Wall clock time and date at job start Mon Mar 30 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46908 * 2 1 4 4 H 1.08999 * 109.47055 * 54.81842 * 3 2 1 5 5 N 1.46904 * 109.47342 * 294.81786 * 3 2 1 6 6 C 1.46899 * 110.99945 * 156.47911 * 5 3 2 7 7 H 1.08998 * 109.47243 * 34.75429 * 6 5 3 8 8 C 1.53002 * 109.47032 * 274.75738 * 6 5 3 9 9 C 1.50702 * 109.47363 * 154.75671 * 6 5 3 10 10 H 1.07995 * 119.99554 * 0.02562 * 9 6 5 11 11 C 1.37869 * 120.00037 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00170 * 359.97438 * 11 9 6 13 13 Si 1.86805 * 119.99973 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.46884 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47540 * 119.99658 * 13 11 9 16 16 H 1.48504 * 109.46961 * 239.99912 * 13 11 9 17 17 C 1.50707 * 109.47227 * 174.81587 * 3 2 1 18 18 N 1.29020 * 124.91652 * 255.00619 * 17 3 2 19 19 C 1.31782 * 117.12489 * 179.97438 * 18 17 3 20 20 C 1.50698 * 122.75356 * 180.02562 * 19 18 17 21 21 C 1.33645 * 114.49812 * 359.97438 * 19 18 17 22 22 S 1.70974 * 124.91127 * 74.69707 * 17 3 2 23 23 H 1.09005 * 109.46523 * 175.41713 * 1 2 3 24 24 H 1.08995 * 109.46895 * 55.42365 * 1 2 3 25 25 H 1.08990 * 109.47105 * 295.41825 * 1 2 3 26 26 H 1.08999 * 109.47333 * 120.00383 * 2 1 3 27 27 H 1.09001 * 109.47344 * 240.00401 * 2 1 3 28 28 H 1.00897 * 111.00062 * 280.42856 * 5 3 2 29 29 H 1.09001 * 109.47328 * 63.51574 * 8 6 5 30 30 H 1.08997 * 109.47086 * 183.51327 * 8 6 5 31 31 H 1.08998 * 109.47134 * 303.51401 * 8 6 5 32 32 H 0.97007 * 120.00210 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.47241 * 89.99642 * 20 19 18 34 34 H 1.08998 * 109.47435 * 209.99870 * 20 19 18 35 35 H 1.09004 * 109.46754 * 329.99880 * 20 19 18 36 36 H 1.07994 * 126.03441 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 0.8399 5 7 1.6551 2.0980 -1.2571 6 6 1.6099 3.5576 -1.0974 7 1 2.3896 3.8715 -0.4034 8 6 0.2424 3.9683 -0.5476 9 6 1.8323 4.2164 -2.4343 10 1 1.9909 3.6113 -3.3147 11 6 1.8322 5.5915 -2.5337 12 7 1.6375 6.3283 -1.4619 13 14 2.1071 6.4082 -4.1912 14 1 2.2997 5.3655 -5.2308 15 1 0.9256 7.2391 -4.5358 16 1 3.3153 7.2691 -4.1244 17 6 3.5416 1.4445 0.1284 18 7 4.1907 1.7499 1.2008 19 6 5.5062 1.6997 1.1417 20 6 6.3884 2.0299 2.3180 21 6 5.9939 1.3310 -0.0467 22 16 4.6313 1.0352 -1.1239 23 1 -0.3632 -1.0245 -0.0821 24 1 -0.3633 0.5832 -0.8461 25 1 -0.3633 0.4411 0.9281 26 1 1.8934 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.2771 1.8355 -2.0069 29 1 0.1076 3.5423 0.4467 30 1 0.1864 5.0551 -0.4878 31 1 -0.5410 3.5999 -1.2099 32 1 1.6370 7.2958 -1.5319 33 1 6.5767 1.1252 2.8962 34 1 7.3345 2.4359 1.9601 35 1 5.8919 2.7673 2.9488 36 1 7.0386 1.2294 -0.3009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067407269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:37 Heat of formation + Delta-G solvation = 10.539901 kcal Electronic energy + Delta-G solvation = -17030.284105 eV Core-core repulsion = 14446.902049 eV Total energy + Delta-G solvation = -2583.382056 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.92619 -38.52856 -35.62760 -33.28301 -32.72057 -30.18705 -28.56005 -27.51910 -26.95432 -24.14969 -22.29251 -21.68408 -20.53246 -18.84112 -18.32419 -17.05318 -16.63561 -16.12552 -15.79222 -15.37486 -15.02511 -14.67180 -14.36377 -14.15792 -13.70004 -13.44564 -13.41459 -13.02206 -12.86542 -12.76998 -12.57659 -12.37313 -12.27133 -12.20319 -12.13943 -11.71297 -11.64947 -10.92475 -10.66894 -10.59266 -10.35094 -9.67046 -9.28364 -8.14584 -6.29552 -0.25376 0.42512 0.81080 1.39729 1.41582 1.53335 1.80819 2.39682 3.06302 3.14851 3.48242 3.94593 4.18838 4.22148 4.27772 4.36293 4.61341 4.69679 4.74274 4.81532 4.83767 4.93898 4.97592 5.07311 5.15528 5.18916 5.28617 5.35525 5.46054 5.61820 5.63627 5.82513 6.19345 6.32483 6.62616 6.83380 6.91956 7.40828 8.91117 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.007732 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.169678 B = 3620.669932 C = 4397.347288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C 0.159 3.841 4 H 0.076 0.924 5 N -0.656 5.656 6 C 0.221 3.779 7 H -0.039 1.039 8 C -0.114 4.114 9 C -0.534 4.534 10 H 0.063 0.937 11 C 0.014 3.986 12 N -0.918 5.918 13 Si 0.960 3.040 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.284 1.284 17 C 0.019 3.981 18 N -0.506 5.506 19 C 0.040 3.960 20 C -0.072 4.072 21 C -0.268 4.268 22 S 0.136 5.864 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.333 0.667 29 H 0.017 0.983 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.262 0.738 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.857 -12.349 2.769 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C 0.044 3.956 4 H 0.094 0.906 5 N -0.287 5.287 6 C 0.113 3.887 7 H -0.021 1.021 8 C -0.172 4.172 9 C -0.573 4.573 10 H 0.081 0.919 11 C -0.186 4.186 12 N -0.557 5.557 13 Si 0.786 3.214 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.210 1.210 17 C -0.261 4.261 18 N -0.222 5.222 19 C -0.092 4.092 20 C -0.132 4.132 21 C -0.407 4.407 22 S 0.391 5.609 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.734 -12.410 2.327 13.867 hybrid contribution 1.537 1.438 0.199 2.114 sum 7.271 -10.972 2.525 13.402 Atomic orbital electron populations 1.21602 0.93811 1.02041 1.01979 1.21467 0.97756 0.91873 1.02229 1.20540 0.82520 0.98069 0.94481 0.90617 1.60983 1.54152 1.09651 1.03912 1.18871 0.92542 0.82699 0.94601 1.02117 1.21548 0.97720 1.01467 0.96474 1.21575 1.49191 0.92022 0.94473 0.91923 1.25729 0.94729 0.98005 1.00110 1.70048 1.50230 1.05455 1.29970 0.85470 0.77570 0.78472 0.79935 1.18610 1.20455 1.20964 1.28596 1.03571 1.01362 0.92528 1.66164 1.08617 1.18177 1.29220 1.20929 0.89237 1.01304 0.97695 1.20423 0.97058 1.02767 0.92919 1.27176 1.04756 1.12736 0.95986 1.83660 0.97713 1.62050 1.17480 0.90922 0.92416 0.93557 0.91235 0.90968 0.84840 0.96363 0.92463 0.94447 0.92915 0.89031 0.88627 0.91859 0.77574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.85 71.98 0.71 -3.02 16 2 C -0.09 -2.74 5.59 30.59 0.17 -2.57 16 3 C 0.16 5.93 2.33 44.17 0.10 6.04 16 4 H 0.08 3.20 7.16 -2.39 -0.02 3.18 16 5 N -0.66 -27.63 5.43 -477.14 -2.59 -30.22 16 6 C 0.22 11.44 2.41 44.17 0.11 11.54 16 7 H -0.04 -2.32 7.58 -2.39 -0.02 -2.33 16 8 C -0.11 -5.78 9.21 71.98 0.66 -5.11 16 9 C -0.53 -29.37 8.59 25.60 0.22 -29.15 16 10 H 0.06 3.34 7.61 -2.91 -0.02 3.32 16 11 C 0.01 0.75 5.30 84.65 0.45 1.20 16 12 N -0.92 -53.80 11.29 21.44 0.24 -53.56 16 13 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 14 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 17 C 0.02 0.71 5.89 88.52 0.52 1.23 16 18 N -0.51 -19.44 10.53 -179.40 -1.89 -21.33 16 19 C 0.04 1.27 6.74 41.52 0.28 1.55 16 20 C -0.07 -1.66 10.31 71.24 0.73 -0.93 16 21 C -0.27 -7.46 11.13 66.78 0.74 -6.72 16 22 S 0.14 4.26 22.01 -56.49 -1.24 3.01 16 23 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 24 H 0.06 1.79 7.64 -2.39 -0.02 1.78 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.33 13.66 6.93 -89.70 -0.62 13.04 16 29 H 0.02 0.83 7.47 -2.39 -0.02 0.81 16 30 H 0.06 3.21 5.98 -2.39 -0.01 3.20 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.10 1.70 8.12 -2.39 -0.02 1.68 16 35 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.21 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -64.38 309.32 1.69 -62.69 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.44 Total: 19.70 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 4.70 Total: -25.93 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -4.24 Total: -105.10 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.24 Total: 3.01 kcal Total: -64.38 1.69 -62.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.229 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds