Wall clock time and date at job start Mon Mar 30 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47022 * 2 1 4 4 H 1.09005 * 109.46711 * 56.79812 * 3 2 1 5 5 C 1.50702 * 109.47226 * 176.79777 * 3 2 1 6 6 H 1.07997 * 119.99980 * 120.00514 * 5 3 2 7 7 C 1.37874 * 120.00052 * 300.00068 * 5 3 2 8 8 N 1.31517 * 120.00279 * 180.02562 * 7 5 3 9 9 Si 1.86808 * 119.99806 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46956 * 89.99854 * 9 7 5 11 11 H 1.48497 * 109.46915 * 209.99715 * 9 7 5 12 12 H 1.48494 * 109.46959 * 329.99884 * 9 7 5 13 13 N 1.46901 * 109.47353 * 296.80032 * 3 2 1 14 14 C 1.46904 * 111.00237 * 168.71688 * 13 3 2 15 15 C 1.46901 * 110.99883 * 292.66862 * 13 3 2 16 16 C 1.50702 * 109.47106 * 162.10493 * 15 13 3 17 17 S 1.76198 * 126.03734 * 269.69320 * 16 15 13 18 18 C 1.70975 * 90.28339 * 179.97438 * 17 16 15 19 19 N 1.29028 * 110.16762 * 0.34850 * 18 17 16 20 20 C 1.31787 * 117.11995 * 359.71967 * 19 18 17 21 21 C 1.50703 * 122.74690 * 179.97438 * 20 19 18 22 22 H 1.09008 * 109.46879 * 175.41426 * 1 2 3 23 23 H 1.09003 * 109.46932 * 295.40802 * 1 2 3 24 24 H 1.08992 * 109.47507 * 55.40884 * 1 2 3 25 25 H 1.09004 * 109.46988 * 240.00364 * 2 1 3 26 26 H 1.08998 * 109.47562 * 120.00052 * 2 1 3 27 27 H 0.96997 * 119.99990 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47049 * 183.95165 * 14 13 3 29 29 H 1.09003 * 109.46925 * 63.95086 * 14 13 3 30 30 H 1.08994 * 109.47003 * 303.95450 * 14 13 3 31 31 H 1.09000 * 109.47092 * 282.10804 * 15 13 3 32 32 H 1.09001 * 109.47012 * 42.10515 * 15 13 3 33 33 H 1.07993 * 124.91964 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47782 * 270.00798 * 21 20 19 35 35 H 1.08999 * 109.46881 * 30.00716 * 21 20 19 36 36 H 1.09005 * 109.46851 * 150.00129 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 0.8600 5 6 3.5449 1.4433 0.0794 6 1 4.1270 1.8961 -0.7096 7 6 4.1786 0.8660 1.1592 8 7 5.4919 0.8671 1.2288 9 14 3.1717 0.0822 2.5236 10 1 2.9417 -1.3507 2.2084 11 1 3.9072 0.1945 3.8087 12 1 1.8657 0.7796 2.6381 13 7 1.6144 2.1123 -1.2362 14 6 1.8494 3.5604 -1.1581 15 6 2.2859 1.5325 -2.4071 16 6 1.5335 1.9117 -3.6566 17 16 0.2235 0.9945 -4.3962 18 6 0.0859 2.1699 -5.6302 19 7 0.9550 3.1066 -5.4512 20 6 1.7466 2.9993 -4.4031 21 6 2.8060 4.0194 -4.0738 22 1 -0.3633 -1.0245 -0.0822 23 1 -0.3633 0.4409 0.9283 24 1 -0.3634 0.5834 -0.8459 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 5.9377 0.4613 1.9887 28 1 1.4617 4.0403 -2.0566 29 1 2.9196 3.7510 -1.0772 30 1 1.3413 3.9641 -0.2824 31 1 3.3054 1.9137 -2.4670 32 1 2.3089 0.4469 -2.3121 33 1 -0.6222 2.1311 -6.4447 34 1 3.7409 3.7427 -4.5612 35 1 2.4883 5.0002 -4.4275 36 1 2.9549 4.0531 -2.9945 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111669017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:16 Heat of formation + Delta-G solvation = 34.301835 kcal Electronic energy + Delta-G solvation = -17458.308801 eV Core-core repulsion = 14875.957140 eV Total energy + Delta-G solvation = -2582.351661 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.93686 -39.15563 -35.07661 -33.88978 -32.53384 -30.40195 -29.10191 -26.67135 -25.98980 -24.74734 -23.55636 -21.17171 -19.85794 -19.04535 -18.51973 -17.26264 -16.60646 -16.47569 -15.96914 -15.30412 -14.88617 -14.64650 -14.45904 -14.21633 -13.76030 -13.63809 -13.53804 -13.33501 -13.20714 -12.99265 -12.77446 -12.48789 -12.15998 -11.96937 -11.88507 -11.43667 -11.40476 -11.17796 -10.68375 -10.52815 -10.13613 -9.60837 -8.98402 -8.31203 -6.35695 -0.14340 0.53827 0.92845 1.30498 1.36394 1.45883 1.85834 2.30820 3.04642 3.31414 3.42884 4.03217 4.14529 4.28374 4.38340 4.42994 4.51188 4.60491 4.64801 4.70590 4.80372 4.85670 4.89766 4.97359 5.05737 5.12705 5.15330 5.26033 5.39648 5.43690 5.50203 5.59477 6.12830 6.30718 6.40533 6.71909 6.82577 7.32957 8.84674 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029596 B = 0.007121 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.860149 B = 3931.066089 C = 4462.273049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.185 3.815 4 H 0.035 0.965 5 C -0.540 4.540 6 H 0.042 0.958 7 C 0.020 3.980 8 N -0.945 5.945 9 Si 0.943 3.057 10 H -0.268 1.268 11 H -0.303 1.303 12 H -0.245 1.245 13 N -0.516 5.516 14 C 0.031 3.969 15 C 0.145 3.855 16 C -0.213 4.213 17 S 0.157 5.843 18 C 0.014 3.986 19 N -0.495 5.495 20 C 0.045 3.955 21 C -0.090 4.090 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.264 0.736 28 H 0.074 0.926 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.637 0.466 -9.840 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.076 3.924 4 H 0.053 0.947 5 C -0.579 4.579 6 H 0.060 0.940 7 C -0.178 4.178 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.231 1.231 12 H -0.169 1.169 13 N -0.238 5.238 14 C -0.117 4.117 15 C 0.015 3.985 16 C -0.335 4.335 17 S 0.410 5.590 18 C -0.283 4.283 19 N -0.209 5.209 20 C -0.087 4.087 21 C -0.149 4.149 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.250 0.750 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.546 -0.151 -9.990 16.832 hybrid contribution 1.937 0.380 1.094 2.257 sum -11.610 0.229 -8.896 14.628 Atomic orbital electron populations 1.21660 0.94314 1.01370 1.02006 1.21869 0.96773 0.97459 0.99917 1.19658 0.91614 0.92091 0.89018 0.94715 1.21882 0.92428 1.37032 1.06534 0.93986 1.25762 0.95486 0.96210 1.00379 1.70053 1.09814 1.46678 1.31953 0.85935 0.79553 0.79667 0.77785 1.19386 1.23140 1.16910 1.62367 1.55902 1.03507 1.02062 1.22429 0.98704 0.88823 1.01767 1.20085 0.93278 0.99656 0.85479 1.25763 1.03973 1.00255 1.03469 1.83764 1.29855 1.25929 1.19428 1.28859 1.01759 0.93566 1.04137 1.66213 1.06450 1.28227 1.20041 1.20336 0.99556 0.96936 0.91922 1.20643 0.94955 0.96525 1.02781 0.92298 0.93614 0.91349 0.92597 0.94596 0.92688 0.90789 0.96533 0.91859 0.94368 0.90587 0.75049 0.90882 0.89965 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.84 71.98 0.71 -3.67 16 2 C -0.12 -4.90 4.85 30.59 0.15 -4.75 16 3 C 0.18 8.12 1.31 44.17 0.06 8.18 16 4 H 0.03 1.60 7.05 -2.38 -0.02 1.58 16 5 C -0.54 -28.90 7.84 25.60 0.20 -28.70 16 6 H 0.04 2.50 6.27 -2.91 -0.02 2.48 16 7 C 0.02 1.12 5.45 84.65 0.46 1.58 16 8 N -0.94 -57.53 13.96 21.45 0.30 -57.24 16 9 Si 0.94 43.78 24.40 68.60 1.67 45.45 16 10 H -0.27 -11.91 6.84 99.48 0.68 -11.22 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 12 H -0.25 -10.55 6.53 99.48 0.65 -9.90 16 13 N -0.52 -19.80 3.93 -906.03 -3.56 -23.36 16 14 C 0.03 1.13 7.72 127.69 0.99 2.11 16 15 C 0.15 5.44 4.19 85.56 0.36 5.80 16 16 C -0.21 -6.77 5.71 24.64 0.14 -6.63 16 17 S 0.16 3.83 23.22 -56.49 -1.31 2.52 16 18 C 0.01 0.32 12.23 130.65 1.60 1.92 16 19 N -0.49 -14.30 10.53 -191.56 -2.02 -16.32 16 20 C 0.04 1.39 6.15 41.52 0.26 1.64 16 21 C -0.09 -2.61 9.17 71.24 0.65 -1.95 16 22 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.07 2.14 7.57 -2.39 -0.02 2.13 16 25 H 0.06 2.23 6.21 -2.38 -0.01 2.22 16 26 H 0.04 1.52 3.22 -2.39 -0.01 1.52 16 27 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.07 2.40 5.47 -2.39 -0.01 2.39 16 29 H 0.02 0.66 6.65 -2.39 -0.02 0.64 16 30 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 31 H 0.04 1.62 6.01 -2.39 -0.01 1.61 16 32 H 0.08 2.96 5.94 -2.39 -0.01 2.94 16 33 H 0.23 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.08 2.42 3.96 -2.38 -0.01 2.41 16 Total: -1.00 -63.08 286.29 1.65 -61.43 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.00 Total: 12.01 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 5.57 Total: -24.49 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -5.28 Total: -96.92 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.67 Total: 45.45 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.31 Total: 2.52 kcal Total: -63.08 1.65 -61.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111669017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.728 kcal (2) G-P(sol) polarization free energy of solvation -63.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds