Wall clock time and date at job start Mon Mar 30 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47192 * 2 1 4 4 H 1.09008 * 109.46946 * 54.45434 * 3 2 1 5 5 N 1.46897 * 109.47108 * 174.45471 * 3 2 1 6 6 C 1.46908 * 110.99976 * 273.79455 * 5 3 2 7 7 H 1.08997 * 109.46872 * 33.56276 * 6 5 3 8 8 C 1.52999 * 109.46997 * 273.55861 * 6 5 3 9 9 C 1.50703 * 109.46879 * 153.55853 * 6 5 3 10 10 H 1.07995 * 119.99939 * 0.02562 * 9 6 5 11 11 C 1.37874 * 119.99757 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00030 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 119.99987 * 180.02562 * 11 9 6 14 14 H 1.48493 * 109.47469 * 59.99807 * 13 11 9 15 15 H 1.48502 * 109.47189 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46956 * 299.99966 * 13 11 9 17 17 C 1.50701 * 109.47301 * 294.45744 * 3 2 1 18 18 N 1.29019 * 124.92035 * 104.97946 * 17 3 2 19 19 C 1.31782 * 117.12850 * 180.02562 * 18 17 3 20 20 C 1.50700 * 122.75195 * 180.02562 * 19 18 17 21 21 C 1.33644 * 114.49618 * 0.02562 * 19 18 17 22 22 S 1.70981 * 124.91339 * 285.02329 * 17 3 2 23 23 H 1.09000 * 109.47471 * 305.56383 * 1 2 3 24 24 H 1.09004 * 109.46922 * 65.56754 * 1 2 3 25 25 H 1.09005 * 109.47404 * 185.56169 * 1 2 3 26 26 H 1.08998 * 109.47597 * 239.99596 * 2 1 3 27 27 H 1.09000 * 109.46943 * 119.99744 * 2 1 3 28 28 H 1.00903 * 111.00179 * 149.84793 * 5 3 2 29 29 H 1.09000 * 109.46683 * 179.97438 * 8 6 5 30 30 H 1.08997 * 109.47649 * 299.99940 * 8 6 5 31 31 H 1.09003 * 109.47141 * 60.00172 * 8 6 5 32 32 H 0.97007 * 120.00151 * 179.97438 * 12 11 9 33 33 H 1.08993 * 109.47012 * 269.97837 * 20 19 18 34 34 H 1.09000 * 109.47008 * 29.97827 * 20 19 18 35 35 H 1.08997 * 109.47006 * 149.97815 * 20 19 18 36 36 H 1.07997 * 126.03543 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 0.8362 5 7 3.5029 1.4446 0.1338 6 6 3.9023 1.3987 1.5468 7 1 3.1797 0.8080 2.1096 8 6 3.9483 2.8205 2.1102 9 6 5.2661 0.7680 1.6630 10 1 5.7843 0.4349 0.7760 11 6 5.8520 0.6161 2.9018 12 7 5.2211 1.0221 3.9819 13 14 7.5427 -0.1651 3.0458 14 1 8.5272 0.6404 2.2797 15 1 7.9459 -0.2127 4.4743 16 1 7.4988 -1.5447 2.4982 17 6 1.6529 2.1122 -1.2933 18 7 0.7076 2.9810 -1.4211 19 6 0.4995 3.4695 -2.6271 20 6 -0.5697 4.4904 -2.9199 21 6 1.3143 2.9854 -3.5693 22 16 2.4021 1.8299 -2.8041 23 1 -0.3634 0.5977 0.8359 24 1 -0.3633 0.4251 -0.9357 25 1 -0.3634 -1.0229 0.0996 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9073 2.2440 -0.3304 29 1 4.2442 2.7863 3.1587 30 1 4.6710 3.4112 1.5474 31 1 2.9619 3.2767 2.0261 32 1 5.6332 0.9149 4.8535 33 1 -1.4969 3.9806 -3.1815 34 1 -0.7320 5.1098 -2.0378 35 1 -0.2535 5.1192 -3.7522 36 1 1.3078 3.2555 -4.6150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067407271.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:39 Heat of formation + Delta-G solvation = 13.314012 kcal Electronic energy + Delta-G solvation = -16824.245039 eV Core-core repulsion = 14240.983278 eV Total energy + Delta-G solvation = -2583.261762 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.93048 -38.54783 -35.63096 -33.51756 -32.54693 -30.27981 -28.49469 -27.28705 -26.71065 -24.53511 -22.55685 -21.50207 -20.44828 -18.85411 -18.13104 -16.94730 -16.57478 -16.12624 -16.09007 -15.10627 -14.92974 -14.78164 -14.27458 -14.14880 -13.63371 -13.47368 -13.29891 -13.29054 -12.90225 -12.76710 -12.68817 -12.38266 -12.23516 -12.16680 -12.09729 -11.93159 -11.71620 -11.05947 -10.57634 -10.46436 -10.30739 -9.60166 -9.16174 -8.07916 -6.18793 -0.23532 0.47671 0.92580 1.46330 1.47712 1.55333 1.82294 2.45550 2.94650 3.21234 3.54391 3.93794 4.17257 4.21428 4.32481 4.41381 4.51109 4.57527 4.69018 4.79442 4.83118 4.87622 4.89483 4.97499 5.04188 5.08198 5.20771 5.31357 5.40699 5.41306 5.67384 5.79315 6.23475 6.54198 6.62299 6.86118 6.93070 7.50446 8.97903 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.005346 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.279248 B = 5236.457084 C = 5347.931415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 C 0.164 3.836 4 H 0.043 0.957 5 N -0.671 5.671 6 C 0.221 3.779 7 H 0.011 0.989 8 C -0.157 4.157 9 C -0.512 4.512 10 H 0.059 0.941 11 C 0.010 3.990 12 N -0.923 5.923 13 Si 0.961 3.039 14 H -0.272 1.272 15 H -0.287 1.287 16 H -0.272 1.272 17 C 0.039 3.961 18 N -0.497 5.497 19 C 0.041 3.959 20 C -0.073 4.073 21 C -0.268 4.268 22 S 0.166 5.834 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.329 0.671 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.017 0.983 32 H 0.261 0.739 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.332 3.092 -14.836 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.141 4.141 3 C 0.051 3.949 4 H 0.061 0.939 5 N -0.301 5.301 6 C 0.112 3.888 7 H 0.029 0.971 8 C -0.217 4.217 9 C -0.550 4.550 10 H 0.077 0.923 11 C -0.188 4.188 12 N -0.563 5.563 13 Si 0.787 3.213 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.238 4.238 18 N -0.214 5.214 19 C -0.090 4.090 20 C -0.132 4.132 21 C -0.407 4.407 22 S 0.421 5.579 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.147 0.853 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.715 1.917 -14.604 17.115 hybrid contribution 0.051 1.238 0.816 1.483 sum -8.664 3.154 -13.789 16.587 Atomic orbital electron populations 1.21652 0.94287 1.02238 1.01259 1.21484 0.96081 0.93798 1.02698 1.20060 0.89832 0.95601 0.89435 0.93868 1.60988 1.05182 1.47143 1.16836 1.18970 0.95091 0.91920 0.82781 0.97120 1.22265 0.96876 0.98739 1.03776 1.21349 1.02323 1.38623 0.92738 0.92317 1.25698 1.01364 0.96274 0.95465 1.70005 1.39593 1.48311 0.98383 0.85565 0.79978 0.79087 0.76681 1.19728 1.21217 1.19759 1.26956 0.97049 0.98942 1.00888 1.66168 1.18278 1.11088 1.25825 1.20827 1.00603 1.00994 0.86625 1.20418 0.94750 0.95129 1.02923 1.27312 1.01971 1.05211 1.06242 1.84076 1.34144 1.39075 1.00641 0.93354 0.93386 0.90804 0.91060 0.92185 0.85329 0.91547 0.95039 0.96444 0.93017 0.89677 0.91607 0.88415 0.77560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.64 71.98 0.69 -3.26 16 2 C -0.10 -3.48 5.62 30.59 0.17 -3.31 16 3 C 0.16 6.17 2.40 44.17 0.11 6.28 16 4 H 0.04 1.83 7.22 -2.38 -0.02 1.81 16 5 N -0.67 -28.46 5.87 -477.14 -2.80 -31.26 16 6 C 0.22 11.16 2.36 44.17 0.10 11.27 16 7 H 0.01 0.61 7.19 -2.39 -0.02 0.59 16 8 C -0.16 -7.79 8.92 71.98 0.64 -7.15 16 9 C -0.51 -28.08 8.84 25.60 0.23 -27.86 16 10 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 11 C 0.01 0.56 5.30 84.65 0.45 1.01 16 12 N -0.92 -53.08 11.32 21.45 0.24 -52.84 16 13 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 C 0.04 1.29 5.09 88.52 0.45 1.74 16 18 N -0.50 -16.20 10.53 -179.40 -1.89 -18.09 16 19 C 0.04 1.06 6.74 41.52 0.28 1.34 16 20 C -0.07 -1.30 10.31 71.24 0.73 -0.57 16 21 C -0.27 -5.94 11.13 66.78 0.74 -5.20 16 22 S 0.17 4.48 22.84 -56.49 -1.29 3.19 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.37 7.58 -2.38 -0.02 1.35 16 25 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.06 2.31 7.49 -2.39 -0.02 2.29 16 28 H 0.33 13.60 7.93 -89.69 -0.71 12.89 16 29 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 30 H 0.03 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.02 0.78 7.55 -2.39 -0.02 0.76 16 32 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.20 8.12 -2.39 -0.02 1.18 16 36 H 0.21 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -61.35 309.93 1.25 -60.11 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.35 Total: 18.87 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 4.60 Total: -25.70 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -4.44 Total: -102.19 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.29 Total: 3.19 kcal Total: -61.35 1.25 -60.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407271.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.419 kcal (2) G-P(sol) polarization free energy of solvation -61.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds