Wall clock time and date at job start Mon Mar 30 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46863 * 2 1 4 4 H 1.08992 * 109.47331 * 54.49942 * 3 2 1 5 5 N 1.46902 * 109.46963 * 294.49527 * 3 2 1 6 6 C 1.46904 * 110.99888 * 151.12510 * 5 3 2 7 7 H 1.09007 * 109.47031 * 328.22334 * 6 5 3 8 8 C 1.52993 * 109.47217 * 88.22190 * 6 5 3 9 9 C 1.50700 * 109.47200 * 208.22688 * 6 5 3 10 10 H 1.07996 * 119.99567 * 354.46575 * 9 6 5 11 11 C 1.37876 * 119.99811 * 174.46435 * 9 6 5 12 12 N 1.31519 * 119.99710 * 164.44031 * 11 9 6 13 13 Si 1.86794 * 120.00484 * 344.44661 * 11 9 6 14 14 H 1.48500 * 109.46774 * 269.99934 * 13 11 9 15 15 H 1.48500 * 109.47016 * 29.99364 * 13 11 9 16 16 H 1.48499 * 109.47652 * 149.99786 * 13 11 9 17 17 C 1.50707 * 109.46859 * 174.49801 * 3 2 1 18 18 N 1.29027 * 124.91782 * 254.99401 * 17 3 2 19 19 C 1.31778 * 117.12778 * 179.97438 * 18 17 3 20 20 C 1.50699 * 122.75430 * 179.97438 * 19 18 17 21 21 C 1.33640 * 114.49783 * 0.02562 * 19 18 17 22 22 S 1.70975 * 124.91399 * 74.69646 * 17 3 2 23 23 H 1.08999 * 109.47110 * 185.12836 * 1 2 3 24 24 H 1.09002 * 109.47738 * 305.13139 * 1 2 3 25 25 H 1.09000 * 109.47345 * 65.13305 * 1 2 3 26 26 H 1.08995 * 109.47292 * 239.99680 * 2 1 3 27 27 H 1.09000 * 109.47151 * 119.99718 * 2 1 3 28 28 H 1.00903 * 111.00317 * 275.07475 * 5 3 2 29 29 H 1.08995 * 109.47468 * 294.04628 * 8 6 5 30 30 H 1.09004 * 109.47106 * 54.04709 * 8 6 5 31 31 H 1.09001 * 109.47080 * 174.04319 * 8 6 5 32 32 H 0.97004 * 119.99816 * 354.91197 * 12 11 9 33 33 H 1.08993 * 109.46935 * 89.99780 * 20 19 18 34 34 H 1.08999 * 109.47248 * 210.00204 * 20 19 18 35 35 H 1.09000 * 109.46379 * 330.00211 * 20 19 18 36 36 H 1.08002 * 126.03942 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5984 1.9840 0.8366 5 7 1.6617 2.0956 -1.2604 6 6 1.4918 3.5427 -1.0732 7 1 1.1291 3.7384 -0.0640 8 6 2.8358 4.2446 -1.2771 9 6 0.4949 4.0652 -2.0753 10 1 0.1011 3.4093 -2.8375 11 6 0.0856 5.3806 -2.0189 12 7 -0.5308 5.9221 -3.0467 13 14 0.4068 6.3938 -0.4828 14 1 -0.7407 6.2563 0.4497 15 1 1.6441 5.9091 0.1801 16 1 0.5723 7.8214 -0.8569 17 6 3.5408 1.4447 0.1362 18 7 4.1843 1.7522 1.2114 19 6 5.5001 1.7019 1.1594 20 6 6.3761 2.0355 2.3393 21 6 5.9940 1.3318 -0.0260 22 16 4.6370 1.0331 -1.1095 23 1 -0.3633 -1.0235 0.0919 24 1 -0.3635 0.5914 0.8404 25 1 -0.3634 0.4321 -0.9324 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.3365 1.9015 -1.9850 29 1 3.5253 3.9456 -0.4877 30 1 3.2489 3.9639 -2.2460 31 1 2.6906 5.3243 -1.2431 32 1 -0.6322 5.4205 -3.8708 33 1 6.5614 1.1325 2.9210 34 1 7.3241 2.4405 1.9851 35 1 5.8763 2.7747 2.9652 36 1 7.0401 1.2297 -0.2746 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067407267.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:32 Heat of formation + Delta-G solvation = 33.362646 kcal Electronic energy + Delta-G solvation = -17129.149524 eV Core-core repulsion = 14546.757137 eV Total energy + Delta-G solvation = -2582.392388 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.83852 -37.18089 -33.91516 -31.79780 -31.68125 -28.89530 -27.60933 -26.01989 -24.58297 -22.97991 -20.74145 -20.33418 -19.23698 -17.74166 -17.28313 -15.66440 -15.03833 -14.92203 -14.12936 -13.81180 -13.72834 -13.31768 -13.21447 -12.70712 -12.60528 -12.35136 -12.05701 -11.79337 -11.62296 -11.36860 -11.24251 -11.18106 -10.71046 -10.53808 -10.42865 -10.10388 -9.61658 -9.49563 -9.25416 -8.91658 -8.57229 -8.26680 -7.70753 -6.39397 -4.00366 0.83497 1.48957 1.89043 2.89693 3.42826 3.45334 3.59161 4.14076 4.52434 4.83988 5.00434 5.14339 5.24311 5.29143 5.39976 5.47772 5.51241 5.65139 5.81655 5.84575 5.98778 6.12820 6.22152 6.28641 6.31151 6.37285 6.50598 6.59666 6.78099 6.81927 7.13054 7.66981 7.91683 8.11259 8.23902 8.47839 9.02997 9.66328 10.98911 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.007483 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.720806 B = 3740.800958 C = 4303.614479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C 0.152 3.848 4 H 0.103 0.897 5 N -0.650 5.650 6 C 0.187 3.813 7 H 0.031 0.969 8 C -0.173 4.173 9 C -0.580 4.580 10 H 0.065 0.935 11 C 0.031 3.969 12 N -0.910 5.910 13 Si 1.038 2.962 14 H -0.285 1.285 15 H -0.274 1.274 16 H -0.287 1.287 17 C 0.050 3.950 18 N -0.476 5.476 19 C 0.067 3.933 20 C -0.077 4.077 21 C -0.277 4.277 22 S 0.115 5.885 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.329 0.671 29 H 0.018 0.982 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.268 0.732 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 -11.007 7.442 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 C 0.037 3.963 4 H 0.120 0.880 5 N -0.280 5.280 6 C 0.079 3.921 7 H 0.048 0.952 8 C -0.233 4.233 9 C -0.618 4.618 10 H 0.083 0.917 11 C -0.174 4.174 12 N -0.544 5.544 13 Si 0.866 3.134 14 H -0.212 1.212 15 H -0.200 1.200 16 H -0.213 1.213 17 C -0.230 4.230 18 N -0.191 5.191 19 C -0.065 4.065 20 C -0.136 4.136 21 C -0.417 4.417 22 S 0.370 5.630 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.148 0.852 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.603 -9.813 7.586 16.318 hybrid contribution 1.985 -0.880 0.032 2.172 sum 12.588 -10.693 7.618 18.189 Atomic orbital electron populations 1.21612 0.94226 1.00285 1.03590 1.21495 0.97498 0.93885 1.01163 1.20766 0.81887 0.97325 0.96304 0.87958 1.61053 1.49545 1.13850 1.03536 1.19718 0.92796 0.81867 0.97763 0.95154 1.22867 0.99515 1.02191 0.98704 1.21938 1.26843 0.97103 1.15939 0.91716 1.25624 0.94134 0.95528 1.02116 1.70800 1.41340 1.39230 1.03028 0.84188 0.76836 0.76235 0.76117 1.21220 1.19991 1.21269 1.28754 1.03326 0.99522 0.91419 1.66175 1.07118 1.18004 1.27832 1.20343 0.89649 1.00677 0.95870 1.20327 0.97062 1.02173 0.94045 1.26725 1.03545 1.14302 0.97085 1.83920 0.97793 1.63049 1.18235 0.93658 0.93005 0.90653 0.92011 0.92369 0.85240 0.96302 0.93735 0.92615 0.92171 0.90876 0.90981 0.90629 0.81058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.74 37.15 0.36 -1.68 16 2 C -0.10 -1.48 5.59 -26.73 -0.15 -1.63 16 3 C 0.15 2.65 2.52 -68.86 -0.17 2.48 16 4 H 0.10 1.93 7.32 -51.93 -0.38 1.55 16 5 N -0.65 -13.08 5.61 -102.17 -0.57 -13.65 16 6 C 0.19 4.42 2.14 -68.87 -0.15 4.27 16 7 H 0.03 0.75 5.95 -51.93 -0.31 0.44 16 8 C -0.17 -3.89 8.21 37.15 0.31 -3.59 16 9 C -0.58 -16.11 9.12 -34.44 -0.31 -16.43 16 10 H 0.06 1.95 8.06 -52.49 -0.42 1.53 16 11 C 0.03 0.88 5.32 -17.82 -0.09 0.79 16 12 N -0.91 -27.92 13.70 55.43 0.76 -27.16 16 13 Si 1.04 25.42 26.18 -169.99 -4.45 20.97 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.29 5.55 56.52 0.31 -5.98 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 C 0.05 0.85 4.68 -13.45 -0.06 0.78 16 18 N -0.48 -8.15 10.53 -8.06 -0.08 -8.23 16 19 C 0.07 0.97 6.74 -84.23 -0.57 0.40 16 20 C -0.08 -0.82 10.31 36.00 0.37 -0.45 16 21 C -0.28 -3.65 11.13 29.12 0.32 -3.32 16 22 S 0.11 1.65 21.94 -107.50 -2.36 -0.71 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.26 7.91 -51.93 -0.41 0.85 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.33 6.36 6.92 -39.29 -0.27 6.09 16 29 H 0.02 0.39 6.89 -51.93 -0.36 0.03 16 30 H 0.04 0.96 8.01 -51.93 -0.42 0.55 16 31 H 0.05 1.30 5.09 -51.93 -0.26 1.04 16 32 H 0.27 8.20 8.73 -40.82 -0.36 7.84 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -30.51 303.13 -7.74 -38.25 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.45 Total: 4.33 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -0.15 Total: -18.37 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.10 Total: -49.04 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.45 Total: 20.97 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.36 Total: -0.71 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.51 -7.74 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407267.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.617 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds