Wall clock time and date at job start Mon Mar 30 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46492 * 2 1 4 4 H 1.08998 * 109.47351 * 54.54035 * 3 2 1 5 5 C 1.50700 * 109.47172 * 294.54060 * 3 2 1 6 6 H 1.08000 * 119.99791 * 275.41112 * 5 3 2 7 7 C 1.37877 * 120.00322 * 95.41194 * 5 3 2 8 8 N 1.31516 * 119.99737 * 358.52998 * 7 5 3 9 9 Si 1.86795 * 120.00108 * 178.52792 * 7 5 3 10 10 H 1.48497 * 109.47167 * 90.00431 * 9 7 5 11 11 H 1.48506 * 109.46834 * 210.00247 * 9 7 5 12 12 H 1.48497 * 109.47297 * 330.00075 * 9 7 5 13 13 N 1.46906 * 109.46672 * 174.54172 * 3 2 1 14 14 C 1.46893 * 111.00030 * 53.80801 * 13 3 2 15 15 C 1.46899 * 110.99944 * 289.85478 * 13 3 2 16 16 C 1.50697 * 109.47059 * 196.03893 * 15 13 3 17 17 S 1.76195 * 126.03933 * 269.69253 * 16 15 13 18 18 C 1.70975 * 90.28219 * 179.97438 * 17 16 15 19 19 N 1.29022 * 110.17091 * 0.34566 * 18 17 16 20 20 C 1.31788 * 117.12358 * 359.72395 * 19 18 17 21 21 C 1.50692 * 122.75192 * 180.02562 * 20 19 18 22 22 H 1.09010 * 109.46602 * 184.01447 * 1 2 3 23 23 H 1.08999 * 109.47423 * 64.01555 * 1 2 3 24 24 H 1.08992 * 109.47205 * 304.00676 * 1 2 3 25 25 H 1.08999 * 109.46895 * 119.99618 * 2 1 3 26 26 H 1.08993 * 109.46976 * 239.99809 * 2 1 3 27 27 H 0.96991 * 119.99989 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.47091 * 60.00045 * 14 13 3 29 29 H 1.08997 * 109.47266 * 179.97438 * 14 13 3 30 30 H 1.09005 * 109.47595 * 299.99999 * 14 13 3 31 31 H 1.09007 * 109.47246 * 316.04052 * 15 13 3 32 32 H 1.08997 * 109.47019 * 76.03645 * 15 13 3 33 33 H 1.08003 * 124.91321 * 180.02562 * 18 17 16 34 34 H 1.09005 * 109.47120 * 270.00414 * 21 20 19 35 35 H 1.09007 * 109.46847 * 29.99881 * 21 20 19 36 36 H 1.08993 * 109.47588 * 150.00023 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5989 1.9838 0.8370 5 6 1.6509 2.1128 -1.2925 6 1 2.2710 1.9964 -2.1690 7 6 0.5035 2.8747 -1.3559 8 7 -0.2667 2.9929 -0.2965 9 14 0.0431 3.7391 -2.9465 10 1 -0.8053 2.8409 -3.7703 11 1 -0.7083 4.9816 -2.6351 12 1 1.2767 4.0821 -3.6986 13 7 3.5031 1.4447 0.1318 14 6 4.1255 0.6010 -0.8971 15 6 3.9110 1.0208 1.4778 16 6 5.3502 1.4025 1.7100 17 16 6.7578 0.4043 1.3539 18 6 7.7901 1.6401 1.9287 19 7 7.0945 2.6493 2.3316 20 6 5.7841 2.5552 2.2287 21 6 4.8512 3.6574 2.6599 22 1 -0.3633 -1.0253 0.0720 23 1 -0.3634 0.4502 -0.9237 24 1 -0.3633 0.5747 0.8518 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 -1.0737 3.5291 -0.3409 28 1 3.8630 0.9795 -1.8850 29 1 5.2086 0.6208 -0.7769 30 1 3.7668 -0.4231 -0.7932 31 1 3.2808 1.5112 2.2198 32 1 3.8029 -0.0602 1.5666 33 1 8.8683 1.5821 1.9557 34 1 4.5815 3.5163 3.7066 35 1 5.3468 4.6208 2.5391 36 1 3.9509 3.6324 2.0462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111669019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:19 Heat of formation + Delta-G solvation = 43.411147 kcal Electronic energy + Delta-G solvation = -17205.373402 eV Core-core repulsion = 14623.416750 eV Total energy + Delta-G solvation = -2581.956652 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62439 -37.42490 -33.45287 -31.79273 -30.81648 -28.57956 -26.54206 -25.89682 -24.48846 -23.27669 -22.02221 -19.26365 -18.36805 -17.76983 -16.36875 -15.51448 -15.07710 -14.52022 -13.94262 -13.83090 -13.68351 -13.25286 -13.18793 -12.36588 -12.25666 -12.16423 -11.99744 -11.62782 -11.28163 -10.99624 -10.94967 -10.71001 -10.69473 -10.35622 -10.32380 -9.85712 -9.48996 -9.41622 -9.03407 -8.90779 -8.49400 -8.36208 -7.18003 -6.04384 -4.05547 0.97996 1.61414 1.99591 3.06449 3.29489 3.37169 3.41429 4.40679 4.46653 4.97173 5.27811 5.37225 5.39224 5.51592 5.91826 5.96341 6.01827 6.14359 6.17606 6.21016 6.31781 6.35429 6.36281 6.60757 6.67247 6.69125 6.92071 7.17107 7.21093 7.45681 7.63751 7.81943 7.96784 8.02576 8.29691 8.54429 9.00442 9.57151 11.03804 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.027288 B = 0.006207 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.849802 B = 4510.044165 C = 4791.718478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.139 4.139 3 C 0.203 3.797 4 H 0.071 0.929 5 C -0.493 4.493 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.888 5.888 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.524 5.524 14 C 0.028 3.972 15 C 0.125 3.875 16 C -0.180 4.180 17 S 0.094 5.906 18 C 0.004 3.996 19 N -0.467 5.467 20 C 0.062 3.938 21 C -0.078 4.078 22 H 0.011 0.989 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.019 0.981 26 H 0.042 0.958 27 H 0.261 0.739 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.017 0.983 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.193 0.807 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 -4.843 4.414 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.179 4.179 3 C 0.098 3.902 4 H 0.088 0.912 5 C -0.532 4.532 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.247 5.247 14 C -0.121 4.121 15 C -0.006 4.006 16 C -0.301 4.301 17 S 0.346 5.654 18 C -0.295 4.295 19 N -0.181 5.181 20 C -0.069 4.069 21 C -0.137 4.137 22 H 0.030 0.970 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.209 0.791 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.449 -4.781 4.215 12.240 hybrid contribution -0.880 0.230 -0.569 1.073 sum 9.569 -4.551 3.646 11.206 Atomic orbital electron populations 1.21402 0.95511 0.96900 1.03627 1.22239 0.97249 1.00898 0.97520 1.19679 0.79808 0.91060 0.99656 0.91152 1.20928 1.06968 1.29930 0.95336 0.92565 1.24875 0.96529 0.95822 0.96225 1.69928 1.14099 1.40243 1.28347 0.86626 0.78483 0.79208 0.83855 1.20855 1.21256 1.19939 1.62617 1.12349 1.50674 0.99057 1.22342 0.97391 0.94718 0.97659 1.20500 0.87350 0.97781 0.94963 1.25870 1.00047 0.97341 1.06833 1.83894 0.99058 1.22255 1.60197 1.28097 1.04362 0.93260 1.03747 1.66160 1.06226 1.27656 1.18015 1.20196 0.89371 0.95925 1.01443 1.20374 0.97537 0.94587 1.01206 0.96950 0.91723 0.92764 0.96274 0.93942 0.92957 0.90849 0.93838 0.96419 0.89166 0.94561 0.79063 0.91430 0.91188 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 8.72 37.16 0.32 -2.23 16 2 C -0.14 -2.99 4.54 -26.73 -0.12 -3.12 16 3 C 0.20 4.75 1.91 -68.86 -0.13 4.62 16 4 H 0.07 1.83 7.03 -51.93 -0.36 1.47 16 5 C -0.49 -12.77 7.60 -34.44 -0.26 -13.03 16 6 H 0.06 1.48 6.36 -52.49 -0.33 1.15 16 7 C 0.07 1.78 4.52 -17.82 -0.08 1.70 16 8 N -0.89 -23.90 11.55 55.43 0.64 -23.26 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.52 -10.85 4.65 -237.73 -1.10 -11.96 16 14 C 0.03 0.53 8.65 60.06 0.52 1.05 16 15 C 0.12 2.23 4.34 -4.98 -0.02 2.20 16 16 C -0.18 -2.98 5.50 -35.92 -0.20 -3.17 16 17 S 0.09 1.27 21.91 -107.50 -2.36 -1.08 16 18 C 0.00 0.05 12.23 51.58 0.63 0.68 16 19 N -0.47 -7.56 10.53 -11.90 -0.13 -7.68 16 20 C 0.06 1.04 6.74 -84.22 -0.57 0.47 16 21 C -0.08 -1.20 9.82 36.00 0.35 -0.85 16 22 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 23 H 0.06 1.56 6.67 -51.93 -0.35 1.21 16 24 H 0.05 1.24 7.97 -51.93 -0.41 0.83 16 25 H 0.02 0.38 6.85 -51.93 -0.36 0.02 16 26 H 0.04 0.91 6.66 -51.93 -0.35 0.56 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.07 1.50 6.48 -51.93 -0.34 1.16 16 29 H 0.04 0.76 6.20 -51.93 -0.32 0.43 16 30 H 0.02 0.32 6.34 -51.93 -0.33 -0.01 16 31 H 0.09 1.61 7.09 -51.93 -0.37 1.25 16 32 H 0.04 0.63 7.17 -51.93 -0.37 0.26 16 33 H 0.19 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.56 7.35 -51.93 -0.38 1.18 16 LS Contribution 297.03 15.07 4.48 4.48 Total: -1.00 -27.54 297.03 -8.14 -35.68 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.10 Total: -0.27 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 0.45 Total: -11.68 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.59 Total: -42.90 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.36 Total: -1.08 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.54 -8.14 -35.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111669019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.095 kcal (2) G-P(sol) polarization free energy of solvation -27.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds