16 13 O -0.52 -21.87 14.84 19.77 0.29 -21.58 16 14 C 0.00 0.14 7.43 23.48 0.17 0.32 16 15 F -0.13 -4.76 17.20 44.97 0.77 -3.98 16 16 C -0.10 -2.43 6.88 -17.14 -0.12 -2.55 16 17 C -0.10 -1.88 7.04 30.06 0.21 -1.67 16 18 C -0.12 -1.51 8.17 30.95 0.25 -1.26 16 19 C -0.09 -1.29 7.96 30.16 0.24 -1.05 16 20 C -0.18 -7.97 9.96 30.62 0.30 -7.66 16 21 C -0.13 -6.28 9.15 30.62 0.28 -6.00 16 22 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 23 H 0.04 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.06 2.64 7.93 -2.39 -0.02 2.62 16 25 H 0.07 1.75 7.42 -2.38 -0.02 1.74 16 26 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 32 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.07 3.67 8.14 -2.38 -0.02 3.65 16 Total: -1.00 -66.53 304.31 6.77 -59.76 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.10 Total: 7.97 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 2.88 Total: -19.59 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.27 Total: -52.13 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.28 Total: -38.61 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.77 Total: -3.98 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.53 6.77 -59.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820138817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.732 kcal (2) G-P(sol) polarization free energy of solvation -66.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds