Wall clock time and date at job start Mon Mar 30 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47081 * 2 1 4 4 N 1.46896 * 109.47352 * 180.02562 * 3 2 1 5 5 C 1.46899 * 110.99993 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47298 * 35.00228 * 5 4 3 7 7 C 1.52997 * 109.47207 * 274.99917 * 5 4 3 8 8 C 1.50707 * 109.46882 * 155.00217 * 5 4 3 9 9 S 1.71038 * 125.38474 * 45.02297 * 8 5 4 10 10 C 1.76082 * 90.38968 * 179.73868 * 9 8 5 11 11 C 1.39908 * 125.55085 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00633 * 359.97438 * 11 10 9 13 13 C 1.40249 * 119.99876 * 179.97438 * 11 10 9 14 14 N 1.30703 * 119.99765 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00188 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47030 * 59.99731 * 15 13 11 17 17 H 1.48500 * 109.47088 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47001 * 299.99586 * 15 13 11 19 19 N 1.31867 * 108.89204 * 359.97438 * 10 9 8 20 20 C 1.30453 * 115.68859 * 0.02562 * 19 10 9 21 21 C 1.50702 * 122.10400 * 180.02562 * 20 19 10 22 22 H 1.08997 * 109.46849 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46658 * 299.99892 * 1 2 3 24 24 H 1.08999 * 109.46918 * 59.99565 * 1 2 3 25 25 H 1.09000 * 109.47202 * 240.00642 * 2 1 3 26 26 H 1.08997 * 109.47492 * 119.99955 * 2 1 3 27 27 H 1.09003 * 109.47110 * 59.99735 * 3 2 1 28 28 H 1.09000 * 109.47067 * 300.00798 * 3 2 1 29 29 H 1.00896 * 110.99915 * 56.04679 * 4 3 2 30 30 H 1.09004 * 109.47108 * 59.99982 * 7 5 4 31 31 H 1.09003 * 109.47265 * 180.02562 * 7 5 4 32 32 H 1.09009 * 109.47076 * 300.00273 * 7 5 4 33 33 H 0.97005 * 119.99594 * 179.97438 * 14 13 11 34 34 H 1.09003 * 109.46928 * 269.97925 * 21 20 19 35 35 H 1.08999 * 109.46642 * 29.97195 * 21 20 19 36 36 H 1.08996 * 109.47321 * 149.97625 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0354 2.8141 0.0000 6 1 3.3799 3.4546 0.5901 7 6 4.1002 3.3361 -1.4367 8 6 5.4179 2.8212 0.5998 9 16 6.6603 1.7027 0.2381 10 6 7.7443 2.5277 1.3538 11 6 9.0674 2.1611 1.6231 12 1 9.5024 1.3057 1.1278 13 6 9.8289 2.9046 2.5365 14 7 9.3028 3.9401 3.1357 15 14 11.5952 2.4147 2.8968 16 1 12.3887 2.4660 1.6427 17 1 12.1769 3.3543 3.8888 18 1 11.6243 1.0350 3.4449 19 7 7.1063 3.5479 1.8932 20 6 5.8729 3.7142 1.5021 21 6 5.0110 4.8344 2.0252 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.8703 0.9166 -0.7822 30 1 3.1002 3.3309 -1.8706 31 1 4.4912 4.3536 -1.4363 32 1 4.7557 2.6955 -2.0269 33 1 9.8294 4.4541 3.7677 34 1 4.4790 4.4982 2.9152 35 1 5.6394 5.6883 2.2784 36 1 4.2915 5.1267 1.2604 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040994881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:40 Heat of formation + Delta-G solvation = -8.369052 kcal Electronic energy + Delta-G solvation = -16523.965443 eV Core-core repulsion = 13939.763433 eV Total energy + Delta-G solvation = -2584.202010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81971 -38.16839 -35.77146 -34.62826 -32.09427 -30.35887 -29.11969 -27.51020 -25.79003 -23.83027 -22.40922 -22.22570 -20.18737 -18.24083 -18.11099 -16.79400 -16.60028 -15.91700 -15.67585 -15.07930 -14.94862 -14.39164 -14.14385 -14.03617 -13.65646 -13.37321 -13.28938 -13.24528 -12.93356 -12.87473 -12.65017 -12.54440 -12.38730 -12.07236 -11.93738 -11.69691 -11.57338 -11.34992 -11.14689 -9.56594 -9.46528 -9.24568 -9.07163 -8.49980 -6.48876 0.70734 1.36753 1.47739 1.54759 1.60431 1.93433 2.22210 2.54837 3.27467 3.40851 4.03816 4.15915 4.18498 4.25050 4.38209 4.44661 4.52371 4.64541 4.69022 4.80099 4.86808 4.89291 4.94086 4.97815 5.08697 5.15252 5.18563 5.23441 5.32974 5.42561 5.50396 5.84086 6.12429 6.26011 6.42930 6.52348 6.71503 8.11936 8.32178 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.035093 B = 0.005073 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.695629 B = 5517.768899 C = 5814.470272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.061 3.939 4 N -0.694 5.694 5 C 0.193 3.807 6 H 0.079 0.921 7 C -0.162 4.162 8 C -0.355 4.355 9 S -0.064 6.064 10 C 0.192 3.808 11 C -0.422 4.422 12 H 0.101 0.899 13 C 0.028 3.972 14 N -0.751 5.751 15 Si 1.002 2.998 16 H -0.253 1.253 17 H -0.266 1.266 18 H -0.255 1.255 19 N -0.567 5.567 20 C 0.080 3.920 21 C -0.062 4.062 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.336 0.664 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.288 0.712 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.331 -2.899 -4.977 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.067 4.067 4 N -0.325 5.325 5 C 0.081 3.919 6 H 0.097 0.903 7 C -0.222 4.222 8 C -0.479 4.479 9 S 0.193 5.807 10 C -0.061 4.061 11 C -0.465 4.465 12 H 0.119 0.881 13 C -0.198 4.198 14 N -0.374 5.374 15 Si 0.820 3.180 16 H -0.177 1.177 17 H -0.190 1.190 18 H -0.178 1.178 19 N -0.288 5.288 20 C -0.060 4.060 21 C -0.121 4.121 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.154 0.846 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.004 -3.348 -4.468 10.595 hybrid contribution 0.112 0.882 -0.274 0.930 sum -8.893 -2.466 -4.743 10.376 Atomic orbital electron populations 1.21689 0.94063 1.02331 1.02129 1.21471 0.96686 0.95573 1.01975 1.22046 0.86693 0.97702 1.00301 1.60552 1.07960 1.13788 1.50210 1.19344 0.89263 0.89089 0.94165 0.90279 1.22377 1.01415 1.01509 0.96869 1.23873 1.01670 1.06544 1.15861 1.82668 1.08397 1.38117 1.51493 1.24512 0.97512 0.91265 0.92780 1.19400 0.93799 1.12225 1.21049 0.88080 1.27128 1.05317 0.93596 0.93745 1.70102 1.38868 1.11894 1.16530 0.84972 0.74191 0.79485 0.79380 1.17738 1.18986 1.17848 1.67546 1.07127 1.22317 1.31827 1.20663 0.92288 0.97875 0.95125 1.20198 0.97039 0.94551 1.00305 0.91755 0.92599 0.92117 0.92028 0.92629 0.91830 0.94512 0.84575 0.91105 0.92831 0.93582 0.90117 0.91876 0.92840 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 71.98 0.71 -1.72 16 2 C -0.12 -2.61 6.19 30.60 0.19 -2.42 16 3 C 0.06 1.55 5.48 86.31 0.47 2.03 16 4 N -0.69 -22.69 6.06 -495.44 -3.00 -25.70 16 5 C 0.19 6.88 2.69 44.17 0.12 7.00 16 6 H 0.08 2.71 6.33 -2.39 -0.02 2.70 16 7 C -0.16 -5.02 9.14 71.98 0.66 -4.36 16 8 C -0.36 -16.31 5.30 24.91 0.13 -16.18 16 9 S -0.06 -3.14 22.94 -56.49 -1.30 -4.43 16 10 C 0.19 10.88 7.07 85.09 0.60 11.48 16 11 C -0.42 -22.73 9.40 23.16 0.22 -22.51 16 12 H 0.10 5.00 7.85 -2.91 -0.02 4.98 16 13 C 0.03 1.39 5.50 85.35 0.47 1.86 16 14 N -0.75 -40.50 11.87 21.88 0.26 -40.24 16 15 Si 1.00 36.74 29.56 68.60 2.03 38.77 16 16 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 17 H -0.27 -9.23 7.11 99.48 0.71 -8.53 16 18 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 19 N -0.57 -32.87 8.73 -183.44 -1.60 -34.48 16 20 C 0.08 4.02 6.69 41.99 0.28 4.30 16 21 C -0.06 -2.51 9.76 71.24 0.70 -1.82 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.66 8.06 -2.39 -0.02 1.64 16 28 H 0.04 0.83 7.44 -2.39 -0.02 0.81 16 29 H 0.34 10.76 8.47 -89.70 -0.76 10.00 16 30 H 0.07 1.76 7.45 -2.38 -0.02 1.75 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.49 8.13 -2.38 -0.02 1.47 16 33 H 0.29 13.89 8.29 -92.70 -0.77 13.12 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 2.71 6.94 -2.39 -0.02 2.69 16 Total: -1.00 -63.75 311.73 1.24 -62.51 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.31 Total: 25.90 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 4.55 Total: -22.34 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -4.35 Total: -100.41 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -1.30 Total: -4.43 kcal Total: -63.75 1.24 -62.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040994881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.140 kcal (2) G-P(sol) polarization free energy of solvation -63.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds