Wall clock time and date at job start Mon Mar 30 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47039 * 2 1 4 4 H 1.08997 * 109.46918 * 177.78466 * 3 2 1 5 5 C 1.50694 * 109.47102 * 297.78379 * 3 2 1 6 6 H 1.08001 * 120.00104 * 120.00174 * 5 3 2 7 7 C 1.37873 * 120.00352 * 300.00165 * 5 3 2 8 8 N 1.31516 * 119.99763 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00552 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46899 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47206 * 119.99515 * 9 7 5 12 12 H 1.48498 * 109.47413 * 240.00253 * 9 7 5 13 13 N 1.46894 * 109.47251 * 57.78613 * 3 2 1 14 14 C 1.46899 * 111.00225 * 183.96202 * 13 3 2 15 15 C 1.46898 * 111.00047 * 60.00462 * 13 3 2 16 16 C 1.50705 * 109.47300 * 195.56996 * 15 13 3 17 17 C 1.33635 * 122.75184 * 94.73597 * 16 15 13 18 18 S 1.76196 * 107.92726 * 179.97438 * 17 16 15 19 19 C 1.70982 * 90.27970 * 0.27446 * 18 17 16 20 20 C 1.50700 * 124.91350 * 179.83900 * 19 18 17 21 21 N 1.29020 * 110.16932 * 359.83909 * 19 18 17 22 22 H 1.08995 * 109.46787 * 296.43191 * 1 2 3 23 23 H 1.09002 * 109.47027 * 176.43792 * 1 2 3 24 24 H 1.08998 * 109.47007 * 56.43893 * 1 2 3 25 25 H 1.09000 * 109.47308 * 120.00164 * 2 1 3 26 26 H 1.09001 * 109.47134 * 239.99765 * 2 1 3 27 27 H 0.97011 * 120.00174 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.46784 * 60.00196 * 14 13 3 29 29 H 1.09006 * 109.47296 * 179.97438 * 14 13 3 30 30 H 1.09001 * 109.47292 * 299.99948 * 14 13 3 31 31 H 1.08996 * 109.47430 * 315.56846 * 15 13 3 32 32 H 1.09001 * 109.47197 * 75.57287 * 15 13 3 33 33 H 1.08004 * 126.03311 * 0.03601 * 17 16 15 34 34 H 1.08998 * 109.47467 * 269.99705 * 20 19 18 35 35 H 1.09004 * 109.47168 * 30.00175 * 20 19 18 36 36 H 1.09003 * 109.47248 * 149.99889 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 0.0397 5 6 1.5831 2.1368 -1.2570 6 1 0.9592 3.0160 -1.1919 7 6 1.9614 1.6498 -2.4901 8 7 2.7216 0.5795 -2.5693 9 14 1.3944 2.5100 -4.0483 10 1 0.5556 3.6818 -3.6895 11 1 2.5779 2.9670 -4.8201 12 1 0.5994 1.5657 -4.8738 13 7 1.5072 2.1502 1.1717 14 6 1.8998 3.5657 1.1553 15 6 1.9333 1.5001 2.4182 16 6 1.0836 1.9964 3.5596 17 6 -0.0071 1.3508 3.9829 18 16 -0.6931 2.2658 5.3234 19 6 0.5506 3.4299 5.1760 20 6 0.6905 4.6566 6.0401 21 7 1.3518 3.1061 4.2180 22 1 -0.3633 0.4574 0.9202 23 1 -0.3633 -1.0257 -0.0639 24 1 -0.3633 0.5681 -0.8563 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 2.9881 0.2370 -3.4369 28 1 1.5113 4.0400 0.2541 29 1 1.4918 4.0662 2.0335 30 1 2.9871 3.6413 1.1660 31 1 1.8185 0.4204 2.3226 32 1 2.9789 1.7385 2.6133 33 1 -0.3985 0.4301 3.5759 34 1 0.1472 5.4851 5.5857 35 1 0.2811 4.4527 7.0296 36 1 1.7446 4.9193 6.1302 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044609171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:27 Heat of formation + Delta-G solvation = 30.398171 kcal Electronic energy + Delta-G solvation = -17111.441184 eV Core-core repulsion = 14528.920247 eV Total energy + Delta-G solvation = -2582.520937 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95237 -38.74356 -35.04790 -33.29144 -32.75607 -29.84215 -28.61422 -27.77186 -26.21050 -24.25049 -23.08187 -20.95113 -20.47143 -18.58247 -18.00303 -17.21087 -16.25777 -16.18896 -15.89648 -15.37444 -15.16754 -14.58652 -14.32318 -13.94852 -13.84254 -13.63919 -13.33727 -12.97494 -12.93526 -12.81198 -12.68355 -12.50226 -12.30535 -12.09683 -11.86706 -11.57753 -11.27699 -10.77900 -10.51734 -10.46850 -10.25902 -9.58166 -8.94341 -8.08106 -6.17848 -0.14412 0.52176 0.81695 1.40539 1.43071 1.53849 1.83155 2.44049 3.18520 3.20570 3.57391 4.09122 4.15094 4.43476 4.52503 4.53183 4.59961 4.69492 4.71675 4.76063 4.80612 4.89628 4.96587 5.06156 5.13483 5.28597 5.32679 5.43146 5.50219 5.73526 5.77874 5.88652 6.29412 6.38031 6.70480 6.90613 6.94755 7.49557 8.97646 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.035504 B = 0.005436 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.446436 B = 5149.961881 C = 5455.778751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C 0.221 3.779 4 H -0.043 1.043 5 C -0.504 4.504 6 H 0.055 0.945 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.526 5.526 14 C 0.051 3.949 15 C 0.124 3.876 16 C 0.068 3.932 17 C -0.252 4.252 18 S 0.154 5.846 19 C 0.035 3.965 20 C -0.075 4.075 21 N -0.503 5.503 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.260 0.740 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.000 1.000 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.186 0.814 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 3.386 16.605 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.146 4.146 3 C 0.115 3.885 4 H -0.026 1.026 5 C -0.543 4.543 6 H 0.073 0.927 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.250 5.250 14 C -0.097 4.097 15 C -0.007 4.007 16 C -0.063 4.063 17 C -0.391 4.391 18 S 0.408 5.592 19 C -0.243 4.243 20 C -0.135 4.135 21 N -0.219 5.219 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.018 0.982 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.203 0.797 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.668 3.482 17.001 18.972 hybrid contribution 1.627 -0.063 -1.978 2.562 sum -6.041 3.419 15.023 16.549 Atomic orbital electron populations 1.21319 0.95541 0.98676 1.00979 1.21470 0.96586 0.96995 0.99553 1.19118 0.90102 0.92060 0.87256 1.02565 1.21276 1.30597 1.11693 0.90690 0.92719 1.25590 0.95332 0.95701 1.01670 1.70014 1.37197 1.23667 1.24949 0.85580 0.77955 0.78704 0.79848 1.19444 1.20961 1.20527 1.62053 1.59558 1.02280 1.01155 1.22085 0.96426 0.90080 1.01131 1.20592 0.94056 0.99183 0.86841 1.20057 0.96691 0.91540 0.97964 1.26978 1.00806 1.07905 1.03459 1.83448 1.29266 1.16393 1.30064 1.27673 0.95025 1.03118 0.98513 1.20595 1.04901 0.90540 0.97463 1.66100 1.31057 1.16654 1.08111 0.92937 0.94210 0.94685 0.94977 0.91678 0.93055 0.92431 0.91714 0.98177 0.88853 0.95770 0.79703 0.88597 0.87575 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 9.52 71.98 0.69 -3.91 16 2 C -0.11 -5.13 5.13 30.60 0.16 -4.97 16 3 C 0.22 11.36 1.76 44.17 0.08 11.44 16 4 H -0.04 -2.52 8.14 -2.39 -0.02 -2.54 16 5 C -0.50 -27.72 6.71 25.60 0.17 -27.55 16 6 H 0.05 3.05 6.39 -2.91 -0.02 3.03 16 7 C 0.02 0.86 5.30 84.65 0.45 1.31 16 8 N -0.92 -52.78 11.31 21.45 0.24 -52.54 16 9 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 N -0.53 -23.45 3.78 -906.07 -3.42 -26.87 16 14 C 0.05 2.25 9.07 127.69 1.16 3.40 16 15 C 0.12 4.82 5.27 85.56 0.45 5.28 16 16 C 0.07 2.32 5.74 41.52 0.24 2.56 16 17 C -0.25 -7.10 11.11 66.77 0.74 -6.36 16 18 S 0.15 3.31 23.18 -56.49 -1.31 2.00 16 19 C 0.03 0.85 7.39 88.52 0.65 1.51 16 20 C -0.07 -1.17 10.46 71.24 0.75 -0.42 16 21 N -0.50 -16.41 9.35 -179.40 -1.68 -18.08 16 22 H 0.05 2.08 7.66 -2.39 -0.02 2.06 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.03 1.64 7.17 -2.39 -0.02 1.62 16 25 H 0.03 1.38 6.21 -2.39 -0.01 1.36 16 26 H 0.06 3.50 6.02 -2.39 -0.01 3.49 16 27 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 28 H 0.06 2.63 6.23 -2.39 -0.01 2.61 16 29 H 0.06 2.62 6.47 -2.38 -0.02 2.61 16 30 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.09 3.49 5.64 -2.39 -0.01 3.48 16 32 H 0.02 0.99 8.06 -2.39 -0.02 0.98 16 33 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -63.37 301.02 2.45 -60.92 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.06 Total: 6.19 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 5.53 Total: -17.72 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -4.86 Total: -97.50 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.31 Total: 2.00 kcal Total: -63.37 2.45 -60.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044609171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.322 kcal (2) G-P(sol) polarization free energy of solvation -63.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds