Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46888 * 2 1 4 4 C 1.46907 * 110.99968 * 297.02035 * 3 2 1 5 5 C 1.52995 * 109.47038 * 288.24929 * 4 3 2 6 6 C 1.46894 * 111.00247 * 60.97395 * 3 2 1 7 7 C 1.53004 * 109.47191 * 66.04869 * 6 3 2 8 8 C 1.50698 * 109.47290 * 179.97438 * 7 6 3 9 9 N 1.29520 * 124.55900 * 89.69968 * 8 7 6 10 10 C 1.30679 * 117.63320 * 179.76448 * 9 8 7 11 11 C 1.38586 * 113.54594 * 0.51326 * 10 9 8 12 12 C 1.40036 * 126.25247 * 179.77256 * 11 10 9 13 13 H 1.08007 * 119.99896 * 179.97438 * 12 11 10 14 14 C 1.40071 * 120.00513 * 359.95392 * 12 11 10 15 15 N 1.30867 * 119.99717 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00412 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46841 * 90.00153 * 16 14 12 18 18 H 1.48500 * 109.46791 * 209.99776 * 16 14 12 19 19 H 1.48497 * 109.47062 * 330.00448 * 16 14 12 20 20 S 1.70875 * 124.56452 * 269.99882 * 8 7 6 21 21 H 1.08999 * 109.47380 * 61.31728 * 1 2 3 22 22 H 1.08998 * 109.47005 * 181.31589 * 1 2 3 23 23 H 1.09005 * 109.46734 * 301.31320 * 1 2 3 24 24 H 1.08999 * 109.47203 * 240.00373 * 2 1 3 25 25 H 1.08994 * 109.47124 * 119.99751 * 2 1 3 26 26 H 1.09006 * 109.46951 * 48.24850 * 4 3 2 27 27 H 1.08999 * 109.46953 * 168.24860 * 4 3 2 28 28 H 1.09003 * 109.47413 * 179.84427 * 5 4 3 29 29 H 1.08999 * 109.47600 * 299.85028 * 5 4 3 30 30 H 1.09007 * 109.46961 * 59.85135 * 5 4 3 31 31 H 1.09004 * 109.47148 * 186.04593 * 6 3 2 32 32 H 1.08995 * 109.47203 * 306.04810 * 6 3 2 33 33 H 1.09004 * 109.46849 * 299.99907 * 7 6 3 34 34 H 1.09004 * 109.47250 * 59.99806 * 7 6 3 35 35 H 1.08001 * 123.22734 * 180.29060 * 10 9 8 36 36 H 0.96992 * 120.00119 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6077 2.0890 -1.2218 5 6 2.4054 1.5536 -2.4125 6 6 1.5678 2.1032 1.1991 7 6 2.2195 1.4868 2.4386 8 6 1.7564 2.2239 3.6687 9 7 0.7072 1.9117 4.3609 10 6 0.4329 2.6426 5.4089 11 6 1.3324 3.6768 5.6134 12 6 1.2893 4.6192 6.6483 13 1 2.0469 5.3864 6.7119 14 6 0.2636 4.5673 7.6008 15 7 -0.6542 3.6376 7.5239 16 14 0.2059 5.8249 8.9809 17 1 -0.5939 6.9987 8.5477 18 1 -0.4209 5.2144 10.1808 19 1 1.5863 6.2611 9.3111 20 16 2.5408 3.5886 4.3339 21 1 -0.3634 0.4932 -0.9015 22 1 -0.3633 -1.0274 0.0236 23 1 -0.3633 0.5341 0.8780 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.5438 1.9256 -1.3941 27 1 1.7975 3.1563 -1.1077 28 1 2.0977 2.0740 -3.3195 29 1 3.4690 1.7194 -2.2414 30 1 2.2176 0.4857 -2.5249 31 1 1.8523 3.1526 1.1229 32 1 0.4838 2.0257 1.2821 33 1 1.9349 0.4373 2.5148 34 1 3.3036 1.5642 2.3557 35 1 -0.4156 2.4604 6.0518 36 1 -1.3643 3.6014 8.1836 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082418232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = 2.046735 kcal Electronic energy + Delta-G solvation = -16383.321032 eV Core-core repulsion = 13799.570685 eV Total energy + Delta-G solvation = -2583.750348 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.82382 -39.13326 -36.11936 -33.71865 -32.13702 -31.08718 -29.37572 -26.55450 -25.33340 -24.56821 -22.90109 -21.01328 -20.56681 -18.65091 -18.38907 -17.08675 -16.89334 -16.56815 -15.53602 -15.26437 -15.12539 -14.46419 -14.30621 -14.12538 -13.89651 -13.54798 -13.26361 -13.23395 -13.02249 -13.01245 -12.62375 -12.36967 -12.28424 -12.19752 -11.94839 -11.74156 -11.57368 -11.46318 -11.28255 -9.94723 -9.91473 -9.24982 -9.13357 -8.78624 -6.55242 0.54367 1.22253 1.40983 1.51393 1.57158 1.67149 2.13599 2.48273 2.96701 3.11419 3.93373 4.01949 4.19777 4.29480 4.32829 4.43075 4.43774 4.58258 4.65087 4.68906 4.81325 4.83350 4.87433 5.11325 5.12291 5.13775 5.16244 5.23768 5.29847 5.45804 5.53057 5.80943 6.10627 6.20586 6.22572 6.42493 6.58882 7.81379 8.05846 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.046085 B = 0.004352 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.425439 B = 6432.966965 C = 6696.734469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.046 3.954 3 N -0.539 5.539 4 C 0.040 3.960 5 C -0.137 4.137 6 C 0.074 3.926 7 C 0.006 3.994 8 C -0.122 4.122 9 N -0.449 5.449 10 C -0.184 4.184 11 C -0.017 4.017 12 C -0.400 4.400 13 H 0.098 0.902 14 C 0.023 3.977 15 N -0.794 5.794 16 Si 1.015 2.985 17 H -0.256 1.256 18 H -0.261 1.261 19 H -0.250 1.250 20 S -0.036 6.036 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.179 0.821 36 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -1.127 -9.999 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.082 4.082 3 N -0.263 5.263 4 C -0.088 4.088 5 C -0.195 4.195 6 C -0.055 4.055 7 C -0.035 4.035 8 C -0.393 4.393 9 N -0.161 5.161 10 C -0.336 4.336 11 C -0.139 4.139 12 C -0.436 4.436 13 H 0.116 0.884 14 C -0.197 4.197 15 N -0.418 5.418 16 Si 0.832 3.168 17 H -0.181 1.181 18 H -0.185 1.185 19 H -0.174 1.174 20 S 0.214 5.786 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.054 0.946 24 H 0.113 0.887 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.195 0.805 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.349 -1.251 -10.469 11.062 hybrid contribution -1.940 0.209 1.287 2.337 sum 1.409 -1.042 -9.182 9.348 Atomic orbital electron populations 1.22363 0.98438 1.02729 1.01243 1.22253 0.92879 0.89871 1.03205 1.62304 1.59495 1.02847 1.01632 1.22228 0.98098 0.98320 0.90142 1.21707 1.00360 1.01322 0.96090 1.21935 0.96858 0.97406 0.89341 1.19591 0.99394 0.97319 0.87241 1.25748 1.01056 1.05019 1.07493 1.65408 1.15523 1.29188 1.06002 1.22967 1.08527 1.00388 1.01688 1.23683 0.94682 0.98851 0.96673 1.19490 1.09152 1.09572 1.05386 0.88437 1.27266 0.92759 0.98418 1.01242 1.69532 1.10053 1.29147 1.33041 0.84701 0.80433 0.76673 0.74963 1.18054 1.18499 1.17362 1.82710 1.34624 1.34414 1.26857 0.91891 0.90947 0.94586 0.88715 0.91217 0.94323 0.91521 0.91010 0.92352 0.92250 0.91942 0.95879 0.91330 0.90529 0.80452 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.74 9.28 71.98 0.67 -4.07 16 2 C 0.05 1.13 5.70 86.30 0.49 1.62 16 3 N -0.54 -14.98 4.67 -896.22 -4.18 -19.17 16 4 C 0.04 0.92 5.56 86.30 0.48 1.40 16 5 C -0.14 -2.46 9.96 71.98 0.72 -1.74 16 6 C 0.07 2.55 4.71 86.31 0.41 2.96 16 7 C 0.01 0.23 5.71 29.85 0.17 0.40 16 8 C -0.12 -5.97 6.61 88.45 0.59 -5.39 16 9 N -0.45 -24.89 10.48 -188.22 -1.97 -26.86 16 10 C -0.18 -10.71 10.55 84.95 0.90 -9.81 16 11 C -0.02 -0.97 6.30 22.79 0.14 -0.82 16 12 C -0.40 -20.63 9.42 23.15 0.22 -20.41 16 13 H 0.10 4.65 7.85 -2.91 -0.02 4.63 16 14 C 0.02 1.10 5.50 85.28 0.47 1.57 16 15 N -0.79 -39.57 10.18 21.86 0.22 -39.35 16 16 Si 1.01 34.56 29.56 68.60 2.03 36.59 16 17 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16 18 H -0.26 -8.38 7.11 99.48 0.71 -7.68 16 19 H -0.25 -8.19 7.11 99.48 0.71 -7.48 16 20 S -0.04 -1.74 23.13 -56.49 -1.31 -3.04 16 21 H 0.06 1.43 6.30 -2.39 -0.02 1.42 16 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.04 1.12 6.23 -2.38 -0.01 1.11 16 24 H 0.09 1.91 6.58 -2.39 -0.02 1.89 16 25 H 0.07 1.86 6.43 -2.39 -0.02 1.84 16 26 H 0.04 0.89 5.91 -2.38 -0.01 0.88 16 27 H 0.07 1.59 7.81 -2.39 -0.02 1.58 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 0.99 6.70 -2.38 -0.02 0.97 16 31 H 0.06 2.24 7.86 -2.39 -0.02 2.22 16 32 H 0.02 0.89 6.00 -2.39 -0.01 0.87 16 33 H 0.07 2.64 6.53 -2.39 -0.02 2.62 16 34 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 35 H 0.18 10.75 5.36 -2.91 -0.02 10.73 16 36 H 0.30 13.16 8.30 -92.71 -0.77 12.39 16 Total: -1.00 -60.47 299.07 1.11 -59.36 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 1.08 Total: 26.76 kcal Atomic # 6 Polarization: -39.54 SS G_CDS: 5.24 Total: -34.29 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -5.93 Total: -85.38 kcal Atomic # 14 Polarization: 34.56 SS G_CDS: 2.03 Total: 36.59 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -1.31 Total: -3.04 kcal Total: -60.47 1.11 -59.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.408 kcal (2) G-P(sol) polarization free energy of solvation -60.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds