Wall clock time and date at job start Mon Mar 30 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46888 * 2 1 4 4 C 1.46907 * 110.99968 * 297.02035 * 3 2 1 5 5 C 1.52995 * 109.47038 * 288.24929 * 4 3 2 6 6 C 1.46894 * 111.00247 * 60.97395 * 3 2 1 7 7 C 1.53004 * 109.47191 * 66.04869 * 6 3 2 8 8 C 1.50698 * 109.47290 * 179.97438 * 7 6 3 9 9 N 1.29520 * 124.55900 * 89.69968 * 8 7 6 10 10 C 1.30679 * 117.63320 * 179.76448 * 9 8 7 11 11 C 1.38586 * 113.54594 * 0.51326 * 10 9 8 12 12 C 1.40036 * 126.25247 * 179.77256 * 11 10 9 13 13 H 1.08007 * 119.99896 * 179.97438 * 12 11 10 14 14 C 1.40071 * 120.00513 * 359.95392 * 12 11 10 15 15 N 1.30867 * 119.99717 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00412 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46841 * 90.00153 * 16 14 12 18 18 H 1.48500 * 109.46791 * 209.99776 * 16 14 12 19 19 H 1.48497 * 109.47062 * 330.00448 * 16 14 12 20 20 S 1.70875 * 124.56452 * 269.99882 * 8 7 6 21 21 H 1.08999 * 109.47380 * 61.31728 * 1 2 3 22 22 H 1.08998 * 109.47005 * 181.31589 * 1 2 3 23 23 H 1.09005 * 109.46734 * 301.31320 * 1 2 3 24 24 H 1.08999 * 109.47203 * 240.00373 * 2 1 3 25 25 H 1.08994 * 109.47124 * 119.99751 * 2 1 3 26 26 H 1.09006 * 109.46951 * 48.24850 * 4 3 2 27 27 H 1.08999 * 109.46953 * 168.24860 * 4 3 2 28 28 H 1.09003 * 109.47413 * 179.84427 * 5 4 3 29 29 H 1.08999 * 109.47600 * 299.85028 * 5 4 3 30 30 H 1.09007 * 109.46961 * 59.85135 * 5 4 3 31 31 H 1.09004 * 109.47148 * 186.04593 * 6 3 2 32 32 H 1.08995 * 109.47203 * 306.04810 * 6 3 2 33 33 H 1.09004 * 109.46849 * 299.99907 * 7 6 3 34 34 H 1.09004 * 109.47250 * 59.99806 * 7 6 3 35 35 H 1.08001 * 123.22734 * 180.29060 * 10 9 8 36 36 H 0.96992 * 120.00119 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6077 2.0890 -1.2218 5 6 2.4054 1.5536 -2.4125 6 6 1.5678 2.1032 1.1991 7 6 2.2195 1.4868 2.4386 8 6 1.7564 2.2239 3.6687 9 7 0.7072 1.9117 4.3609 10 6 0.4329 2.6426 5.4089 11 6 1.3324 3.6768 5.6134 12 6 1.2893 4.6192 6.6483 13 1 2.0469 5.3864 6.7119 14 6 0.2636 4.5673 7.6008 15 7 -0.6542 3.6376 7.5239 16 14 0.2059 5.8249 8.9809 17 1 -0.5939 6.9987 8.5477 18 1 -0.4209 5.2144 10.1808 19 1 1.5863 6.2611 9.3111 20 16 2.5408 3.5886 4.3339 21 1 -0.3634 0.4932 -0.9015 22 1 -0.3633 -1.0274 0.0236 23 1 -0.3633 0.5341 0.8780 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.5438 1.9256 -1.3941 27 1 1.7975 3.1563 -1.1077 28 1 2.0977 2.0740 -3.3195 29 1 3.4690 1.7194 -2.2414 30 1 2.2176 0.4857 -2.5249 31 1 1.8523 3.1526 1.1229 32 1 0.4838 2.0257 1.2821 33 1 1.9349 0.4373 2.5148 34 1 3.3036 1.5642 2.3557 35 1 -0.4156 2.4604 6.0518 36 1 -1.3643 3.6014 8.1836 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082418232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:03 Heat of formation + Delta-G solvation = 18.713964 kcal Electronic energy + Delta-G solvation = -16382.598287 eV Core-core repulsion = 13799.570685 eV Total energy + Delta-G solvation = -2583.027602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.42716 -37.37268 -34.26573 -32.28129 -31.03726 -29.32229 -27.99100 -24.83884 -24.05952 -22.95985 -21.34340 -19.49145 -19.00665 -16.83862 -16.47974 -15.88880 -15.64601 -14.87486 -14.19121 -13.79396 -13.59340 -13.09086 -12.76394 -12.60774 -12.50145 -12.06906 -11.94219 -11.82163 -11.52620 -11.39419 -11.33068 -11.14486 -10.97803 -10.85947 -10.62810 -10.32745 -10.05151 -9.72302 -9.57280 -8.04889 -7.96463 -7.90972 -7.17990 -6.97669 -4.57634 2.41118 2.88957 2.94211 3.01863 3.23007 3.63867 3.74212 4.12791 4.42974 5.01348 5.08579 5.17744 5.30026 5.41254 5.52714 5.61194 5.62220 5.71101 5.86003 5.92872 6.03816 6.06320 6.11111 6.20840 6.30178 6.41314 6.58262 6.67632 6.74285 7.17233 7.33287 7.34123 7.46347 7.79061 8.14530 8.36103 8.65904 9.82150 9.83530 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.046085 B = 0.004352 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.425439 B = 6432.966965 C = 6696.734469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 N -0.538 5.538 4 C 0.044 3.956 5 C -0.145 4.145 6 C 0.059 3.941 7 C 0.001 3.999 8 C -0.128 4.128 9 N -0.424 5.424 10 C -0.142 4.142 11 C 0.014 3.986 12 C -0.376 4.376 13 H 0.087 0.913 14 C 0.064 3.936 15 N -0.767 5.767 16 Si 0.935 3.065 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.258 1.258 20 S -0.059 6.059 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.195 0.805 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -1.683 -9.400 9.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.081 4.081 3 N -0.262 5.262 4 C -0.084 4.084 5 C -0.202 4.202 6 C -0.069 4.069 7 C -0.040 4.040 8 C -0.397 4.397 9 N -0.136 5.136 10 C -0.296 4.296 11 C -0.107 4.107 12 C -0.413 4.413 13 H 0.105 0.895 14 C -0.159 4.159 15 N -0.391 5.391 16 Si 0.758 3.242 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.182 1.182 20 S 0.190 5.810 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.211 0.789 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.723 -1.785 -9.854 10.378 hybrid contribution -1.743 0.427 1.163 2.138 sum 0.980 -1.359 -8.691 8.851 Atomic orbital electron populations 1.22427 0.98507 1.02159 1.02278 1.22178 0.92864 0.90659 1.02427 1.62300 1.59510 1.02299 1.02060 1.22114 0.97481 0.98487 0.90363 1.21756 1.01043 1.00805 0.96621 1.22241 0.98249 0.97666 0.88736 1.19512 0.98747 0.97596 0.88149 1.24946 1.02219 1.05382 1.07142 1.65414 1.14193 1.28456 1.05566 1.23105 1.07517 0.98596 1.00415 1.23321 0.93746 0.98437 0.95240 1.19041 1.07950 1.09421 1.04905 0.89511 1.26128 0.94028 0.96571 0.99139 1.69477 1.09634 1.27947 1.32065 0.85854 0.80025 0.79704 0.78651 1.18935 1.19636 1.18155 1.82986 1.35574 1.34521 1.27925 0.92887 0.92398 0.91512 0.91197 0.90325 0.94540 0.91165 0.92824 0.92018 0.92923 0.91228 0.94094 0.91627 0.91692 0.78903 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.55 9.28 37.16 0.34 -2.20 16 2 C 0.05 0.62 5.70 -3.82 -0.02 0.60 16 3 N -0.54 -7.84 4.67 -234.63 -1.10 -8.94 16 4 C 0.04 0.55 5.56 -3.82 -0.02 0.52 16 5 C -0.14 -1.50 9.96 37.15 0.37 -1.13 16 6 C 0.06 1.03 4.71 -3.83 -0.02 1.02 16 7 C 0.00 0.03 5.71 -27.88 -0.16 -0.13 16 8 C -0.13 -3.08 6.61 -13.25 -0.09 -3.17 16 9 N -0.42 -11.38 10.48 -10.84 -0.11 -11.49 16 10 C -0.14 -3.99 10.55 -17.91 -0.19 -4.17 16 11 C 0.01 0.38 6.30 -38.78 -0.24 0.13 16 12 C -0.38 -9.61 9.42 -38.22 -0.36 -9.97 16 13 H 0.09 2.08 7.85 -52.48 -0.41 1.67 16 14 C 0.06 1.51 5.50 -17.28 -0.09 1.42 16 15 N -0.77 -18.81 10.18 55.56 0.57 -18.24 16 16 Si 0.93 17.39 29.56 -169.99 -5.03 12.36 16 17 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 18 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 20 S -0.06 -1.43 23.13 -107.50 -2.49 -3.92 16 21 H 0.05 0.64 6.30 -51.93 -0.33 0.32 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.04 6.23 -51.93 -0.32 0.71 16 24 H 0.07 0.81 6.58 -51.93 -0.34 0.47 16 25 H 0.08 1.09 6.43 -51.93 -0.33 0.76 16 26 H 0.04 0.45 5.91 -51.93 -0.31 0.15 16 27 H 0.07 0.89 7.81 -51.93 -0.41 0.48 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.52 6.70 -51.93 -0.35 0.18 16 31 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 32 H 0.04 0.77 6.00 -51.93 -0.31 0.46 16 33 H 0.07 1.26 6.53 -51.93 -0.34 0.92 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.20 5.55 5.36 -52.49 -0.28 5.27 16 36 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -27.48 299.07 -9.09 -36.57 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.96 Total: 6.24 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.48 Total: -17.08 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.64 Total: -38.68 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.49 Total: -3.92 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.48 -9.09 -36.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.287 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds