Wall clock time and date at job start Mon Mar 30 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47242 * 2 1 4 4 H 1.09004 * 109.47231 * 304.56192 * 3 2 1 5 5 C 1.50700 * 109.47161 * 184.56329 * 3 2 1 6 6 H 1.07999 * 120.00146 * 244.90712 * 5 3 2 7 7 C 1.37876 * 119.99836 * 64.89992 * 5 3 2 8 8 N 1.31518 * 120.00487 * 9.48787 * 7 5 3 9 9 Si 1.86800 * 120.00009 * 189.48245 * 7 5 3 10 10 H 1.48499 * 109.47287 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.47287 * 300.00255 * 9 7 5 12 12 H 1.48500 * 109.47180 * 60.00215 * 9 7 5 13 13 N 1.46901 * 109.47050 * 64.56276 * 3 2 1 14 14 C 1.46901 * 110.99663 * 205.99537 * 13 3 2 15 15 H 1.08998 * 109.47365 * 326.32327 * 14 13 3 16 16 C 1.53000 * 109.47047 * 86.32819 * 14 13 3 17 17 C 1.50707 * 109.46690 * 206.32238 * 14 13 3 18 18 S 1.76192 * 126.04014 * 315.02716 * 17 14 13 19 19 C 1.70976 * 90.28181 * 179.97438 * 18 17 14 20 20 N 1.29025 * 110.16832 * 0.02562 * 19 18 17 21 21 C 1.31780 * 117.12599 * 359.71438 * 20 19 18 22 22 C 1.50698 * 122.75252 * 180.33512 * 21 20 19 23 23 H 1.09002 * 109.46746 * 304.64615 * 1 2 3 24 24 H 1.09007 * 109.47014 * 64.63883 * 1 2 3 25 25 H 1.08992 * 109.47461 * 184.64229 * 1 2 3 26 26 H 1.08999 * 109.47050 * 240.00409 * 2 1 3 27 27 H 1.08990 * 109.47102 * 120.00338 * 2 1 3 28 28 H 0.97002 * 119.99321 * 356.78899 * 8 7 5 29 29 H 1.00899 * 110.99680 * 82.04310 * 13 3 2 30 30 H 1.09002 * 109.47275 * 184.70397 * 16 14 13 31 31 H 1.09003 * 109.46875 * 304.70345 * 16 14 13 32 32 H 1.09003 * 109.47323 * 64.70286 * 16 14 13 33 33 H 1.08001 * 124.91170 * 180.02562 * 19 18 17 34 34 H 1.08995 * 109.47040 * 270.19875 * 22 21 20 35 35 H 1.08996 * 109.47289 * 30.20183 * 22 21 20 36 36 H 1.08999 * 109.46836 * 150.20068 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6115 1.9794 -0.8463 5 6 3.5428 1.4440 -0.1130 6 1 4.1452 1.8185 0.7013 7 6 4.1486 0.9670 -1.2561 8 7 3.4233 0.6859 -2.3165 9 14 5.9997 0.7201 -1.2986 10 1 6.3996 0.2028 -2.6319 11 1 6.6781 2.0171 -1.0476 12 1 6.3933 -0.2553 -0.2503 13 7 1.6424 2.1024 1.2507 14 6 1.5420 3.5568 1.0696 15 1 2.2909 3.8858 0.3493 16 6 0.1464 3.9111 0.5523 17 6 1.7780 4.2448 2.3896 18 16 1.0832 3.7790 3.9402 19 6 1.9023 5.0704 4.7048 20 7 2.5955 5.7314 3.8403 21 6 2.5557 5.3127 2.5915 22 6 3.3216 5.9851 1.4814 23 1 -0.3633 0.5843 0.8455 24 1 -0.3633 0.4402 -0.9287 25 1 -0.3634 -1.0242 0.0832 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.4576 0.7697 -2.2796 29 1 2.2803 1.8743 1.9985 30 1 0.0983 4.9789 0.3387 31 1 -0.0569 3.3487 -0.3590 32 1 -0.5966 3.6581 1.3087 33 1 1.8473 5.2996 5.7588 34 1 2.7049 6.7652 1.0352 35 1 4.2322 6.4280 1.8846 36 1 3.5816 5.2484 0.7213 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:53 Heat of formation + Delta-G solvation = 24.553612 kcal Electronic energy + Delta-G solvation = -17189.972493 eV Core-core repulsion = 14607.198117 eV Total energy + Delta-G solvation = -2582.774376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.71948 -36.98772 -34.02947 -31.71926 -30.98074 -29.06349 -27.04438 -25.52259 -24.60451 -23.04581 -21.29008 -19.85926 -18.58197 -17.68944 -17.11659 -15.60742 -15.00422 -14.69819 -13.84236 -13.75316 -13.36270 -13.31432 -13.00510 -12.43324 -12.34829 -12.20720 -12.10685 -12.04552 -11.33492 -11.26280 -11.05917 -10.79098 -10.74874 -10.43463 -10.16277 -9.92817 -9.79002 -9.40010 -9.01464 -8.96724 -8.47817 -8.33366 -7.41361 -6.39223 -4.16517 0.93690 1.60359 2.02553 2.98241 3.38361 3.40631 3.58541 4.39716 4.46827 4.96054 5.16161 5.29051 5.29492 5.53094 5.76725 5.80968 5.86709 5.98986 6.04995 6.13864 6.20995 6.24354 6.40110 6.44717 6.48459 6.63489 6.79465 6.89562 7.12139 7.26578 7.48877 7.85629 7.90795 7.98313 8.35545 8.51227 8.77085 9.56397 10.94068 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.007453 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.226305 B = 3755.946307 C = 4493.978043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C 0.203 3.797 4 H 0.028 0.972 5 C -0.629 4.629 6 H 0.047 0.953 7 C 0.029 3.971 8 N -0.904 5.904 9 Si 1.060 2.940 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.676 5.676 14 C 0.160 3.840 15 H 0.073 0.927 16 C -0.131 4.131 17 C -0.196 4.196 18 S 0.141 5.859 19 C -0.008 4.008 20 N -0.468 5.468 21 C 0.049 3.951 22 C -0.079 4.079 23 H 0.056 0.944 24 H 0.036 0.964 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.273 0.727 29 H 0.332 0.668 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 6.495 9.452 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C 0.095 3.905 4 H 0.046 0.954 5 C -0.668 4.668 6 H 0.065 0.935 7 C -0.177 4.177 8 N -0.540 5.540 9 Si 0.889 3.111 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.306 5.306 14 C 0.048 3.952 15 H 0.091 0.909 16 C -0.189 4.189 17 C -0.318 4.318 18 S 0.394 5.606 19 C -0.306 4.306 20 N -0.182 5.182 21 C -0.083 4.083 22 C -0.138 4.138 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.210 0.790 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.887 5.614 8.936 11.630 hybrid contribution 0.241 1.081 0.527 1.227 sum -4.646 6.695 9.463 12.488 Atomic orbital electron populations 1.21734 0.98201 0.99092 1.00827 1.21544 0.92961 0.99303 1.00819 1.19286 0.93815 0.90623 0.86801 0.95439 1.22572 0.92117 1.47045 1.05072 0.93475 1.25669 1.06613 0.93491 0.91945 1.70814 1.08329 1.45911 1.28916 0.83666 0.74788 0.76581 0.76101 1.20736 1.21586 1.21434 1.61045 1.55075 1.04616 1.09889 1.19900 0.97569 0.89211 0.88550 0.90916 1.21793 0.95818 0.99856 1.01440 1.26123 1.03919 1.01778 0.99976 1.84024 1.45922 1.30501 1.00157 1.28206 1.00726 0.97746 1.03911 1.66159 1.20632 1.30183 1.01273 1.20215 1.00045 0.95875 0.92180 1.20377 0.98865 1.00242 0.94324 0.92446 0.94440 0.95179 0.91989 0.93897 0.91603 0.85138 0.93308 0.91786 0.92740 0.79027 0.91088 0.91036 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.85 37.16 0.37 -2.33 16 2 C -0.11 -2.42 5.30 -26.73 -0.14 -2.56 16 3 C 0.20 4.74 1.40 -68.86 -0.10 4.64 16 4 H 0.03 0.70 6.58 -51.93 -0.34 0.36 16 5 C -0.63 -16.58 8.27 -34.44 -0.28 -16.86 16 6 H 0.05 1.27 7.71 -52.49 -0.40 0.86 16 7 C 0.03 0.79 5.16 -17.82 -0.09 0.70 16 8 N -0.90 -25.97 13.02 55.43 0.72 -25.25 16 9 Si 1.06 24.58 29.91 -169.99 -5.08 19.49 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -13.47 5.32 -102.16 -0.54 -14.02 16 14 C 0.16 2.90 2.72 -68.86 -0.19 2.71 16 15 H 0.07 1.48 5.92 -51.93 -0.31 1.18 16 16 C -0.13 -2.12 9.41 37.16 0.35 -1.77 16 17 C -0.20 -3.25 5.12 -35.91 -0.18 -3.43 16 18 S 0.14 1.94 23.07 -107.50 -2.48 -0.54 16 19 C -0.01 -0.11 12.23 51.58 0.63 0.52 16 20 N -0.47 -7.48 10.53 -11.90 -0.13 -7.60 16 21 C 0.05 0.80 6.74 -84.22 -0.57 0.23 16 22 C -0.08 -1.17 10.02 36.00 0.36 -0.81 16 23 H 0.06 1.06 7.61 -51.93 -0.40 0.67 16 24 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.54 6.33 -51.93 -0.33 1.21 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.27 7.76 6.04 -40.82 -0.25 7.52 16 29 H 0.33 6.86 7.93 -39.29 -0.31 6.55 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.10 7.50 -51.93 -0.39 0.71 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.19 1.80 8.06 -52.49 -0.42 1.37 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.30 6.61 -51.93 -0.34 0.96 16 LS Contribution 306.66 15.07 4.62 4.62 Total: -1.00 -28.51 306.66 -7.98 -36.49 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.25 Total: 5.75 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 0.15 Total: -18.95 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.05 Total: -46.86 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.49 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.48 Total: -0.54 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.51 -7.98 -36.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.041 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds