Wall clock time and date at job start Mon Mar 30 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47047 * 2 1 4 4 C 1.52998 * 109.47001 * 120.00323 * 2 1 3 5 5 C 1.52998 * 109.47162 * 175.00027 * 4 2 1 6 6 H 1.09005 * 109.47257 * 54.99801 * 5 4 2 7 7 C 1.50700 * 109.47367 * 294.99896 * 5 4 2 8 8 H 1.08004 * 120.00487 * 121.26889 * 7 5 4 9 9 C 1.37881 * 119.99645 * 301.27794 * 7 5 4 10 10 N 1.31509 * 120.00190 * 6.14248 * 9 7 5 11 11 Si 1.86802 * 119.99676 * 186.15177 * 9 7 5 12 12 H 1.48493 * 109.47319 * 89.99536 * 11 9 7 13 13 H 1.48508 * 109.46804 * 209.99623 * 11 9 7 14 14 H 1.48503 * 109.47410 * 329.99250 * 11 9 7 15 15 C 1.50696 * 109.47225 * 174.99772 * 5 4 2 16 16 C 1.38264 * 119.96443 * 211.46945 * 15 5 4 17 17 C 1.38210 * 120.06973 * 179.97438 * 16 15 5 18 18 C 1.38416 * 119.99970 * 0.02562 * 17 16 15 19 19 F 1.35098 * 120.03387 * 180.02562 * 18 17 16 20 20 C 1.38641 * 119.93019 * 359.97438 * 18 17 16 21 21 F 1.35103 * 120.03940 * 180.02562 * 20 18 17 22 22 C 1.38211 * 119.96667 * 31.46987 * 15 5 4 23 23 H 1.08992 * 109.47253 * 300.00219 * 1 2 3 24 24 H 1.09006 * 109.47002 * 59.99761 * 1 2 3 25 25 H 1.08998 * 109.47408 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47211 * 240.00119 * 2 1 3 27 27 H 1.09009 * 109.47114 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47487 * 299.99991 * 3 2 1 29 29 H 1.08996 * 109.47087 * 60.00263 * 3 2 1 30 30 H 1.08996 * 109.47062 * 54.99952 * 4 2 1 31 31 H 1.08997 * 109.47241 * 294.99805 * 4 2 1 32 32 H 0.97000 * 120.00059 * 179.97438 * 10 9 7 33 33 H 1.07994 * 119.96311 * 0.27272 * 16 15 5 34 34 H 1.07997 * 120.00208 * 179.97438 * 17 16 15 35 35 H 1.08001 * 119.99787 * 0.02562 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1880 6 1 3.9954 0.1611 1.0527 7 6 3.9590 -1.7118 0.0303 8 1 4.5954 -1.3237 -0.7512 9 6 3.5069 -3.0129 -0.0312 10 7 2.6366 -3.4492 0.8530 11 14 4.1308 -4.1560 -1.3704 12 1 5.3457 -4.8630 -0.8914 13 1 3.0785 -5.1498 -1.7027 14 1 4.4641 -3.3642 -2.5816 15 6 4.0773 -1.4303 2.4722 16 6 5.3203 -1.0667 2.9561 17 6 5.7923 -1.6145 4.1340 18 6 5.0205 -2.5286 4.8302 19 9 5.4809 -3.0641 5.9819 20 6 3.7740 -2.8932 4.3449 21 9 3.0186 -3.7848 5.0229 22 6 3.3042 -2.3428 3.1650 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6053 -1.7198 1.2950 31 1 1.7517 -0.1584 2.1369 32 1 2.3183 -4.3644 0.8095 33 1 5.9211 -0.3503 2.4157 34 1 6.7636 -1.3301 4.5108 35 1 2.3335 -2.6263 2.7857 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084421595.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:23 Heat of formation + Delta-G solvation = -88.411318 kcal Electronic energy + Delta-G solvation = -19224.460640 eV Core-core repulsion = 16050.654600 eV Total energy + Delta-G solvation = -3173.806041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.67067 -47.74727 -38.48746 -36.00468 -33.14512 -30.78157 -29.85251 -27.62056 -26.43453 -25.22206 -22.83643 -22.01618 -20.30894 -18.88257 -17.13471 -16.57245 -16.19367 -15.59680 -15.46845 -14.89340 -14.20872 -14.13259 -13.86284 -13.58008 -13.26342 -13.06095 -12.78178 -12.15060 -12.06759 -11.60696 -11.44945 -11.39062 -11.17978 -10.94243 -10.76204 -10.64109 -10.37083 -10.02178 -9.82445 -9.58106 -9.18746 -9.08770 -8.55952 -8.02572 -7.59521 -6.12070 -4.26811 1.87774 2.02290 3.21705 3.29935 3.31469 4.28436 4.42242 4.69065 5.08910 5.14780 5.46607 5.70380 5.79442 5.81193 5.88109 6.02402 6.21112 6.25209 6.42315 6.47344 6.53407 6.63704 6.72900 6.78305 6.82947 6.88880 6.94012 7.08707 7.23522 7.37196 7.47711 7.57978 7.73552 7.80430 8.02141 8.23191 8.72386 9.39766 10.80898 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.008674 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.353823 B = 3227.331589 C = 3893.792646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.114 4.114 5 C 0.072 3.928 6 H 0.038 0.962 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.878 5.878 11 Si 0.890 3.110 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.011 4.011 16 C -0.116 4.116 17 C -0.145 4.145 18 C 0.024 3.976 19 F -0.150 7.150 20 C 0.044 3.956 21 F -0.145 7.145 22 C -0.082 4.082 23 H 0.041 0.959 24 H 0.038 0.962 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.107 0.893 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 4.838 2.029 5.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.151 4.151 5 C 0.054 3.946 6 H 0.056 0.944 7 C -0.536 4.536 8 H 0.078 0.922 9 C -0.133 4.133 10 N -0.515 5.515 11 Si 0.718 3.282 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 C -0.012 4.012 16 C -0.135 4.135 17 C -0.164 4.164 18 C 0.004 3.996 19 F -0.129 7.129 20 C 0.023 3.977 21 F -0.124 7.124 22 C -0.102 4.102 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.011 4.605 2.120 5.070 hybrid contribution 0.483 -1.173 -0.315 1.307 sum 0.494 3.432 1.804 3.909 Atomic orbital electron populations 1.21826 0.97417 1.00927 0.99742 1.20964 0.93264 0.94852 1.01263 1.21867 1.01328 0.97236 0.99547 1.21827 0.97884 1.02036 0.93373 1.18008 0.93038 0.94452 0.89127 0.94400 1.21029 1.30463 0.96572 1.05565 0.92159 1.24903 0.94468 0.98050 0.95911 1.69587 1.29721 1.17029 1.35158 0.86604 0.78755 0.80748 0.82081 1.20677 1.21143 1.19850 1.20490 0.92299 0.93948 0.94444 1.20916 0.96584 1.00981 0.94983 1.20754 0.99884 0.98653 0.97113 1.17604 0.94291 1.01536 0.86168 1.91406 1.88939 1.85352 1.47171 1.17991 0.89854 0.95061 0.94744 1.91422 1.75405 1.66118 1.79474 1.21727 1.04181 0.94767 0.89483 0.93952 0.94299 0.93040 0.90310 0.92500 0.94475 0.94090 0.87521 0.96307 0.92478 0.85786 0.85567 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.19 37.16 0.34 -1.99 16 2 C -0.09 -1.58 2.81 -90.62 -0.25 -1.83 16 3 C -0.14 -2.32 8.95 37.15 0.33 -1.99 16 4 C -0.11 -2.33 3.19 -26.73 -0.09 -2.41 16 5 C 0.07 1.55 2.19 -92.93 -0.20 1.35 16 6 H 0.04 0.77 6.28 -51.93 -0.33 0.45 16 7 C -0.50 -11.88 7.59 -34.44 -0.26 -12.14 16 8 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 9 C 0.07 1.67 5.14 -17.82 -0.09 1.58 16 10 N -0.88 -21.55 7.75 55.43 0.43 -21.12 16 11 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 C -0.01 -0.23 4.68 -104.62 -0.49 -0.72 16 16 C -0.12 -2.22 9.69 -39.58 -0.38 -2.60 16 17 C -0.14 -2.65 10.02 -39.53 -0.40 -3.04 16 18 C 0.02 0.48 7.31 -39.37 -0.29 0.20 16 19 F -0.15 -2.97 17.18 2.25 0.04 -2.93 16 20 C 0.04 0.94 7.31 -39.37 -0.29 0.65 16 21 F -0.15 -3.15 17.18 2.25 0.04 -3.11 16 22 C -0.08 -1.82 7.53 -39.53 -0.30 -2.12 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.63 7.23 -51.93 -0.38 1.25 16 27 H 0.06 0.95 6.46 -51.92 -0.34 0.61 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.11 2.44 4.65 -51.93 -0.24 2.19 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 33 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 35 H 0.17 3.98 4.97 -52.49 -0.26 3.72 16 LS Contribution 289.27 15.07 4.36 4.36 Total: -1.00 -24.16 289.27 -6.99 -31.14 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.47 Total: 1.93 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -2.36 Total: -25.07 kcal Atomic # 7 Polarization: -21.55 SS G_CDS: 0.43 Total: -21.12 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.08 Total: -6.04 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -24.16 -6.99 -31.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084421595.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.268 kcal (2) G-P(sol) polarization free energy of solvation -24.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds