Wall clock time and date at job start Mon Mar 30 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46908 * 2 1 4 4 H 1.08999 * 109.47055 * 54.81842 * 3 2 1 5 5 N 1.46904 * 109.47342 * 294.81786 * 3 2 1 6 6 C 1.46899 * 110.99945 * 156.47911 * 5 3 2 7 7 H 1.08998 * 109.47243 * 34.75429 * 6 5 3 8 8 C 1.53002 * 109.47032 * 274.75738 * 6 5 3 9 9 C 1.50702 * 109.47363 * 154.75671 * 6 5 3 10 10 H 1.07995 * 119.99554 * 0.02562 * 9 6 5 11 11 C 1.37869 * 120.00037 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00170 * 359.97438 * 11 9 6 13 13 Si 1.86805 * 119.99973 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.46884 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47540 * 119.99658 * 13 11 9 16 16 H 1.48504 * 109.46961 * 239.99912 * 13 11 9 17 17 C 1.50707 * 109.47227 * 174.81587 * 3 2 1 18 18 N 1.29020 * 124.91652 * 255.00619 * 17 3 2 19 19 C 1.31782 * 117.12489 * 179.97438 * 18 17 3 20 20 C 1.50698 * 122.75356 * 180.02562 * 19 18 17 21 21 C 1.33645 * 114.49812 * 359.97438 * 19 18 17 22 22 S 1.70974 * 124.91127 * 74.69707 * 17 3 2 23 23 H 1.09005 * 109.46523 * 175.41713 * 1 2 3 24 24 H 1.08995 * 109.46895 * 55.42365 * 1 2 3 25 25 H 1.08990 * 109.47105 * 295.41825 * 1 2 3 26 26 H 1.08999 * 109.47333 * 120.00383 * 2 1 3 27 27 H 1.09001 * 109.47344 * 240.00401 * 2 1 3 28 28 H 1.00897 * 111.00062 * 280.42856 * 5 3 2 29 29 H 1.09001 * 109.47328 * 63.51574 * 8 6 5 30 30 H 1.08997 * 109.47086 * 183.51327 * 8 6 5 31 31 H 1.08998 * 109.47134 * 303.51401 * 8 6 5 32 32 H 0.97007 * 120.00210 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.47241 * 89.99642 * 20 19 18 34 34 H 1.08998 * 109.47435 * 209.99870 * 20 19 18 35 35 H 1.09004 * 109.46754 * 329.99880 * 20 19 18 36 36 H 1.07994 * 126.03441 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 0.8399 5 7 1.6551 2.0980 -1.2571 6 6 1.6099 3.5576 -1.0974 7 1 2.3896 3.8715 -0.4034 8 6 0.2424 3.9683 -0.5476 9 6 1.8323 4.2164 -2.4343 10 1 1.9909 3.6113 -3.3147 11 6 1.8322 5.5915 -2.5337 12 7 1.6375 6.3283 -1.4619 13 14 2.1071 6.4082 -4.1912 14 1 2.2997 5.3655 -5.2308 15 1 0.9256 7.2391 -4.5358 16 1 3.3153 7.2691 -4.1244 17 6 3.5416 1.4445 0.1284 18 7 4.1907 1.7499 1.2008 19 6 5.5062 1.6997 1.1417 20 6 6.3884 2.0299 2.3180 21 6 5.9939 1.3310 -0.0467 22 16 4.6313 1.0352 -1.1239 23 1 -0.3632 -1.0245 -0.0821 24 1 -0.3633 0.5832 -0.8461 25 1 -0.3633 0.4411 0.9281 26 1 1.8934 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.2771 1.8355 -2.0069 29 1 0.1076 3.5423 0.4467 30 1 0.1864 5.0551 -0.4878 31 1 -0.5410 3.5999 -1.2099 32 1 1.6370 7.2958 -1.5319 33 1 6.5767 1.1252 2.8962 34 1 7.3345 2.4359 1.9601 35 1 5.8919 2.7673 2.9488 36 1 7.0386 1.2294 -0.3009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067407269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:37 Heat of formation + Delta-G solvation = 29.279201 kcal Electronic energy + Delta-G solvation = -17029.471508 eV Core-core repulsion = 14446.902049 eV Total energy + Delta-G solvation = -2582.569459 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.60999 -36.92819 -33.80652 -31.55614 -31.45998 -28.51385 -27.40198 -25.80852 -25.04381 -22.88550 -20.68278 -19.99785 -19.17909 -17.40561 -16.44832 -15.44880 -14.98623 -14.68364 -14.32876 -13.74340 -13.64817 -13.16408 -13.09501 -12.52334 -12.39676 -12.33459 -11.89271 -11.40343 -11.33967 -11.05872 -11.02728 -10.83980 -10.68670 -10.41072 -10.35304 -10.16235 -9.94612 -9.29894 -9.05984 -8.85143 -8.53796 -8.35602 -7.53483 -6.03783 -4.11023 1.04204 1.70436 2.09762 3.09912 3.27555 3.35467 3.39294 4.32944 4.39704 5.05704 5.17311 5.28228 5.31131 5.41492 5.49899 5.60393 5.65765 5.80840 5.90534 6.00254 6.12873 6.21551 6.28031 6.48949 6.53677 6.79222 6.85404 7.13674 7.18825 7.42882 7.73976 7.84239 8.09892 8.20206 8.28976 8.55049 8.97316 9.54841 11.02199 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.007732 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.169678 B = 3620.669932 C = 4397.347288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C 0.156 3.844 4 H 0.102 0.898 5 N -0.665 5.665 6 C 0.210 3.790 7 H 0.005 0.995 8 C -0.125 4.125 9 C -0.519 4.519 10 H 0.060 0.940 11 C 0.063 3.937 12 N -0.887 5.887 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.285 1.285 17 C 0.051 3.949 18 N -0.477 5.477 19 C 0.067 3.933 20 C -0.076 4.076 21 C -0.280 4.280 22 S 0.120 5.880 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.330 0.670 29 H 0.005 0.995 30 H 0.083 0.917 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.692 -11.151 3.664 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C 0.041 3.959 4 H 0.120 0.880 5 N -0.296 5.296 6 C 0.103 3.897 7 H 0.022 0.978 8 C -0.183 4.183 9 C -0.557 4.557 10 H 0.079 0.921 11 C -0.139 4.139 12 N -0.526 5.526 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.211 1.211 17 C -0.229 4.229 18 N -0.192 5.192 19 C -0.066 4.066 20 C -0.135 4.135 21 C -0.419 4.419 22 S 0.376 5.624 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.024 0.976 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.572 -11.187 3.214 12.505 hybrid contribution 1.832 1.097 -0.129 2.139 sum 6.403 -10.089 3.085 12.342 Atomic orbital electron populations 1.21634 0.94513 1.00683 1.02987 1.21502 0.97274 0.94272 1.01161 1.20592 0.81846 0.96663 0.96830 0.87998 1.61073 1.53705 1.12310 1.02551 1.19181 0.93976 0.80224 0.96362 0.97769 1.21729 0.97716 1.03239 0.95664 1.21252 1.49248 0.91497 0.93732 0.92143 1.24900 0.95026 0.97327 0.96634 1.69908 1.49504 1.05239 1.27906 0.86494 0.77735 0.79451 0.84068 1.19670 1.20903 1.21138 1.28727 1.03324 0.99562 0.91327 1.66158 1.06922 1.17834 1.28310 1.20313 0.89749 1.00748 0.95808 1.20314 0.97016 1.02034 0.94159 1.26698 1.03484 1.14625 0.97084 1.83828 0.97719 1.62683 1.18182 0.93659 0.90525 0.93276 0.92416 0.92087 0.85059 0.97568 0.89854 0.94838 0.92950 0.91032 0.91053 0.90652 0.81191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.85 37.16 0.37 -1.63 16 2 C -0.10 -1.54 5.59 -26.73 -0.15 -1.69 16 3 C 0.16 2.88 2.33 -68.86 -0.16 2.72 16 4 H 0.10 2.06 7.16 -51.93 -0.37 1.69 16 5 N -0.67 -13.85 5.43 -102.16 -0.55 -14.41 16 6 C 0.21 5.28 2.41 -68.86 -0.17 5.12 16 7 H 0.00 0.13 7.58 -51.93 -0.39 -0.26 16 8 C -0.13 -3.10 9.21 37.16 0.34 -2.75 16 9 C -0.52 -14.13 8.59 -34.44 -0.30 -14.43 16 10 H 0.06 1.62 7.61 -52.49 -0.40 1.22 16 11 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 12 N -0.89 -25.51 11.29 55.43 0.63 -24.88 16 13 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.05 0.96 5.89 -13.46 -0.08 0.88 16 18 N -0.48 -9.13 10.53 -8.06 -0.08 -9.21 16 19 C 0.07 1.09 6.74 -84.22 -0.57 0.53 16 20 C -0.08 -0.94 10.31 36.00 0.37 -0.57 16 21 C -0.28 -4.21 11.13 29.12 0.32 -3.89 16 22 S 0.12 1.95 22.01 -107.50 -2.37 -0.41 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 1.22 7.64 -51.93 -0.40 0.82 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.33 6.79 6.93 -39.29 -0.27 6.52 16 29 H 0.01 0.12 7.47 -51.93 -0.39 -0.27 16 30 H 0.08 2.27 5.98 -51.93 -0.31 1.96 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -29.52 309.32 -8.32 -37.84 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.47 Total: 4.20 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -0.11 Total: -14.07 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.01 Total: -48.50 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.37 Total: -0.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.52 -8.32 -37.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.122 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds