Wall clock time and date at job start Mon Mar 30 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.96669 * 2 1 4 4 C 1.53002 * 109.47350 * 300.70245 * 3 2 1 5 5 C 1.53004 * 109.46727 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.46732 * 180.02562 * 5 4 3 7 7 O 1.20822 * 120.00100 * 0.02562 * 6 5 4 8 8 O 1.34227 * 119.99502 * 180.02562 * 6 5 4 9 9 C 1.51449 * 109.98480 * 238.73412 * 2 1 3 10 10 O 1.20763 * 126.33863 * 60.22661 * 9 2 1 11 11 C 1.51838 * 107.31871 * 240.25116 * 9 2 1 12 12 C 1.54894 * 104.43283 * 23.78841 * 11 9 2 13 13 C 1.54278 * 109.98837 * 121.27315 * 2 1 3 14 14 H 1.08993 * 110.56886 * 214.83290 * 13 2 1 15 15 C 1.50699 * 110.56874 * 337.70438 * 13 2 1 16 16 H 1.08008 * 119.99978 * 5.28699 * 15 13 2 17 17 C 1.37879 * 119.99777 * 185.29715 * 15 13 2 18 18 N 1.31509 * 119.99973 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99678 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46995 * 89.99945 * 19 17 15 21 21 H 1.48502 * 109.46860 * 209.99903 * 19 17 15 22 22 H 1.48496 * 109.47072 * 330.00010 * 19 17 15 23 23 H 1.08996 * 109.47676 * 67.79561 * 1 2 3 24 24 H 1.09008 * 109.46570 * 187.79269 * 1 2 3 25 25 H 1.08993 * 109.47303 * 307.78519 * 1 2 3 26 26 H 1.09000 * 109.47022 * 60.70832 * 3 2 1 27 27 H 1.09004 * 109.46792 * 180.70081 * 3 2 1 28 28 H 1.08998 * 109.46851 * 299.99988 * 4 3 2 29 29 H 1.08994 * 109.46764 * 60.00170 * 4 3 2 30 30 H 1.09000 * 109.47438 * 300.00460 * 5 4 3 31 31 H 1.09004 * 109.47380 * 60.00475 * 5 4 3 32 32 H 0.96705 * 116.99338 * 179.97438 * 8 6 5 33 33 H 1.08995 * 110.44247 * 142.52825 * 11 9 2 34 34 H 1.08999 * 110.44132 * 264.92639 * 11 9 2 35 35 H 1.09001 * 110.83177 * 80.58562 * 12 11 9 36 36 H 1.09003 * 110.83175 * 204.16260 * 12 11 9 37 37 H 0.97002 * 119.99575 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0524 1.4380 0.0000 4 6 1.5344 2.1689 -1.2403 5 6 2.0564 3.6072 -1.2398 6 6 1.5456 4.3273 -2.4612 7 8 0.8365 3.7496 -3.2507 8 8 1.8785 5.6104 -2.6719 9 6 2.0476 -0.7387 -1.2166 10 8 1.8382 -0.4517 -2.3708 11 6 2.8780 -1.9073 -0.7164 12 6 2.3382 -2.1824 0.7091 13 6 2.0574 -0.7526 1.2392 14 1 2.9754 -0.2926 1.6046 15 6 1.0115 -0.7851 2.3237 16 1 0.0234 -0.3929 2.1330 17 6 1.3162 -1.3153 3.5595 18 7 2.5192 -1.7931 3.7916 19 14 0.0200 -1.3548 4.9041 20 1 -0.7402 -2.6277 4.8215 21 1 0.6800 -1.2576 6.2308 22 1 -0.9101 -0.2105 4.7288 23 1 -0.3634 0.3883 -0.9514 24 1 -0.3633 -1.0183 0.1394 25 1 -0.3633 0.6296 0.8121 26 1 1.7039 1.9512 0.8963 27 1 3.1424 1.4286 -0.0126 28 1 1.8830 1.6557 -2.1365 29 1 0.4446 2.1783 -1.2276 30 1 1.7075 4.1201 -0.3436 31 1 3.1463 3.5982 -1.2522 32 1 1.5271 6.0299 -3.4693 33 1 2.7312 -2.7791 -1.3539 34 1 3.9332 -1.6366 -0.6802 35 1 1.4197 -2.7679 0.6695 36 1 3.0912 -2.6813 1.3192 37 1 2.7334 -2.1664 4.6609 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082291106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:47 Heat of formation + Delta-G solvation = -173.634742 kcal Electronic energy + Delta-G solvation = -19398.811504 eV Core-core repulsion = 16332.397414 eV Total energy + Delta-G solvation = -3066.414090 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43429 -41.00793 -37.87668 -37.15169 -35.58630 -34.06722 -32.28716 -29.23339 -28.15679 -25.85842 -25.35248 -23.23314 -21.83377 -21.09649 -19.31167 -18.90542 -18.00210 -17.46581 -17.29243 -16.77939 -16.46442 -16.21462 -15.46099 -15.22761 -14.58983 -14.43818 -14.16140 -13.81390 -13.56057 -13.47052 -13.09285 -12.85942 -12.65445 -12.56454 -12.51194 -12.47136 -12.25541 -12.02457 -11.83940 -11.61851 -11.61595 -11.31827 -10.81185 -10.64580 -10.37078 -9.94072 -8.02688 -6.07511 1.07031 1.25414 1.46885 1.50866 1.57396 2.19996 2.51464 3.30069 3.38615 3.79492 3.94095 4.04938 4.17749 4.29668 4.39917 4.47514 4.55536 4.66382 4.73156 4.80445 4.85181 4.95522 5.01131 5.14462 5.19137 5.26333 5.31296 5.41465 5.49452 5.54457 5.67198 5.72554 5.89973 6.02460 6.46991 6.68612 7.01227 7.03852 7.59519 9.06884 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.024091 B = 0.005858 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.993669 B = 4778.726715 C = 5448.230973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.113 4.113 3 C -0.089 4.089 4 C -0.113 4.113 5 C -0.110 4.110 6 C 0.482 3.518 7 O -0.557 6.557 8 O -0.512 6.512 9 C 0.379 3.621 10 O -0.478 6.478 11 C -0.179 4.179 12 C -0.097 4.097 13 C 0.061 3.939 14 H 0.025 0.975 15 C -0.518 4.518 16 H 0.073 0.927 17 C 0.018 3.982 18 N -0.920 5.920 19 Si 0.939 3.061 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.267 1.267 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.425 0.575 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 9.502 -7.353 12.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.114 4.114 3 C -0.126 4.126 4 C -0.151 4.151 5 C -0.147 4.147 6 C 0.327 3.673 7 O -0.448 6.448 8 O -0.326 6.326 9 C 0.257 3.743 10 O -0.354 6.354 11 C -0.217 4.217 12 C -0.135 4.135 13 C 0.042 3.958 14 H 0.043 0.957 15 C -0.556 4.556 16 H 0.091 0.909 17 C -0.181 4.181 18 N -0.560 5.560 19 Si 0.767 3.233 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.192 1.192 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.286 0.714 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.822 9.251 -7.676 12.049 hybrid contribution -0.792 -0.231 0.459 0.944 sum 0.030 9.020 -7.217 11.552 Atomic orbital electron populations 1.21612 0.92999 1.01681 1.00356 1.21796 0.97566 0.96783 0.95250 1.21424 1.00483 0.92627 0.98061 1.21549 1.01233 0.93518 0.98801 1.21460 1.04346 0.94646 0.94247 1.23907 0.76251 0.79959 0.87232 1.90734 1.37553 1.68285 1.48217 1.84516 1.71547 1.26340 1.50191 1.25417 0.75767 0.84456 0.88681 1.90298 1.53935 1.68333 1.22847 1.22944 1.01336 0.98246 0.99130 1.22321 0.99089 1.00001 0.92131 1.19412 0.95521 0.90885 0.89974 0.95704 1.21720 0.98860 1.38649 0.96377 0.90908 1.25603 0.96519 0.95588 1.00341 1.70052 1.20779 1.41830 1.23297 0.85841 0.79941 0.78360 0.79186 1.20949 1.21730 1.19153 0.93831 0.93466 0.91213 0.90096 0.91319 0.92095 0.92101 0.85389 0.85756 0.71380 0.89159 0.87211 0.93690 0.92628 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.03 6.50 71.98 0.47 -3.57 16 2 C -0.11 -4.19 0.59 -52.26 -0.03 -4.22 16 3 C -0.09 -2.78 4.15 30.59 0.13 -2.66 16 4 C -0.11 -3.34 3.84 30.60 0.12 -3.23 16 5 C -0.11 -2.38 5.81 29.85 0.17 -2.20 16 6 C 0.48 11.61 8.33 71.24 0.59 12.20 16 7 O -0.56 -18.18 16.74 21.98 0.37 -17.82 16 8 O -0.51 -8.78 13.42 -51.39 -0.69 -9.47 16 9 C 0.38 14.03 6.28 29.70 0.19 14.21 16 10 O -0.48 -19.28 15.77 -1.46 -0.02 -19.31 16 11 C -0.18 -6.17 6.72 30.86 0.21 -5.96 16 12 C -0.10 -4.05 6.00 31.94 0.19 -3.86 16 13 C 0.06 2.65 2.11 -10.41 -0.02 2.63 16 14 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 15 C -0.52 -25.18 7.71 25.60 0.20 -24.98 16 16 H 0.07 3.43 5.09 -2.91 -0.01 3.42 16 17 C 0.02 0.93 5.39 84.66 0.46 1.38 16 18 N -0.92 -49.64 12.80 21.45 0.27 -49.37 16 19 Si 0.94 41.06 29.54 68.60 2.03 43.08 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 23 H 0.04 1.53 6.91 -2.39 -0.02 1.51 16 24 H 0.05 1.82 7.77 -2.38 -0.02 1.80 16 25 H 0.07 2.53 6.72 -2.39 -0.02 2.52 16 26 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 2.10 5.85 -2.39 -0.01 2.09 16 29 H 0.06 1.93 6.60 -2.39 -0.02 1.92 16 30 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.42 3.77 9.10 -74.05 -0.67 3.09 16 33 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.04 1.94 8.05 -2.39 -0.02 1.92 16 36 H 0.05 2.51 7.93 -2.39 -0.02 2.49 16 37 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -62.81 302.05 5.03 -57.78 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.41 Total: 15.33 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 2.67 Total: -20.24 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.27 Total: -49.37 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -0.35 Total: -46.59 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -62.81 5.03 -57.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082291106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.855 kcal (2) G-P(sol) polarization free energy of solvation -62.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds