Wall clock time and date at job start Mon Mar 30 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47022 * 2 1 4 4 H 1.09005 * 109.46711 * 56.79812 * 3 2 1 5 5 C 1.50702 * 109.47226 * 176.79777 * 3 2 1 6 6 H 1.07997 * 119.99980 * 120.00514 * 5 3 2 7 7 C 1.37874 * 120.00052 * 300.00068 * 5 3 2 8 8 N 1.31517 * 120.00279 * 180.02562 * 7 5 3 9 9 Si 1.86808 * 119.99806 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46956 * 89.99854 * 9 7 5 11 11 H 1.48497 * 109.46915 * 209.99715 * 9 7 5 12 12 H 1.48494 * 109.46959 * 329.99884 * 9 7 5 13 13 N 1.46901 * 109.47353 * 296.80032 * 3 2 1 14 14 C 1.46904 * 111.00237 * 168.71688 * 13 3 2 15 15 C 1.46901 * 110.99883 * 292.66862 * 13 3 2 16 16 C 1.50702 * 109.47106 * 162.10493 * 15 13 3 17 17 S 1.76198 * 126.03734 * 269.69320 * 16 15 13 18 18 C 1.70975 * 90.28339 * 179.97438 * 17 16 15 19 19 N 1.29028 * 110.16762 * 0.34850 * 18 17 16 20 20 C 1.31787 * 117.11995 * 359.71967 * 19 18 17 21 21 C 1.50703 * 122.74690 * 179.97438 * 20 19 18 22 22 H 1.09008 * 109.46879 * 175.41426 * 1 2 3 23 23 H 1.09003 * 109.46932 * 295.40802 * 1 2 3 24 24 H 1.08992 * 109.47507 * 55.40884 * 1 2 3 25 25 H 1.09004 * 109.46988 * 240.00364 * 2 1 3 26 26 H 1.08998 * 109.47562 * 120.00052 * 2 1 3 27 27 H 0.96997 * 119.99990 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47049 * 183.95165 * 14 13 3 29 29 H 1.09003 * 109.46925 * 63.95086 * 14 13 3 30 30 H 1.08994 * 109.47003 * 303.95450 * 14 13 3 31 31 H 1.09000 * 109.47092 * 282.10804 * 15 13 3 32 32 H 1.09001 * 109.47012 * 42.10515 * 15 13 3 33 33 H 1.07993 * 124.91964 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47782 * 270.00798 * 21 20 19 35 35 H 1.08999 * 109.46881 * 30.00716 * 21 20 19 36 36 H 1.09005 * 109.46851 * 150.00129 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 0.8600 5 6 3.5449 1.4433 0.0794 6 1 4.1270 1.8961 -0.7096 7 6 4.1786 0.8660 1.1592 8 7 5.4919 0.8671 1.2288 9 14 3.1717 0.0822 2.5236 10 1 2.9417 -1.3507 2.2084 11 1 3.9072 0.1945 3.8087 12 1 1.8657 0.7796 2.6381 13 7 1.6144 2.1123 -1.2362 14 6 1.8494 3.5604 -1.1581 15 6 2.2859 1.5325 -2.4071 16 6 1.5335 1.9117 -3.6566 17 16 0.2235 0.9945 -4.3962 18 6 0.0859 2.1699 -5.6302 19 7 0.9550 3.1066 -5.4512 20 6 1.7466 2.9993 -4.4031 21 6 2.8060 4.0194 -4.0738 22 1 -0.3633 -1.0245 -0.0822 23 1 -0.3633 0.4409 0.9283 24 1 -0.3634 0.5834 -0.8459 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 5.9377 0.4613 1.9887 28 1 1.4617 4.0403 -2.0566 29 1 2.9196 3.7510 -1.0772 30 1 1.3413 3.9641 -0.2824 31 1 3.3054 1.9137 -2.4670 32 1 2.3089 0.4469 -2.3121 33 1 -0.6222 2.1311 -6.4447 34 1 3.7409 3.7427 -4.5612 35 1 2.4883 5.0002 -4.4275 36 1 2.9549 4.0531 -2.9945 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111669017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:16 Heat of formation + Delta-G solvation = 53.846860 kcal Electronic energy + Delta-G solvation = -17457.461265 eV Core-core repulsion = 14875.957140 eV Total energy + Delta-G solvation = -2581.504126 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.72297 -37.56051 -33.42316 -32.00637 -31.20182 -29.06305 -27.32088 -25.31545 -24.63928 -23.17721 -22.01224 -19.47186 -18.49168 -17.81962 -16.78114 -15.51407 -15.27714 -15.07202 -14.24330 -13.84772 -13.37508 -13.31585 -12.95363 -12.63375 -12.41496 -12.14136 -12.10543 -11.84285 -11.67041 -11.45418 -11.25247 -10.91213 -10.60099 -10.44039 -10.20773 -9.76589 -9.62256 -9.38590 -9.32834 -8.95418 -8.63421 -8.43258 -7.31843 -6.18818 -4.20678 0.99995 1.66001 2.06166 3.03349 3.21052 3.32739 3.34164 4.31337 4.45100 4.90253 5.12404 5.30522 5.39267 5.54973 5.81875 5.84407 5.91714 6.00062 6.03337 6.07875 6.18527 6.22988 6.32944 6.42689 6.52933 6.62434 6.66435 6.72357 6.85900 7.02748 7.13497 7.45445 7.93734 7.97745 7.99164 8.36055 8.81424 9.44275 10.93655 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029596 B = 0.007121 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.860149 B = 3931.066089 C = 4462.273049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.181 3.819 4 H 0.042 0.958 5 C -0.550 4.550 6 H 0.077 0.923 7 C 0.076 3.924 8 N -0.895 5.895 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.524 5.524 14 C 0.026 3.974 15 C 0.132 3.868 16 C -0.176 4.176 17 S 0.119 5.881 18 C -0.005 4.005 19 N -0.468 5.468 20 C 0.045 3.955 21 C -0.090 4.090 22 H 0.034 0.966 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.264 0.736 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.192 0.808 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.641 0.986 -8.944 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.060 0.940 5 C -0.588 4.588 6 H 0.095 0.905 7 C -0.127 4.127 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.189 1.189 13 N -0.247 5.247 14 C -0.123 4.123 15 C 0.002 3.998 16 C -0.298 4.298 17 S 0.372 5.628 18 C -0.303 4.303 19 N -0.182 5.182 20 C -0.087 4.087 21 C -0.149 4.149 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.209 0.791 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.523 0.370 -9.079 13.903 hybrid contribution 1.016 0.172 0.985 1.426 sum -9.507 0.542 -8.094 12.498 Atomic orbital electron populations 1.21748 0.97258 0.99643 1.01613 1.21941 0.94190 0.99255 1.00575 1.19777 0.94499 0.90562 0.87833 0.94023 1.21607 0.90211 1.38913 1.08068 0.90504 1.24971 0.94689 0.95255 0.97784 1.69906 1.07903 1.44561 1.30866 0.86865 0.80433 0.79936 0.81115 1.20474 1.22539 1.18864 1.62322 1.56486 1.03092 1.02823 1.22437 0.99905 0.89323 1.00599 1.20376 0.94126 1.00671 0.84656 1.26049 1.01639 0.98586 1.03512 1.83939 1.31898 1.26878 1.20105 1.28087 1.02859 0.95164 1.04166 1.66137 1.05309 1.26883 1.19841 1.20171 0.99581 0.97047 0.91891 1.20656 0.94814 0.95944 1.03488 0.94678 0.94013 0.91741 0.92411 0.93411 0.92564 0.92627 0.94424 0.92433 0.91594 0.89512 0.79147 0.91173 0.91178 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.84 37.16 0.37 -2.21 16 2 C -0.12 -2.53 4.85 -26.73 -0.13 -2.66 16 3 C 0.18 4.01 1.31 -68.86 -0.09 3.92 16 4 H 0.04 0.98 7.05 -51.93 -0.37 0.61 16 5 C -0.55 -14.28 7.84 -34.44 -0.27 -14.55 16 6 H 0.08 2.16 6.27 -52.49 -0.33 1.83 16 7 C 0.08 2.09 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -26.29 13.96 55.43 0.77 -25.52 16 9 Si 0.89 21.23 24.40 -169.99 -4.15 17.08 16 10 H -0.28 -6.53 6.84 56.52 0.39 -6.14 16 11 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.26 -6.07 6.53 56.52 0.37 -5.70 16 13 N -0.52 -10.14 3.93 -237.73 -0.93 -11.08 16 14 C 0.03 0.47 7.72 60.07 0.46 0.93 16 15 C 0.13 2.44 4.19 -4.97 -0.02 2.42 16 16 C -0.18 -2.89 5.71 -35.92 -0.21 -3.10 16 17 S 0.12 1.62 23.22 -107.50 -2.50 -0.87 16 18 C 0.00 -0.06 12.23 51.58 0.63 0.57 16 19 N -0.47 -7.33 10.53 -11.90 -0.13 -7.46 16 20 C 0.04 0.72 6.15 -84.22 -0.52 0.20 16 21 C -0.09 -1.31 9.17 36.01 0.33 -0.98 16 22 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.12 7.57 -51.93 -0.39 0.72 16 25 H 0.06 1.18 6.21 -51.93 -0.32 0.86 16 26 H 0.05 1.06 3.22 -51.93 -0.17 0.89 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.06 0.92 5.47 -51.93 -0.28 0.63 16 29 H 0.04 0.73 6.65 -51.93 -0.35 0.38 16 30 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 31 H 0.07 1.32 6.01 -51.93 -0.31 1.01 16 32 H 0.09 1.67 5.94 -51.93 -0.31 1.36 16 33 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.35 3.96 -51.93 -0.21 1.14 16 LS Contribution 286.29 15.07 4.31 4.31 Total: -1.00 -28.89 286.29 -6.90 -35.79 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.75 Total: 1.20 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 0.46 Total: -13.46 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.29 Total: -44.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.15 Total: 17.08 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.50 Total: -0.87 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.89 -6.90 -35.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111669017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.636 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds