Wall clock time and date at job start Mon Mar 30 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47192 * 2 1 4 4 H 1.09008 * 109.46946 * 54.45434 * 3 2 1 5 5 N 1.46897 * 109.47108 * 174.45471 * 3 2 1 6 6 C 1.46908 * 110.99976 * 273.79455 * 5 3 2 7 7 H 1.08997 * 109.46872 * 33.56276 * 6 5 3 8 8 C 1.52999 * 109.46997 * 273.55861 * 6 5 3 9 9 C 1.50703 * 109.46879 * 153.55853 * 6 5 3 10 10 H 1.07995 * 119.99939 * 0.02562 * 9 6 5 11 11 C 1.37874 * 119.99757 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00030 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 119.99987 * 180.02562 * 11 9 6 14 14 H 1.48493 * 109.47469 * 59.99807 * 13 11 9 15 15 H 1.48502 * 109.47189 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46956 * 299.99966 * 13 11 9 17 17 C 1.50701 * 109.47301 * 294.45744 * 3 2 1 18 18 N 1.29019 * 124.92035 * 104.97946 * 17 3 2 19 19 C 1.31782 * 117.12850 * 180.02562 * 18 17 3 20 20 C 1.50700 * 122.75195 * 180.02562 * 19 18 17 21 21 C 1.33644 * 114.49618 * 0.02562 * 19 18 17 22 22 S 1.70981 * 124.91339 * 285.02329 * 17 3 2 23 23 H 1.09000 * 109.47471 * 305.56383 * 1 2 3 24 24 H 1.09004 * 109.46922 * 65.56754 * 1 2 3 25 25 H 1.09005 * 109.47404 * 185.56169 * 1 2 3 26 26 H 1.08998 * 109.47597 * 239.99596 * 2 1 3 27 27 H 1.09000 * 109.46943 * 119.99744 * 2 1 3 28 28 H 1.00903 * 111.00179 * 149.84793 * 5 3 2 29 29 H 1.09000 * 109.46683 * 179.97438 * 8 6 5 30 30 H 1.08997 * 109.47649 * 299.99940 * 8 6 5 31 31 H 1.09003 * 109.47141 * 60.00172 * 8 6 5 32 32 H 0.97007 * 120.00151 * 179.97438 * 12 11 9 33 33 H 1.08993 * 109.47012 * 269.97837 * 20 19 18 34 34 H 1.09000 * 109.47008 * 29.97827 * 20 19 18 35 35 H 1.08997 * 109.47006 * 149.97815 * 20 19 18 36 36 H 1.07997 * 126.03543 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 0.8362 5 7 3.5029 1.4446 0.1338 6 6 3.9023 1.3987 1.5468 7 1 3.1797 0.8080 2.1096 8 6 3.9483 2.8205 2.1102 9 6 5.2661 0.7680 1.6630 10 1 5.7843 0.4349 0.7760 11 6 5.8520 0.6161 2.9018 12 7 5.2211 1.0221 3.9819 13 14 7.5427 -0.1651 3.0458 14 1 8.5272 0.6404 2.2797 15 1 7.9459 -0.2127 4.4743 16 1 7.4988 -1.5447 2.4982 17 6 1.6529 2.1122 -1.2933 18 7 0.7076 2.9810 -1.4211 19 6 0.4995 3.4695 -2.6271 20 6 -0.5697 4.4904 -2.9199 21 6 1.3143 2.9854 -3.5693 22 16 2.4021 1.8299 -2.8041 23 1 -0.3634 0.5977 0.8359 24 1 -0.3633 0.4251 -0.9357 25 1 -0.3634 -1.0229 0.0996 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9073 2.2440 -0.3304 29 1 4.2442 2.7863 3.1587 30 1 4.6710 3.4112 1.5474 31 1 2.9619 3.2767 2.0261 32 1 5.6332 0.9149 4.8535 33 1 -1.4969 3.9806 -3.1815 34 1 -0.7320 5.1098 -2.0378 35 1 -0.2535 5.1192 -3.7522 36 1 1.3078 3.2555 -4.6150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067407271.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:40 Heat of formation + Delta-G solvation = 31.137499 kcal Electronic energy + Delta-G solvation = -16823.472155 eV Core-core repulsion = 14240.983278 eV Total energy + Delta-G solvation = -2582.488877 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.76419 -36.94890 -33.87252 -31.70075 -31.47167 -28.60365 -27.51900 -25.42932 -24.99983 -23.27031 -20.85929 -20.02301 -19.19136 -17.48541 -16.40340 -15.35735 -15.03588 -14.71015 -14.48284 -13.93834 -13.55492 -13.30154 -12.93923 -12.57256 -12.39582 -12.37156 -11.97080 -11.69823 -11.28026 -11.06672 -11.00247 -10.90965 -10.79498 -10.58960 -10.44448 -10.10822 -9.92006 -9.38249 -9.20041 -9.00653 -8.49541 -8.36148 -7.41146 -5.98874 -4.02336 0.90324 1.60725 2.04246 2.94346 3.34991 3.39024 3.42216 4.15603 4.45260 5.04745 5.07430 5.20161 5.31090 5.33025 5.51842 5.54934 5.57499 5.69348 5.88809 5.91659 6.03361 6.18209 6.33182 6.33994 6.55104 6.68367 6.72941 6.83099 7.07250 7.27407 7.71329 7.84969 7.95459 8.22348 8.41464 8.54014 9.03898 9.62723 11.08180 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.005346 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.279248 B = 5236.457084 C = 5347.931415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C 0.158 3.842 4 H 0.069 0.931 5 N -0.675 5.675 6 C 0.213 3.787 7 H 0.039 0.961 8 C -0.170 4.170 9 C -0.495 4.495 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.898 3.102 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.069 3.931 18 N -0.479 5.479 19 C 0.065 3.935 20 C -0.076 4.076 21 C -0.290 4.290 22 S 0.153 5.847 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.327 0.673 29 H 0.091 0.909 30 H 0.028 0.972 31 H 0.006 0.994 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 2.897 -12.645 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C 0.045 3.955 4 H 0.086 0.914 5 N -0.306 5.306 6 C 0.106 3.894 7 H 0.057 0.943 8 C -0.230 4.230 9 C -0.534 4.534 10 H 0.081 0.919 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.727 3.273 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.203 1.203 17 C -0.209 4.209 18 N -0.194 5.194 19 C -0.068 4.068 20 C -0.135 4.135 21 C -0.430 4.430 22 S 0.409 5.591 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.145 0.855 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.562 1.718 -12.401 15.167 hybrid contribution 0.066 1.256 0.223 1.277 sum -8.496 2.974 -12.178 15.144 Atomic orbital electron populations 1.21753 0.96218 1.01067 1.01513 1.21541 0.94441 0.94874 1.03623 1.20233 0.91818 0.94748 0.88730 0.91377 1.61118 1.03207 1.47072 1.19249 1.19245 0.96631 0.92496 0.81015 0.94349 1.22446 0.96346 0.98672 1.05503 1.21066 1.01299 1.38293 0.92728 0.91875 1.24936 0.97868 0.95844 0.95784 1.69874 1.38172 1.47536 0.98050 0.86557 0.84228 0.79869 0.76688 1.20392 1.21494 1.20274 1.27439 0.95361 0.97455 1.00654 1.66186 1.18174 1.11160 1.23886 1.20269 0.99228 1.00008 0.87328 1.20311 0.95206 0.95742 1.02290 1.26866 1.04011 1.07260 1.04845 1.84177 1.34170 1.38676 1.02088 0.92647 0.93583 0.92839 0.91665 0.89918 0.85523 0.89063 0.95330 0.97509 0.92979 0.90977 0.90768 0.91074 0.81222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.64 37.16 0.36 -1.80 16 2 C -0.11 -1.78 5.62 -26.73 -0.15 -1.93 16 3 C 0.16 2.91 2.40 -68.87 -0.16 2.75 16 4 H 0.07 1.37 7.22 -51.92 -0.37 1.00 16 5 N -0.68 -14.06 5.87 -102.17 -0.60 -14.66 16 6 C 0.21 5.24 2.36 -68.86 -0.16 5.08 16 7 H 0.04 1.02 7.19 -51.93 -0.37 0.65 16 8 C -0.17 -4.12 8.92 37.16 0.33 -3.79 16 9 C -0.50 -13.40 8.84 -34.44 -0.30 -13.70 16 10 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 11 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 12 N -0.90 -25.34 11.32 55.43 0.63 -24.71 16 13 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 17 C 0.07 1.16 5.09 -13.46 -0.07 1.10 16 18 N -0.48 -8.02 10.53 -8.06 -0.08 -8.10 16 19 C 0.06 0.91 6.74 -84.22 -0.57 0.34 16 20 C -0.08 -0.79 10.31 36.01 0.37 -0.41 16 21 C -0.29 -3.69 11.13 29.12 0.32 -3.37 16 22 S 0.15 2.20 22.84 -107.50 -2.46 -0.25 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.68 7.58 -51.93 -0.39 0.28 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.52 7.49 -51.93 -0.39 1.14 16 28 H 0.33 6.71 7.93 -39.29 -0.31 6.39 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 30 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.01 0.13 7.55 -51.93 -0.39 -0.26 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 36 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 309.93 15.07 4.67 4.67 Total: -1.00 -28.42 309.93 -8.47 -36.89 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.47 Total: 4.21 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -0.13 Total: -14.30 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.06 Total: -47.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.46 Total: -0.25 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.42 -8.47 -36.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407271.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.024 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds