Wall clock time and date at job start Mon Mar 30 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.47429 * 2 1 4 4 C 1.46895 * 111.00265 * 160.28479 * 3 2 1 5 5 C 1.52995 * 109.47210 * 287.93317 * 4 3 2 6 6 C 1.46897 * 110.99748 * 284.24281 * 3 2 1 7 7 C 1.50700 * 109.47265 * 169.99882 * 6 3 2 8 8 N 1.29524 * 124.55839 * 90.02131 * 7 6 3 9 9 C 1.30683 * 117.62980 * 179.73605 * 8 7 6 10 10 C 1.50692 * 123.22469 * 179.97438 * 9 8 7 11 11 C 1.38587 * 113.55024 * 0.02562 * 9 8 7 12 12 C 1.40042 * 126.25642 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99400 * 359.97438 * 12 11 9 14 14 C 1.40065 * 120.00169 * 179.97438 * 12 11 9 15 15 N 1.30863 * 120.00290 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00081 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46772 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47060 * 120.00142 * 16 14 12 19 19 H 1.48498 * 109.47149 * 240.00234 * 16 14 12 20 20 S 1.70884 * 124.56311 * 269.72307 * 7 6 3 21 21 H 1.09000 * 109.47350 * 185.49600 * 1 2 3 22 22 H 1.09000 * 109.47098 * 305.50152 * 1 2 3 23 23 H 1.08995 * 109.46770 * 65.49424 * 1 2 3 24 24 H 1.09002 * 109.46992 * 239.99441 * 2 1 3 25 25 H 1.09001 * 109.46770 * 119.99572 * 2 1 3 26 26 H 1.09000 * 109.46947 * 47.92984 * 4 3 2 27 27 H 1.09002 * 109.47356 * 167.92773 * 4 3 2 28 28 H 1.09000 * 109.47649 * 59.04034 * 5 4 3 29 29 H 1.09004 * 109.47222 * 179.03710 * 5 4 3 30 30 H 1.08998 * 109.47483 * 299.03760 * 5 4 3 31 31 H 1.09003 * 109.47340 * 49.99982 * 6 3 2 32 32 H 1.09006 * 109.47011 * 289.99891 * 6 3 2 33 33 H 1.09000 * 109.47171 * 90.02353 * 10 9 8 34 34 H 1.08999 * 109.47188 * 210.02389 * 10 9 8 35 35 H 1.09001 * 109.47576 * 330.02304 * 10 9 8 36 36 H 0.96997 * 120.00229 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4124 1.4509 0.4626 5 6 3.4625 1.1873 1.9689 6 6 1.8772 1.9937 -1.3293 7 6 2.1547 3.4721 -1.2372 8 7 3.3230 4.0110 -1.3868 9 6 3.4083 5.3110 -1.2840 10 6 4.7026 6.0679 -1.4348 11 6 2.1947 5.9266 -1.0220 12 6 1.9809 7.3013 -0.8611 13 1 2.8098 7.9893 -0.9391 14 6 0.6924 7.7837 -0.5989 15 7 -0.3117 6.9500 -0.5039 16 14 0.4073 9.6174 -0.3850 17 1 1.6957 10.3398 -0.5377 18 1 -0.5522 10.0925 -1.4140 19 1 -0.1482 9.8776 0.9674 20 16 0.9693 4.6636 -0.9286 21 1 -0.3634 -1.0229 0.0984 22 1 -0.3633 0.5968 0.8366 23 1 -0.3633 0.4262 -0.9351 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.0042 0.6979 -0.0579 27 1 3.8184 2.4406 0.2532 28 1 3.0410 0.2046 2.1800 29 1 4.4976 1.2194 2.3091 30 1 2.8848 1.9502 2.4907 31 1 0.8620 1.8367 -1.6938 32 1 2.5858 1.5332 -2.0177 33 1 4.8436 6.3418 -2.4803 34 1 4.6690 6.9702 -0.8242 35 1 5.5313 5.4394 -1.1089 36 1 -1.2040 7.2841 -0.3220 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082421557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:57 Heat of formation + Delta-G solvation = -5.898023 kcal Electronic energy + Delta-G solvation = -16869.385443 eV Core-core repulsion = 14285.290585 eV Total energy + Delta-G solvation = -2584.094858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.80854 -38.55438 -36.02464 -32.84015 -32.68387 -30.74049 -29.70689 -27.43519 -25.47521 -23.80726 -23.03446 -21.27281 -20.49946 -18.84023 -17.54558 -17.05533 -16.54536 -16.27808 -15.62859 -15.00665 -14.92492 -14.61156 -14.22129 -13.95072 -13.60210 -13.38734 -13.19160 -13.11912 -12.93311 -12.85155 -12.69236 -12.45691 -12.36781 -12.32480 -11.95718 -11.76675 -11.50842 -11.46049 -11.13935 -9.73718 -9.65522 -9.17083 -8.93621 -8.78709 -6.44078 0.68737 1.38370 1.51254 1.56306 1.59619 2.04173 2.22585 2.34552 3.03430 3.26161 4.00959 4.11841 4.18672 4.31391 4.45730 4.57121 4.61795 4.66288 4.76221 4.79698 4.87841 4.92654 4.97756 5.03207 5.05652 5.12626 5.21063 5.23854 5.33186 5.43271 5.51338 5.86584 6.09293 6.18985 6.36513 6.51186 6.52911 7.89599 8.03946 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026688 B = 0.006491 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.894214 B = 4312.679078 C = 4837.875289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 N -0.544 5.544 4 C 0.051 3.949 5 C -0.133 4.133 6 C 0.175 3.825 7 C -0.173 4.173 8 N -0.444 5.444 9 C -0.184 4.184 10 C -0.022 4.022 11 C -0.033 4.033 12 C -0.391 4.391 13 H 0.105 0.895 14 C 0.011 3.989 15 N -0.797 5.797 16 Si 1.010 2.990 17 H -0.251 1.251 18 H -0.261 1.261 19 H -0.262 1.262 20 S 0.120 5.880 21 H 0.080 0.920 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.086 0.914 26 H 0.030 0.970 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -5.156 2.393 5.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 N -0.270 5.270 4 C -0.077 4.077 5 C -0.190 4.190 6 C 0.045 3.955 7 C -0.443 4.443 8 N -0.158 5.158 9 C -0.318 4.318 10 C -0.082 4.082 11 C -0.157 4.157 12 C -0.428 4.428 13 H 0.123 0.877 14 C -0.208 4.208 15 N -0.424 5.424 16 Si 0.829 3.171 17 H -0.174 1.174 18 H -0.185 1.185 19 H -0.186 1.186 20 S 0.372 5.628 21 H 0.099 0.901 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.104 0.896 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.849 -5.508 2.805 6.452 hybrid contribution 1.164 0.692 -0.721 1.534 sum -0.685 -4.816 2.085 5.292 Atomic orbital electron populations 1.21739 0.94290 1.02204 1.01634 1.22213 0.96784 0.87813 1.01217 1.62066 1.20930 1.18443 1.25536 1.22006 0.88424 1.00630 0.96602 1.21687 1.01575 1.01724 0.94057 1.19938 0.99525 0.86773 0.89307 1.26092 0.94208 1.00770 1.23222 1.65087 1.26307 1.12048 1.12340 1.20453 0.96156 0.88745 1.26460 1.19596 0.91487 0.97300 0.99774 1.23515 0.94627 0.98561 0.98966 1.19562 0.95851 0.90943 1.36432 0.87672 1.27226 0.94444 1.06995 0.92185 1.69049 1.02559 1.39293 1.31491 0.84681 0.79909 0.73345 0.79165 1.17401 1.18520 1.18621 1.83834 1.11879 0.95683 1.71359 0.90085 0.92997 0.93705 0.94687 0.89559 0.95221 0.92732 0.91209 0.91538 0.93896 0.90294 0.95488 0.93871 0.92412 0.93386 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.94 71.98 0.72 -2.84 16 2 C 0.05 1.30 5.55 86.31 0.48 1.78 16 3 N -0.54 -19.86 4.38 -900.80 -3.95 -23.81 16 4 C 0.05 1.86 5.55 86.30 0.48 2.34 16 5 C -0.13 -3.95 9.99 71.98 0.72 -3.23 16 6 C 0.17 7.18 5.36 85.56 0.46 7.64 16 7 C -0.17 -8.60 6.07 88.45 0.54 -8.06 16 8 N -0.44 -23.47 9.28 -176.30 -1.64 -25.11 16 9 C -0.18 -9.77 6.90 42.81 0.30 -9.47 16 10 C -0.02 -0.99 10.06 71.23 0.72 -0.27 16 11 C -0.03 -1.81 6.25 22.79 0.14 -1.66 16 12 C -0.39 -19.81 8.93 23.15 0.21 -19.60 16 13 H 0.11 4.99 6.94 -2.91 -0.02 4.97 16 14 C 0.01 0.49 5.50 85.28 0.47 0.96 16 15 N -0.80 -38.27 10.76 21.86 0.24 -38.03 16 16 Si 1.01 34.41 29.56 68.60 2.03 36.43 16 17 H -0.25 -8.25 7.11 99.48 0.71 -7.54 16 18 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 19 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 20 S 0.12 6.23 20.23 -56.49 -1.14 5.09 16 21 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.19 6.97 -2.39 -0.02 1.18 16 24 H 0.03 0.93 8.00 -2.39 -0.02 0.91 16 25 H 0.09 2.09 6.24 -2.39 -0.01 2.08 16 26 H 0.03 1.00 8.05 -2.39 -0.02 0.98 16 27 H 0.05 2.43 6.02 -2.39 -0.01 2.41 16 28 H 0.07 1.73 6.52 -2.39 -0.02 1.72 16 29 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.08 3.05 6.72 -2.39 -0.02 3.03 16 32 H 0.03 1.11 8.12 -2.38 -0.02 1.09 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.41 7.15 -2.39 -0.02 2.39 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.31 13.05 8.30 -92.71 -0.77 12.28 16 Total: -1.00 -60.01 303.50 1.82 -58.19 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 1.06 Total: 19.66 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 5.22 Total: -32.42 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -5.35 Total: -86.95 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.43 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.14 Total: 5.09 kcal Total: -60.01 1.82 -58.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082421557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.292 kcal (2) G-P(sol) polarization free energy of solvation -60.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds