Wall clock time and date at job start Mon Mar 30 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.97166 * 2 1 4 4 C 1.52998 * 109.47178 * 56.48031 * 3 2 1 5 5 C 1.53006 * 109.47382 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47260 * 179.97438 * 5 4 3 7 7 O 1.20827 * 120.00312 * 359.72004 * 6 5 4 8 8 O 1.34227 * 119.99815 * 179.97438 * 6 5 4 9 9 C 1.51449 * 109.98253 * 121.27233 * 2 1 3 10 10 O 1.20756 * 126.34380 * 299.00356 * 9 2 1 11 11 C 1.51849 * 107.31558 * 119.03428 * 9 2 1 12 12 C 1.54879 * 104.43435 * 23.78540 * 11 9 2 13 13 C 1.54284 * 109.98197 * 238.72868 * 2 1 3 14 14 H 1.09001 * 110.56918 * 336.05194 * 13 2 1 15 15 C 1.50703 * 110.56771 * 98.92252 * 13 2 1 16 16 H 1.08002 * 119.99804 * 65.20716 * 15 13 2 17 17 C 1.37872 * 119.99565 * 245.20851 * 15 13 2 18 18 N 1.31511 * 120.00488 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99622 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47257 * 59.99916 * 19 17 15 21 21 H 1.48498 * 109.47214 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47196 * 299.99699 * 19 17 15 23 23 H 1.08994 * 109.47221 * 60.70439 * 1 2 3 24 24 H 1.09003 * 109.47184 * 180.70294 * 1 2 3 25 25 H 1.09000 * 109.47244 * 300.69720 * 1 2 3 26 26 H 1.09001 * 109.47229 * 296.48156 * 3 2 1 27 27 H 1.09000 * 109.47339 * 176.47790 * 3 2 1 28 28 H 1.08996 * 109.47576 * 59.99677 * 4 3 2 29 29 H 1.09011 * 109.47111 * 299.99788 * 4 3 2 30 30 H 1.08996 * 109.47357 * 59.99141 * 5 4 3 31 31 H 1.08998 * 109.46218 * 299.99902 * 5 4 3 32 32 H 0.96701 * 116.99574 * 180.02562 * 8 6 5 33 33 H 1.08999 * 110.44136 * 142.52762 * 11 9 2 34 34 H 1.09002 * 110.43690 * 264.91983 * 11 9 2 35 35 H 1.09001 * 110.83454 * 80.59169 * 12 11 9 36 36 H 1.09001 * 110.83262 * 203.97121 * 12 11 9 37 37 H 0.97001 * 120.00287 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0526 1.4379 0.0000 4 6 1.4781 2.1893 1.2026 5 6 2.0002 3.6276 1.2023 6 6 1.4338 4.3678 2.3864 7 8 0.6851 3.8046 3.1493 8 8 1.7572 5.6544 2.5908 9 6 2.0476 -0.7389 1.2165 10 8 1.8489 -0.4446 2.3707 11 6 2.8632 -1.9179 0.7161 12 6 3.3062 -1.5037 -0.7090 13 6 2.0573 -0.7527 -1.2393 14 1 1.3116 -1.4590 -1.6043 15 6 2.4438 0.2193 -2.3242 16 1 3.2653 0.9030 -2.1690 17 6 1.7488 0.2355 -3.5148 18 7 0.7482 -0.5968 -3.7036 19 14 2.2284 1.4397 -4.8599 20 1 3.6342 1.1912 -5.2685 21 1 1.3334 1.2564 -6.0306 22 1 2.0992 2.8285 -4.3501 23 1 -0.3633 0.5028 -0.8962 24 1 -0.3634 -1.0276 0.0126 25 1 -0.3634 0.5246 0.8837 26 1 1.7460 1.9359 -0.9198 27 1 3.1407 1.4291 0.0631 28 1 1.7846 1.6914 2.1224 29 1 0.3899 2.1982 1.1395 30 1 1.6934 4.1253 0.2824 31 1 3.0883 3.6190 1.2652 32 1 1.3695 6.0870 3.3639 33 1 3.7327 -2.0773 1.3538 34 1 2.2489 -2.8175 0.6795 35 1 4.1699 -0.8400 -0.6690 36 1 3.5219 -2.3814 -1.3183 37 1 0.2589 -0.5851 -4.5411 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082291104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:45 Heat of formation + Delta-G solvation = -159.451107 kcal Electronic energy + Delta-G solvation = -19589.467950 eV Core-core repulsion = 16523.668908 eV Total energy + Delta-G solvation = -3065.799042 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17040 -39.53960 -36.30263 -36.03201 -33.99624 -32.34945 -30.81541 -27.46669 -26.96544 -24.07931 -23.60329 -21.98558 -20.34174 -19.61013 -18.00987 -17.63772 -16.58300 -16.09825 -15.84316 -15.15782 -14.76341 -14.63341 -14.19277 -13.50453 -13.23985 -12.87656 -12.73530 -12.37350 -11.93905 -11.90147 -11.52705 -11.40612 -11.24233 -11.14279 -11.00705 -10.86218 -10.62521 -10.53045 -10.44488 -10.28663 -10.03026 -9.51146 -9.22209 -8.93400 -8.53398 -8.29956 -6.11057 -4.12161 2.33699 2.64816 3.17661 3.25105 3.31747 3.33560 4.34933 4.94684 5.10146 5.13962 5.29270 5.38689 5.48122 5.74216 5.80113 5.87055 5.96689 6.08006 6.13294 6.22918 6.39448 6.40820 6.52512 6.58488 6.68996 6.78507 6.80845 6.84155 7.00323 7.08642 7.22053 7.38829 7.69597 7.83601 7.99119 8.25872 8.34563 8.96048 9.49794 10.97813 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.007696 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.204679 B = 3637.174276 C = 4764.081103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C -0.077 4.077 4 C -0.127 4.127 5 C -0.111 4.111 6 C 0.475 3.525 7 O -0.514 6.514 8 O -0.524 6.524 9 C 0.372 3.628 10 O -0.465 6.465 11 C -0.187 4.187 12 C -0.115 4.115 13 C 0.046 3.954 14 H 0.078 0.922 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.068 3.932 18 N -0.890 5.890 19 Si 0.886 3.114 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.404 0.596 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 5.438 6.456 8.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.113 4.113 3 C -0.115 4.115 4 C -0.164 4.164 5 C -0.149 4.149 6 C 0.318 3.682 7 O -0.401 6.401 8 O -0.335 6.335 9 C 0.249 3.751 10 O -0.340 6.340 11 C -0.224 4.224 12 C -0.153 4.153 13 C 0.027 3.973 14 H 0.096 0.904 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.134 4.134 18 N -0.527 5.527 19 Si 0.714 3.286 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.201 1.201 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.262 0.738 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.262 5.180 6.775 8.823 hybrid contribution 0.000 0.878 -0.331 0.938 sum 2.261 6.057 6.444 9.129 Atomic orbital electron populations 1.21640 0.93635 1.01009 1.01497 1.22017 0.96591 0.96574 0.96127 1.21367 0.99234 0.93551 0.97329 1.21860 1.01737 0.91451 1.01396 1.21489 1.02603 0.96660 0.94140 1.23914 0.78154 0.79461 0.86715 1.90725 1.34453 1.68188 1.46753 1.84580 1.70510 1.27309 1.51139 1.25484 0.75423 0.84893 0.89318 1.90281 1.52916 1.68227 1.22564 1.22951 1.00374 0.98796 1.00321 1.22666 1.00766 1.00072 0.91825 1.19798 0.92851 0.94803 0.89798 0.90402 1.20939 1.15877 1.18823 0.98536 0.92422 1.24974 0.94811 0.95377 0.98254 1.69874 1.20595 1.36663 1.25591 0.86756 0.78468 0.81775 0.81610 1.20255 1.21404 1.20128 0.91014 0.93711 0.93840 0.89089 0.92751 0.90291 0.91090 0.87672 0.88014 0.73824 0.90989 0.88984 0.92401 0.92107 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 7.97 37.16 0.30 -2.08 16 2 C -0.11 -2.21 0.59 -154.62 -0.09 -2.30 16 3 C -0.08 -1.42 3.15 -26.74 -0.08 -1.51 16 4 C -0.13 -2.16 3.82 -26.73 -0.10 -2.26 16 5 C -0.11 -1.53 5.81 -27.88 -0.16 -1.69 16 6 C 0.47 6.77 8.33 36.00 0.30 7.07 16 7 O -0.51 -9.12 16.74 -18.75 -0.31 -9.43 16 8 O -0.52 -5.79 13.42 -39.25 -0.53 -6.32 16 9 C 0.37 7.18 6.32 -28.10 -0.18 7.00 16 10 O -0.47 -9.80 15.87 6.00 0.10 -9.71 16 11 C -0.19 -3.20 6.72 -26.33 -0.18 -3.38 16 12 C -0.12 -2.18 6.37 -24.64 -0.16 -2.34 16 13 C 0.05 1.01 2.59 -89.99 -0.23 0.78 16 14 H 0.08 1.91 6.75 -51.93 -0.35 1.56 16 15 C -0.50 -12.01 6.27 -34.44 -0.22 -12.22 16 16 H 0.06 1.35 7.27 -52.49 -0.38 0.97 16 17 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -23.56 12.66 55.43 0.70 -22.86 16 19 Si 0.89 19.61 29.54 -169.99 -5.02 14.58 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.81 6.38 -51.93 -0.33 0.48 16 26 H 0.09 1.78 6.85 -51.93 -0.36 1.42 16 27 H 0.05 0.97 8.03 -51.93 -0.42 0.55 16 28 H 0.08 1.50 5.94 -51.93 -0.31 1.19 16 29 H 0.07 1.27 6.35 -51.92 -0.33 0.94 16 30 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.40 2.71 9.10 45.56 0.41 3.13 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 302.97 15.07 4.57 4.57 Total: -1.00 -28.95 302.97 -5.97 -34.92 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.57 Total: 5.56 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.90 Total: -11.32 kcal Atomic # 7 Polarization: -23.56 SS G_CDS: 0.70 Total: -22.86 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.75 Total: -25.46 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.95 -5.97 -34.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082291104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.526 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds