Wall clock time and date at job start Mon Mar 30 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.47429 * 2 1 4 4 C 1.46895 * 111.00265 * 160.28479 * 3 2 1 5 5 C 1.52995 * 109.47210 * 287.93317 * 4 3 2 6 6 C 1.46897 * 110.99748 * 284.24281 * 3 2 1 7 7 C 1.50700 * 109.47265 * 169.99882 * 6 3 2 8 8 N 1.29524 * 124.55839 * 90.02131 * 7 6 3 9 9 C 1.30683 * 117.62980 * 179.73605 * 8 7 6 10 10 C 1.50692 * 123.22469 * 179.97438 * 9 8 7 11 11 C 1.38587 * 113.55024 * 0.02562 * 9 8 7 12 12 C 1.40042 * 126.25642 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99400 * 359.97438 * 12 11 9 14 14 C 1.40065 * 120.00169 * 179.97438 * 12 11 9 15 15 N 1.30863 * 120.00290 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00081 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46772 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47060 * 120.00142 * 16 14 12 19 19 H 1.48498 * 109.47149 * 240.00234 * 16 14 12 20 20 S 1.70884 * 124.56311 * 269.72307 * 7 6 3 21 21 H 1.09000 * 109.47350 * 185.49600 * 1 2 3 22 22 H 1.09000 * 109.47098 * 305.50152 * 1 2 3 23 23 H 1.08995 * 109.46770 * 65.49424 * 1 2 3 24 24 H 1.09002 * 109.46992 * 239.99441 * 2 1 3 25 25 H 1.09001 * 109.46770 * 119.99572 * 2 1 3 26 26 H 1.09000 * 109.46947 * 47.92984 * 4 3 2 27 27 H 1.09002 * 109.47356 * 167.92773 * 4 3 2 28 28 H 1.09000 * 109.47649 * 59.04034 * 5 4 3 29 29 H 1.09004 * 109.47222 * 179.03710 * 5 4 3 30 30 H 1.08998 * 109.47483 * 299.03760 * 5 4 3 31 31 H 1.09003 * 109.47340 * 49.99982 * 6 3 2 32 32 H 1.09006 * 109.47011 * 289.99891 * 6 3 2 33 33 H 1.09000 * 109.47171 * 90.02353 * 10 9 8 34 34 H 1.08999 * 109.47188 * 210.02389 * 10 9 8 35 35 H 1.09001 * 109.47576 * 330.02304 * 10 9 8 36 36 H 0.96997 * 120.00229 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4124 1.4509 0.4626 5 6 3.4625 1.1873 1.9689 6 6 1.8772 1.9937 -1.3293 7 6 2.1547 3.4721 -1.2372 8 7 3.3230 4.0110 -1.3868 9 6 3.4083 5.3110 -1.2840 10 6 4.7026 6.0679 -1.4348 11 6 2.1947 5.9266 -1.0220 12 6 1.9809 7.3013 -0.8611 13 1 2.8098 7.9893 -0.9391 14 6 0.6924 7.7837 -0.5989 15 7 -0.3117 6.9500 -0.5039 16 14 0.4073 9.6174 -0.3850 17 1 1.6957 10.3398 -0.5377 18 1 -0.5522 10.0925 -1.4140 19 1 -0.1482 9.8776 0.9674 20 16 0.9693 4.6636 -0.9286 21 1 -0.3634 -1.0229 0.0984 22 1 -0.3633 0.5968 0.8366 23 1 -0.3633 0.4262 -0.9351 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.0042 0.6979 -0.0579 27 1 3.8184 2.4406 0.2532 28 1 3.0410 0.2046 2.1800 29 1 4.4976 1.2194 2.3091 30 1 2.8848 1.9502 2.4907 31 1 0.8620 1.8367 -1.6938 32 1 2.5858 1.5332 -2.0177 33 1 4.8436 6.3418 -2.4803 34 1 4.6690 6.9702 -0.8242 35 1 5.5313 5.4394 -1.1089 36 1 -1.2040 7.2841 -0.3220 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082421557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:57 Heat of formation + Delta-G solvation = 10.311299 kcal Electronic energy + Delta-G solvation = -16868.682554 eV Core-core repulsion = 14285.290585 eV Total energy + Delta-G solvation = -2583.391969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.07870 -36.96399 -34.19674 -31.43450 -31.10863 -29.16946 -27.88975 -25.90720 -23.61679 -22.53281 -21.34766 -19.80116 -18.62722 -16.96136 -15.73773 -15.46324 -15.06853 -14.72677 -14.19842 -13.53255 -13.39972 -12.93767 -12.58381 -12.34094 -11.97534 -11.88412 -11.65761 -11.57940 -11.46809 -11.37259 -11.09591 -10.97108 -10.89886 -10.80299 -10.48351 -10.23080 -10.18310 -9.77294 -9.18451 -7.89200 -7.74843 -7.62111 -6.99001 -6.97359 -4.53138 2.50300 2.90916 2.97698 3.04079 3.51729 3.66553 4.08154 4.13483 4.61684 5.04585 5.30473 5.51444 5.56350 5.68909 5.78900 5.86187 5.89835 6.08729 6.14467 6.20061 6.25932 6.34824 6.49823 6.56442 6.64200 6.71376 6.72683 6.77254 6.83050 6.99350 7.37361 7.65267 7.70575 7.78921 7.99118 8.39669 8.40702 9.78662 9.83180 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026688 B = 0.006491 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.894214 B = 4312.679078 C = 4837.875289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.531 5.531 4 C 0.050 3.950 5 C -0.142 4.142 6 C 0.169 3.831 7 C -0.174 4.174 8 N -0.429 5.429 9 C -0.149 4.149 10 C -0.029 4.029 11 C -0.003 4.003 12 C -0.369 4.369 13 H 0.098 0.902 14 C 0.048 3.952 15 N -0.774 5.774 16 Si 0.934 3.066 17 H -0.257 1.257 18 H -0.269 1.269 19 H -0.269 1.269 20 S 0.144 5.856 21 H 0.050 0.950 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.026 0.974 25 H 0.068 0.932 26 H 0.020 0.980 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.035 0.965 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -5.099 1.810 5.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 N -0.257 5.257 4 C -0.078 4.078 5 C -0.200 4.200 6 C 0.039 3.961 7 C -0.443 4.443 8 N -0.143 5.143 9 C -0.285 4.285 10 C -0.089 4.089 11 C -0.127 4.127 12 C -0.406 4.406 13 H 0.116 0.884 14 C -0.173 4.173 15 N -0.401 5.401 16 Si 0.758 3.242 17 H -0.180 1.180 18 H -0.194 1.194 19 H -0.194 1.194 20 S 0.397 5.603 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.113 0.887 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.443 -5.429 2.223 6.042 hybrid contribution 1.076 0.745 -0.546 1.418 sum -0.367 -4.684 1.677 4.989 Atomic orbital electron populations 1.21761 0.95287 1.00596 1.02650 1.22084 0.96019 0.89960 0.99968 1.62093 1.20673 1.15954 1.26984 1.22063 0.88485 1.02618 0.94595 1.21763 1.00612 1.01152 0.96468 1.19981 0.99216 0.88859 0.88041 1.25481 0.94936 0.99223 1.24664 1.65007 1.25790 1.11880 1.11578 1.19865 0.94871 0.88287 1.25457 1.19613 0.92822 0.97326 0.99135 1.23128 0.94140 0.97488 0.97921 1.19200 0.94429 0.91204 1.35779 0.88439 1.26216 0.95497 1.02125 0.93483 1.69014 1.01739 1.37067 1.32240 0.85781 0.79777 0.79765 0.78915 1.18014 1.19429 1.19421 1.83981 1.11027 0.94947 1.70362 0.93100 0.91763 0.92834 0.95565 0.91360 0.96170 0.88747 0.93540 0.93108 0.92082 0.91180 0.95212 0.94635 0.93151 0.94072 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.94 37.16 0.37 -1.61 16 2 C 0.05 0.72 5.55 -3.82 -0.02 0.69 16 3 N -0.53 -9.88 4.38 -236.07 -1.03 -10.91 16 4 C 0.05 0.92 5.55 -3.83 -0.02 0.90 16 5 C -0.14 -2.21 9.99 37.16 0.37 -1.84 16 6 C 0.17 3.45 5.36 -4.98 -0.03 3.43 16 7 C -0.17 -4.24 6.07 -13.25 -0.08 -4.32 16 8 N -0.43 -11.05 9.28 -7.08 -0.07 -11.12 16 9 C -0.15 -3.88 6.90 -82.96 -0.57 -4.45 16 10 C -0.03 -0.65 10.06 36.00 0.36 -0.29 16 11 C 0.00 -0.08 6.25 -38.78 -0.24 -0.32 16 12 C -0.37 -9.27 8.93 -38.22 -0.34 -9.61 16 13 H 0.10 2.31 6.94 -52.49 -0.36 1.95 16 14 C 0.05 1.13 5.50 -17.28 -0.10 1.03 16 15 N -0.77 -18.59 10.76 55.56 0.60 -17.99 16 16 Si 0.93 17.35 29.56 -169.99 -5.03 12.33 16 17 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 18 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 S 0.14 3.65 20.23 -107.50 -2.17 1.47 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.75 6.97 -51.93 -0.36 0.39 16 24 H 0.03 0.38 8.00 -51.93 -0.42 -0.04 16 25 H 0.07 0.93 6.24 -51.93 -0.32 0.61 16 26 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 27 H 0.09 2.06 6.02 -51.93 -0.31 1.75 16 28 H 0.05 0.64 6.52 -51.93 -0.34 0.30 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.35 6.72 -51.93 -0.35 1.00 16 32 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 1.05 7.15 -51.93 -0.37 0.67 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.30 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 303.50 15.07 4.57 4.57 Total: -1.00 -27.51 303.50 -8.77 -36.29 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.35 Total: 1.74 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -0.30 Total: -16.38 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.50 Total: -40.02 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -2.17 Total: 1.47 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.51 -8.77 -36.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082421557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.597 kcal (2) G-P(sol) polarization free energy of solvation -27.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds