Wall clock time and date at job start Mon Mar 30 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47242 * 2 1 4 4 H 1.09004 * 109.47231 * 304.56192 * 3 2 1 5 5 C 1.50700 * 109.47161 * 184.56329 * 3 2 1 6 6 H 1.07999 * 120.00146 * 244.90712 * 5 3 2 7 7 C 1.37876 * 119.99836 * 64.89992 * 5 3 2 8 8 N 1.31518 * 120.00487 * 9.48787 * 7 5 3 9 9 Si 1.86800 * 120.00009 * 189.48245 * 7 5 3 10 10 H 1.48499 * 109.47287 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.47287 * 300.00255 * 9 7 5 12 12 H 1.48500 * 109.47180 * 60.00215 * 9 7 5 13 13 N 1.46901 * 109.47050 * 64.56276 * 3 2 1 14 14 C 1.46901 * 110.99663 * 205.99537 * 13 3 2 15 15 H 1.08998 * 109.47365 * 326.32327 * 14 13 3 16 16 C 1.53000 * 109.47047 * 86.32819 * 14 13 3 17 17 C 1.50707 * 109.46690 * 206.32238 * 14 13 3 18 18 S 1.76192 * 126.04014 * 315.02716 * 17 14 13 19 19 C 1.70976 * 90.28181 * 179.97438 * 18 17 14 20 20 N 1.29025 * 110.16832 * 0.02562 * 19 18 17 21 21 C 1.31780 * 117.12599 * 359.71438 * 20 19 18 22 22 C 1.50698 * 122.75252 * 180.33512 * 21 20 19 23 23 H 1.09002 * 109.46746 * 304.64615 * 1 2 3 24 24 H 1.09007 * 109.47014 * 64.63883 * 1 2 3 25 25 H 1.08992 * 109.47461 * 184.64229 * 1 2 3 26 26 H 1.08999 * 109.47050 * 240.00409 * 2 1 3 27 27 H 1.08990 * 109.47102 * 120.00338 * 2 1 3 28 28 H 0.97002 * 119.99321 * 356.78899 * 8 7 5 29 29 H 1.00899 * 110.99680 * 82.04310 * 13 3 2 30 30 H 1.09002 * 109.47275 * 184.70397 * 16 14 13 31 31 H 1.09003 * 109.46875 * 304.70345 * 16 14 13 32 32 H 1.09003 * 109.47323 * 64.70286 * 16 14 13 33 33 H 1.08001 * 124.91170 * 180.02562 * 19 18 17 34 34 H 1.08995 * 109.47040 * 270.19875 * 22 21 20 35 35 H 1.08996 * 109.47289 * 30.20183 * 22 21 20 36 36 H 1.08999 * 109.46836 * 150.20068 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6115 1.9794 -0.8463 5 6 3.5428 1.4440 -0.1130 6 1 4.1452 1.8185 0.7013 7 6 4.1486 0.9670 -1.2561 8 7 3.4233 0.6859 -2.3165 9 14 5.9997 0.7201 -1.2986 10 1 6.3996 0.2028 -2.6319 11 1 6.6781 2.0171 -1.0476 12 1 6.3933 -0.2553 -0.2503 13 7 1.6424 2.1024 1.2507 14 6 1.5420 3.5568 1.0696 15 1 2.2909 3.8858 0.3493 16 6 0.1464 3.9111 0.5523 17 6 1.7780 4.2448 2.3896 18 16 1.0832 3.7790 3.9402 19 6 1.9023 5.0704 4.7048 20 7 2.5955 5.7314 3.8403 21 6 2.5557 5.3127 2.5915 22 6 3.3216 5.9851 1.4814 23 1 -0.3633 0.5843 0.8455 24 1 -0.3633 0.4402 -0.9287 25 1 -0.3634 -1.0242 0.0832 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.4576 0.7697 -2.2796 29 1 2.2803 1.8743 1.9985 30 1 0.0983 4.9789 0.3387 31 1 -0.0569 3.3487 -0.3590 32 1 -0.5966 3.6581 1.3087 33 1 1.8473 5.2996 5.7588 34 1 2.7049 6.7652 1.0352 35 1 4.2322 6.4280 1.8846 36 1 3.5816 5.2484 0.7213 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:52 Heat of formation + Delta-G solvation = 7.032297 kcal Electronic energy + Delta-G solvation = -17190.732274 eV Core-core repulsion = 14607.198117 eV Total energy + Delta-G solvation = -2583.534157 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.91865 -38.66214 -35.70329 -33.54499 -32.35341 -30.59565 -28.29042 -27.38914 -25.76428 -24.89520 -22.71730 -21.64519 -19.88301 -19.07514 -18.88953 -16.89019 -16.61950 -15.96522 -15.70062 -15.39479 -14.98236 -14.56241 -14.43424 -14.04910 -13.81286 -13.61545 -13.53923 -13.37241 -12.96898 -12.75777 -12.57985 -12.40571 -12.20923 -12.13180 -11.98996 -11.65878 -11.57710 -10.90624 -10.57155 -10.41812 -10.17369 -9.64239 -9.20473 -8.51858 -6.33142 -0.21334 0.47024 0.88049 1.49883 1.55325 1.74718 1.79851 2.53671 3.17759 3.30252 3.46804 3.79852 4.25161 4.28843 4.38481 4.42533 4.47789 4.56618 4.66264 4.71288 4.76358 4.84141 4.91571 4.99697 5.01295 5.21051 5.23898 5.32079 5.40398 5.47244 5.67283 5.94574 5.98559 6.45992 6.57437 6.69653 6.77604 7.46852 8.77476 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.007453 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.226305 B = 3755.946307 C = 4493.978043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C 0.211 3.789 4 H 0.003 0.997 5 C -0.633 4.633 6 H 0.037 0.963 7 C -0.017 4.017 8 N -0.928 5.928 9 Si 1.101 2.899 10 H -0.284 1.284 11 H -0.277 1.277 12 H -0.275 1.275 13 N -0.662 5.662 14 C 0.164 3.836 15 H 0.042 0.958 16 C -0.123 4.123 17 C -0.230 4.230 18 S 0.174 5.826 19 C 0.009 3.991 20 N -0.495 5.495 21 C 0.043 3.957 22 C -0.078 4.078 23 H 0.065 0.935 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.039 0.961 28 H 0.263 0.737 29 H 0.328 0.672 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.517 6.951 11.486 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C 0.102 3.898 4 H 0.021 0.979 5 C -0.672 4.672 6 H 0.056 0.944 7 C -0.218 4.218 8 N -0.565 5.565 9 Si 0.925 3.075 10 H -0.210 1.210 11 H -0.203 1.203 12 H -0.200 1.200 13 N -0.292 5.292 14 C 0.052 3.948 15 H 0.060 0.940 16 C -0.181 4.181 17 C -0.351 4.351 18 S 0.428 5.572 19 C -0.288 4.288 20 N -0.210 5.210 21 C -0.089 4.089 22 C -0.137 4.137 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.250 0.750 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.337 6.075 10.985 13.640 hybrid contribution 0.343 0.992 0.004 1.050 sum -4.994 7.067 10.989 13.987 Atomic orbital electron populations 1.21598 0.95311 1.00614 1.01070 1.21409 0.95501 0.98032 0.99174 1.19067 0.92051 0.91268 0.87435 0.97909 1.22874 0.93860 1.46029 1.04460 0.94428 1.26859 1.09968 0.93150 0.91823 1.70912 1.07933 1.47866 1.29788 0.83122 0.70873 0.77296 0.76253 1.20981 1.20287 1.20009 1.61017 1.54140 1.05954 1.08044 1.19765 0.97768 0.87874 0.89360 0.94010 1.21718 0.94856 1.00653 1.00898 1.25915 1.05946 1.02707 1.00581 1.83867 1.45144 1.30191 0.97999 1.28957 0.98351 0.96223 1.05249 1.66228 1.22214 1.31313 1.01236 1.20425 0.99730 0.95871 0.92876 1.20363 0.99445 1.00067 0.93809 0.91574 0.94656 0.93087 0.94867 0.94169 0.92660 0.85588 0.91725 0.93298 0.91601 0.74985 0.89549 0.90393 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.85 71.98 0.71 -4.07 16 2 C -0.10 -4.64 5.30 30.60 0.16 -4.47 16 3 C 0.21 10.05 1.40 44.17 0.06 10.11 16 4 H 0.00 0.16 6.58 -2.38 -0.02 0.14 16 5 C -0.63 -34.05 8.27 25.60 0.21 -33.84 16 6 H 0.04 2.05 7.71 -2.91 -0.02 2.03 16 7 C -0.02 -0.96 5.16 84.65 0.44 -0.52 16 8 N -0.93 -54.64 13.02 21.45 0.28 -54.37 16 9 Si 1.10 49.80 29.91 68.60 2.05 51.85 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.66 -26.42 5.32 -477.14 -2.54 -28.96 16 14 C 0.16 5.99 2.72 44.17 0.12 6.11 16 15 H 0.04 1.78 5.92 -2.39 -0.01 1.77 16 16 C -0.12 -3.93 9.41 71.98 0.68 -3.25 16 17 C -0.23 -7.38 5.12 24.65 0.13 -7.25 16 18 S 0.17 4.36 23.07 -56.49 -1.30 3.06 16 19 C 0.01 0.22 12.23 130.65 1.60 1.82 16 20 N -0.50 -14.73 10.53 -191.55 -2.02 -16.75 16 21 C 0.04 1.38 6.74 41.52 0.28 1.66 16 22 C -0.08 -2.29 10.02 71.24 0.71 -1.58 16 23 H 0.07 2.33 7.61 -2.39 -0.02 2.31 16 24 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.03 1.68 6.33 -2.39 -0.02 1.66 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.26 15.54 6.04 -92.71 -0.56 14.98 16 29 H 0.33 13.49 7.93 -89.69 -0.71 12.78 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.69 7.50 -2.39 -0.02 1.67 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.23 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 2.08 6.61 -2.39 -0.02 2.06 16 Total: -1.00 -61.63 306.66 2.14 -59.49 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.57 Total: 20.96 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 5.10 Total: -35.29 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -4.27 Total: -100.07 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.30 Total: 3.06 kcal Total: -61.63 2.14 -59.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.521 kcal (2) G-P(sol) polarization free energy of solvation -61.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds