Wall clock time and date at job start Mon Mar 30 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46863 * 2 1 4 4 H 1.08992 * 109.47331 * 54.49942 * 3 2 1 5 5 N 1.46902 * 109.46963 * 294.49527 * 3 2 1 6 6 C 1.46904 * 110.99888 * 151.12510 * 5 3 2 7 7 H 1.09007 * 109.47031 * 328.22334 * 6 5 3 8 8 C 1.52993 * 109.47217 * 88.22190 * 6 5 3 9 9 C 1.50700 * 109.47200 * 208.22688 * 6 5 3 10 10 H 1.07996 * 119.99567 * 354.46575 * 9 6 5 11 11 C 1.37876 * 119.99811 * 174.46435 * 9 6 5 12 12 N 1.31519 * 119.99710 * 164.44031 * 11 9 6 13 13 Si 1.86794 * 120.00484 * 344.44661 * 11 9 6 14 14 H 1.48500 * 109.46774 * 269.99934 * 13 11 9 15 15 H 1.48500 * 109.47016 * 29.99364 * 13 11 9 16 16 H 1.48499 * 109.47652 * 149.99786 * 13 11 9 17 17 C 1.50707 * 109.46859 * 174.49801 * 3 2 1 18 18 N 1.29027 * 124.91782 * 254.99401 * 17 3 2 19 19 C 1.31778 * 117.12778 * 179.97438 * 18 17 3 20 20 C 1.50699 * 122.75430 * 179.97438 * 19 18 17 21 21 C 1.33640 * 114.49783 * 0.02562 * 19 18 17 22 22 S 1.70975 * 124.91399 * 74.69646 * 17 3 2 23 23 H 1.08999 * 109.47110 * 185.12836 * 1 2 3 24 24 H 1.09002 * 109.47738 * 305.13139 * 1 2 3 25 25 H 1.09000 * 109.47345 * 65.13305 * 1 2 3 26 26 H 1.08995 * 109.47292 * 239.99680 * 2 1 3 27 27 H 1.09000 * 109.47151 * 119.99718 * 2 1 3 28 28 H 1.00903 * 111.00317 * 275.07475 * 5 3 2 29 29 H 1.08995 * 109.47468 * 294.04628 * 8 6 5 30 30 H 1.09004 * 109.47106 * 54.04709 * 8 6 5 31 31 H 1.09001 * 109.47080 * 174.04319 * 8 6 5 32 32 H 0.97004 * 119.99816 * 354.91197 * 12 11 9 33 33 H 1.08993 * 109.46935 * 89.99780 * 20 19 18 34 34 H 1.08999 * 109.47248 * 210.00204 * 20 19 18 35 35 H 1.09000 * 109.46379 * 330.00211 * 20 19 18 36 36 H 1.08002 * 126.03942 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5984 1.9840 0.8366 5 7 1.6617 2.0956 -1.2604 6 6 1.4918 3.5427 -1.0732 7 1 1.1291 3.7384 -0.0640 8 6 2.8358 4.2446 -1.2771 9 6 0.4949 4.0652 -2.0753 10 1 0.1011 3.4093 -2.8375 11 6 0.0856 5.3806 -2.0189 12 7 -0.5308 5.9221 -3.0467 13 14 0.4068 6.3938 -0.4828 14 1 -0.7407 6.2563 0.4497 15 1 1.6441 5.9091 0.1801 16 1 0.5723 7.8214 -0.8569 17 6 3.5408 1.4447 0.1362 18 7 4.1843 1.7522 1.2114 19 6 5.5001 1.7019 1.1594 20 6 6.3761 2.0355 2.3393 21 6 5.9940 1.3318 -0.0260 22 16 4.6370 1.0331 -1.1095 23 1 -0.3633 -1.0235 0.0919 24 1 -0.3635 0.5914 0.8404 25 1 -0.3634 0.4321 -0.9324 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.3365 1.9015 -1.9850 29 1 3.5253 3.9456 -0.4877 30 1 3.2489 3.9639 -2.2460 31 1 2.6906 5.3243 -1.2431 32 1 -0.6322 5.4205 -3.8708 33 1 6.5614 1.1325 2.9210 34 1 7.3241 2.4405 1.9851 35 1 5.8763 2.7747 2.9652 36 1 7.0401 1.2297 -0.2746 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067407267.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:31 Heat of formation + Delta-G solvation = 12.413812 kcal Electronic energy + Delta-G solvation = -17130.057934 eV Core-core repulsion = 14546.757137 eV Total energy + Delta-G solvation = -2583.300797 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99895 -38.69905 -35.67629 -33.71774 -32.73702 -30.47083 -28.58359 -27.44288 -26.63358 -24.13843 -22.22194 -21.99675 -20.47700 -19.59238 -18.70884 -16.91382 -16.62108 -16.18428 -15.66098 -15.30069 -15.14000 -14.80957 -14.37305 -14.13011 -14.00313 -13.67302 -13.47831 -13.32008 -13.18552 -12.96203 -12.50279 -12.49768 -12.28530 -11.99887 -11.93408 -11.74844 -11.48465 -11.06322 -10.67219 -10.48802 -10.37445 -9.70995 -9.34194 -8.66952 -6.30081 -0.29201 0.37252 0.78251 1.45596 1.48996 1.66628 1.77906 2.48034 2.98761 3.08387 3.34167 3.90740 4.11962 4.17811 4.26318 4.34834 4.40992 4.49874 4.60591 4.67080 4.71218 4.75697 4.82827 4.92058 4.96485 4.97288 5.11063 5.26756 5.31240 5.35074 5.56853 5.79498 6.10529 6.29549 6.49569 6.73264 6.79222 7.45290 8.68606 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.007483 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.720806 B = 3740.800958 C = 4303.614479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 C 0.156 3.844 4 H 0.084 0.916 5 N -0.657 5.657 6 C 0.193 3.807 7 H 0.026 0.974 8 C -0.162 4.162 9 C -0.577 4.577 10 H 0.028 0.972 11 C -0.018 4.018 12 N -0.942 5.942 13 Si 1.078 2.922 14 H -0.274 1.274 15 H -0.250 1.250 16 H -0.286 1.286 17 C 0.022 3.978 18 N -0.497 5.497 19 C 0.044 3.956 20 C -0.074 4.074 21 C -0.262 4.262 22 S 0.127 5.873 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.333 0.667 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.254 0.746 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.336 -11.892 9.018 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C 0.041 3.959 4 H 0.102 0.898 5 N -0.287 5.287 6 C 0.083 3.917 7 H 0.044 0.956 8 C -0.222 4.222 9 C -0.615 4.615 10 H 0.046 0.954 11 C -0.216 4.216 12 N -0.578 5.578 13 Si 0.900 3.100 14 H -0.200 1.200 15 H -0.174 1.174 16 H -0.212 1.212 17 C -0.258 4.258 18 N -0.213 5.213 19 C -0.088 4.088 20 C -0.133 4.133 21 C -0.401 4.401 22 S 0.382 5.618 23 H 0.089 0.911 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.152 0.848 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 12.967 -10.733 9.170 19.168 hybrid contribution 1.310 -0.728 -0.502 1.580 sum 14.277 -11.461 8.668 20.256 Atomic orbital electron populations 1.21574 0.94364 1.01586 1.01865 1.21462 0.97254 0.92312 1.02274 1.20643 0.83108 0.98183 0.93936 0.89800 1.60877 1.50641 1.11820 1.05318 1.19462 0.92260 0.84118 0.95826 0.95643 1.22690 0.98880 1.01235 0.99367 1.22105 1.27220 0.96609 1.15594 0.95379 1.26918 0.93609 0.97223 1.03895 1.70919 1.43902 1.39631 1.03383 0.83675 0.78157 0.74914 0.73257 1.20016 1.17444 1.21174 1.28405 1.03051 1.01667 0.92630 1.66177 1.08675 1.18093 1.28373 1.20900 0.89095 1.01216 0.97574 1.20432 0.97227 1.02769 0.92867 1.27181 1.04689 1.12235 0.95981 1.83861 0.97888 1.62455 1.17622 0.91064 0.93534 0.93310 0.91210 0.90758 0.84812 0.94856 0.93489 0.93587 0.93701 0.89359 0.88581 0.91502 0.77649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.74 71.98 0.70 -3.18 16 2 C -0.09 -2.63 5.59 30.59 0.17 -2.46 16 3 C 0.16 5.31 2.52 44.17 0.11 5.42 16 4 H 0.08 3.15 7.32 -2.39 -0.02 3.13 16 5 N -0.66 -26.35 5.61 -477.15 -2.68 -29.03 16 6 C 0.19 9.06 2.14 44.17 0.09 9.16 16 7 H 0.03 1.24 5.95 -2.38 -0.01 1.22 16 8 C -0.16 -7.09 8.21 71.98 0.59 -6.50 16 9 C -0.58 -32.75 9.12 25.60 0.23 -32.52 16 10 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 11 C -0.02 -1.07 5.32 84.65 0.45 -0.62 16 12 N -0.94 -59.36 13.70 21.45 0.29 -59.06 16 13 Si 1.08 51.10 26.18 68.60 1.80 52.89 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.25 -10.80 5.55 99.48 0.55 -10.25 16 16 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 17 C 0.02 0.71 4.68 88.52 0.41 1.12 16 18 N -0.50 -16.03 10.53 -179.40 -1.89 -17.92 16 19 C 0.04 1.14 6.74 41.52 0.28 1.42 16 20 C -0.07 -1.34 10.31 71.24 0.73 -0.60 16 21 C -0.26 -5.95 11.13 66.78 0.74 -5.20 16 22 S 0.13 3.36 21.94 -56.49 -1.24 2.12 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.64 7.91 -2.39 -0.02 1.62 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.33 12.76 6.92 -89.69 -0.62 12.14 16 29 H 0.03 1.34 6.89 -2.39 -0.02 1.32 16 30 H 0.05 1.99 8.01 -2.38 -0.02 1.97 16 31 H 0.05 2.07 5.09 -2.39 -0.01 2.06 16 32 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -66.65 303.13 1.06 -65.58 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.26 Total: 19.36 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 4.53 Total: -33.96 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.27 Total: -106.01 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 1.80 Total: 52.89 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.24 Total: 2.12 kcal Total: -66.65 1.06 -65.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407267.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.999 kcal (2) G-P(sol) polarization free energy of solvation -66.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds