Wall clock time and date at job start Mon Mar 30 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47081 * 2 1 4 4 N 1.46896 * 109.47352 * 180.02562 * 3 2 1 5 5 C 1.46899 * 110.99993 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47298 * 35.00228 * 5 4 3 7 7 C 1.52997 * 109.47207 * 274.99917 * 5 4 3 8 8 C 1.50707 * 109.46882 * 155.00217 * 5 4 3 9 9 S 1.71038 * 125.38474 * 45.02297 * 8 5 4 10 10 C 1.76082 * 90.38968 * 179.73868 * 9 8 5 11 11 C 1.39908 * 125.55085 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00633 * 359.97438 * 11 10 9 13 13 C 1.40249 * 119.99876 * 179.97438 * 11 10 9 14 14 N 1.30703 * 119.99765 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00188 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47030 * 59.99731 * 15 13 11 17 17 H 1.48500 * 109.47088 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47001 * 299.99586 * 15 13 11 19 19 N 1.31867 * 108.89204 * 359.97438 * 10 9 8 20 20 C 1.30453 * 115.68859 * 0.02562 * 19 10 9 21 21 C 1.50702 * 122.10400 * 180.02562 * 20 19 10 22 22 H 1.08997 * 109.46849 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46658 * 299.99892 * 1 2 3 24 24 H 1.08999 * 109.46918 * 59.99565 * 1 2 3 25 25 H 1.09000 * 109.47202 * 240.00642 * 2 1 3 26 26 H 1.08997 * 109.47492 * 119.99955 * 2 1 3 27 27 H 1.09003 * 109.47110 * 59.99735 * 3 2 1 28 28 H 1.09000 * 109.47067 * 300.00798 * 3 2 1 29 29 H 1.00896 * 110.99915 * 56.04679 * 4 3 2 30 30 H 1.09004 * 109.47108 * 59.99982 * 7 5 4 31 31 H 1.09003 * 109.47265 * 180.02562 * 7 5 4 32 32 H 1.09009 * 109.47076 * 300.00273 * 7 5 4 33 33 H 0.97005 * 119.99594 * 179.97438 * 14 13 11 34 34 H 1.09003 * 109.46928 * 269.97925 * 21 20 19 35 35 H 1.08999 * 109.46642 * 29.97195 * 21 20 19 36 36 H 1.08996 * 109.47321 * 149.97625 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0354 2.8141 0.0000 6 1 3.3799 3.4546 0.5901 7 6 4.1002 3.3361 -1.4367 8 6 5.4179 2.8212 0.5998 9 16 6.6603 1.7027 0.2381 10 6 7.7443 2.5277 1.3538 11 6 9.0674 2.1611 1.6231 12 1 9.5024 1.3057 1.1278 13 6 9.8289 2.9046 2.5365 14 7 9.3028 3.9401 3.1357 15 14 11.5952 2.4147 2.8968 16 1 12.3887 2.4660 1.6427 17 1 12.1769 3.3543 3.8888 18 1 11.6243 1.0350 3.4449 19 7 7.1063 3.5479 1.8932 20 6 5.8729 3.7142 1.5021 21 6 5.0110 4.8344 2.0252 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.8703 0.9166 -0.7822 30 1 3.1002 3.3309 -1.8706 31 1 4.4912 4.3536 -1.4363 32 1 4.7557 2.6955 -2.0269 33 1 9.8294 4.4541 3.7677 34 1 4.4790 4.4982 2.9152 35 1 5.6394 5.6883 2.2784 36 1 4.2915 5.1267 1.2604 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040994881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:40 Heat of formation + Delta-G solvation = 9.591505 kcal Electronic energy + Delta-G solvation = -16523.186615 eV Core-core repulsion = 13939.763433 eV Total energy + Delta-G solvation = -2583.423182 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.02940 -36.74603 -34.09667 -33.29366 -30.41117 -29.00965 -27.27120 -25.86988 -24.63927 -21.94977 -21.26538 -20.78709 -18.33097 -16.51029 -16.28305 -15.43533 -15.04093 -14.58376 -14.19179 -13.64276 -13.38799 -13.05761 -12.74309 -12.45670 -12.20846 -11.95274 -11.85580 -11.71179 -11.57853 -11.37657 -11.21649 -11.00603 -10.86817 -10.82320 -10.63655 -10.43190 -10.09232 -9.50535 -9.36794 -7.96642 -7.55151 -7.51985 -7.18074 -6.64847 -4.53872 2.57243 3.01050 3.02738 3.09624 3.39960 3.81763 3.89277 4.37006 4.63959 5.03840 5.14613 5.27079 5.43950 5.56584 5.60471 5.68855 5.82304 5.85780 5.88777 6.00176 6.00587 6.18761 6.26278 6.32003 6.38208 6.52209 6.55521 6.69626 6.72113 6.92228 7.34737 7.50424 7.77037 7.84643 8.04567 8.31815 8.64943 10.01419 10.15416 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.035093 B = 0.005073 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.695629 B = 5517.768899 C = 5814.470272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.059 3.941 4 N -0.679 5.679 5 C 0.192 3.808 6 H 0.072 0.928 7 C -0.172 4.172 8 C -0.368 4.368 9 S -0.076 6.076 10 C 0.232 3.768 11 C -0.390 4.390 12 H 0.092 0.908 13 C 0.071 3.929 14 N -0.707 5.707 15 Si 0.919 3.081 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.261 1.261 19 N -0.532 5.532 20 C 0.122 3.878 21 C -0.071 4.071 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.021 0.979 29 H 0.335 0.665 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.281 0.719 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 -2.412 -4.239 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.070 4.070 4 N -0.309 5.309 5 C 0.081 3.919 6 H 0.090 0.910 7 C -0.231 4.231 8 C -0.493 4.493 9 S 0.181 5.819 10 C -0.020 4.020 11 C -0.433 4.433 12 H 0.110 0.890 13 C -0.158 4.158 14 N -0.329 5.329 15 Si 0.742 3.258 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.186 1.186 19 N -0.251 5.251 20 C -0.020 4.020 21 C -0.131 4.131 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.153 0.847 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.065 -2.864 -3.715 9.330 hybrid contribution -0.024 0.766 -0.442 0.885 sum -8.089 -2.098 -4.158 9.334 Atomic orbital electron populations 1.21727 0.96005 1.01390 1.01579 1.21507 0.95073 0.96977 1.02515 1.21989 0.88956 0.96311 0.99786 1.60661 1.05686 1.14762 1.49791 1.19308 0.91683 0.87802 0.93086 0.91044 1.22502 0.99805 1.02341 0.98501 1.23212 1.00118 1.08366 1.17562 1.82874 1.08485 1.38140 1.52397 1.24019 0.96273 0.90300 0.91384 1.18948 0.93401 1.11181 1.19730 0.88993 1.26076 1.00703 0.94240 0.94831 1.70008 1.36650 1.10553 1.15678 0.86179 0.80644 0.79666 0.79262 1.18625 1.19961 1.18587 1.67554 1.05583 1.21447 1.30555 1.20014 0.92303 0.95833 0.93830 1.20205 0.97322 0.96264 0.99283 0.92823 0.92734 0.93092 0.92425 0.91099 0.91485 0.96109 0.84709 0.94141 0.92251 0.92712 0.90793 0.92589 0.91972 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.47 6.19 -26.73 -0.17 -1.64 16 3 C 0.06 0.82 5.48 -3.82 -0.02 0.80 16 4 N -0.68 -11.67 6.06 -107.95 -0.65 -12.32 16 5 C 0.19 3.59 2.69 -68.86 -0.19 3.41 16 6 H 0.07 1.31 6.33 -51.93 -0.33 0.98 16 7 C -0.17 -2.86 9.14 37.16 0.34 -2.52 16 8 C -0.37 -8.50 5.30 -35.50 -0.19 -8.69 16 9 S -0.08 -1.84 22.94 -107.50 -2.47 -4.31 16 10 C 0.23 6.39 7.07 -16.91 -0.12 6.27 16 11 C -0.39 -10.24 9.40 -38.20 -0.36 -10.60 16 12 H 0.09 2.23 7.85 -52.49 -0.41 1.82 16 13 C 0.07 1.77 5.50 -17.28 -0.10 1.67 16 14 N -0.71 -18.56 11.87 55.56 0.66 -17.90 16 15 Si 0.92 17.91 29.56 -169.99 -5.03 12.89 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 17 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 18 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 19 N -0.53 -14.96 8.73 -9.33 -0.08 -15.04 16 20 C 0.12 3.03 6.69 -84.37 -0.56 2.47 16 21 C -0.07 -1.46 9.76 36.01 0.35 -1.11 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 28 H 0.02 0.27 7.44 -51.93 -0.39 -0.11 16 29 H 0.33 5.64 8.47 -39.29 -0.33 5.30 16 30 H 0.04 0.57 7.45 -51.93 -0.39 0.19 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.94 8.13 -51.92 -0.42 0.52 16 33 H 0.28 6.62 8.29 -40.82 -0.34 6.28 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.05 0.91 6.94 -51.93 -0.36 0.55 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -28.84 311.73 -9.07 -37.91 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.56 Total: 5.10 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -0.64 Total: -11.02 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.08 Total: -45.26 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.47 Total: -4.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.84 -9.07 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040994881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.501 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds