Wall clock time and date at job start Mon Mar 30 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46881 * 2 1 4 4 C 1.46903 * 110.99878 * 160.18294 * 3 2 1 5 5 C 1.53005 * 109.46612 * 287.59998 * 4 3 2 6 6 C 1.50706 * 109.46651 * 182.56238 * 5 4 3 7 7 N 1.29026 * 124.91418 * 89.70261 * 6 5 4 8 8 C 1.31787 * 117.12454 * 179.81193 * 7 6 5 9 9 C 1.33638 * 114.49572 * 0.46862 * 8 7 6 10 10 S 1.70976 * 124.91843 * 270.00282 * 6 5 4 11 11 C 1.46903 * 111.00019 * 284.13173 * 3 2 1 12 12 H 1.09002 * 109.46983 * 195.53063 * 11 3 2 13 13 C 1.52996 * 109.47224 * 315.53492 * 11 3 2 14 14 C 1.50699 * 109.46920 * 75.53895 * 11 3 2 15 15 H 1.08003 * 120.00062 * 359.30423 * 14 11 3 16 16 C 1.37876 * 120.00078 * 179.31387 * 14 11 3 17 17 N 1.31511 * 119.99822 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00087 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47276 * 89.99886 * 18 16 14 20 20 H 1.48502 * 109.47350 * 209.99976 * 18 16 14 21 21 H 1.48503 * 109.47334 * 329.99518 * 18 16 14 22 22 H 1.08998 * 109.47114 * 310.14937 * 1 2 3 23 23 H 1.09005 * 109.46896 * 70.15155 * 1 2 3 24 24 H 1.09002 * 109.46891 * 190.14724 * 1 2 3 25 25 H 1.09002 * 109.46978 * 239.99972 * 2 1 3 26 26 H 1.08991 * 109.46997 * 119.99635 * 2 1 3 27 27 H 1.08997 * 109.47338 * 47.60060 * 4 3 2 28 28 H 1.09004 * 109.46908 * 167.60404 * 4 3 2 29 29 H 1.08996 * 109.47468 * 302.56464 * 5 4 3 30 30 H 1.08997 * 109.46945 * 62.57122 * 5 4 3 31 31 H 1.07996 * 122.74809 * 180.22143 * 8 7 6 32 32 H 1.08004 * 126.03175 * 179.71641 * 9 8 7 33 33 H 1.08997 * 109.46950 * 310.12607 * 13 11 3 34 34 H 1.09005 * 109.46756 * 190.12416 * 13 11 3 35 35 H 1.09003 * 109.47104 * 70.12736 * 13 11 3 36 36 H 0.97005 * 120.00186 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4116 1.4513 0.4650 5 6 3.4581 1.1967 1.9730 6 6 4.8781 1.3268 2.4607 7 7 5.4197 2.4228 2.8734 8 6 6.6748 2.3605 3.2703 9 6 7.2254 1.1463 3.1783 10 16 6.0069 0.0451 2.5403 11 6 1.8794 1.9929 -1.3299 12 1 2.4861 2.8970 -1.3819 13 6 2.3493 1.0013 -2.3961 14 6 0.4339 2.3435 -1.5721 15 1 -0.3083 2.1253 -0.8184 16 6 0.0588 2.9427 -2.7558 17 7 0.9626 3.2088 -3.6734 18 14 -1.7331 3.3766 -3.0562 19 1 -1.9986 4.7523 -2.5640 20 1 -2.0221 3.3071 -4.5112 21 1 -2.6033 2.4153 -2.3324 22 1 -0.3633 0.6626 0.7855 23 1 -0.3633 0.3489 -0.9667 24 1 -0.3633 -1.0116 0.1811 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8899 27 1 4.0031 0.6942 -0.0498 28 1 3.8196 2.4390 0.2504 29 1 2.8300 1.9262 2.4842 30 1 3.0925 0.1916 2.1832 31 1 7.2153 3.2210 3.6358 32 1 8.2386 0.8861 3.4470 33 1 3.3292 0.6106 -2.1222 34 1 2.4162 1.5079 -3.3590 35 1 1.6370 0.1792 -2.4668 36 1 0.6988 3.6307 -4.5061 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121135107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:40 Heat of formation + Delta-G solvation = 51.754868 kcal Electronic energy + Delta-G solvation = -16822.105797 eV Core-core repulsion = 14240.510956 eV Total energy + Delta-G solvation = -2581.594841 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.62839 -37.73019 -33.56165 -32.17968 -30.02863 -29.36417 -27.29413 -25.31538 -24.40141 -22.45477 -21.68614 -19.81608 -18.72206 -17.92697 -16.35524 -15.74277 -15.15026 -14.69336 -14.51285 -14.21936 -13.74030 -13.45379 -13.02573 -12.51314 -12.13432 -11.83579 -11.67872 -11.52538 -11.30283 -11.23008 -10.87313 -10.74470 -10.49124 -10.33657 -10.28809 -9.89931 -9.59154 -9.41410 -9.33503 -8.87041 -8.74201 -8.31646 -7.17110 -5.96410 -3.96723 0.71900 1.37315 1.76217 2.86757 3.34407 3.40981 3.43704 4.18040 4.46019 4.91902 5.09939 5.29474 5.36070 5.37435 5.47127 5.60577 5.84775 5.94178 6.16877 6.18480 6.37149 6.38644 6.44645 6.59281 6.71974 6.86738 6.91218 7.13747 7.26731 7.49767 7.71159 7.79210 7.91937 8.20700 8.37409 8.62479 9.07867 9.66131 11.11871 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.036719 B = 0.004771 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.367127 B = 5867.515394 C = 6081.013937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 N -0.530 5.530 4 C 0.066 3.934 5 C -0.043 4.043 6 C 0.074 3.926 7 N -0.477 5.477 8 C 0.042 3.958 9 C -0.273 4.273 10 S 0.105 5.895 11 C 0.211 3.789 12 H 0.036 0.964 13 C -0.163 4.163 14 C -0.495 4.495 15 H 0.074 0.926 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.274 1.274 22 H 0.053 0.947 23 H 0.086 0.914 24 H 0.030 0.970 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.025 0.975 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.004 0.996 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.351 -6.944 11.142 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 N -0.254 5.254 4 C -0.065 4.065 5 C -0.085 4.085 6 C -0.204 4.204 7 N -0.191 5.191 8 C -0.109 4.109 9 C -0.412 4.412 10 S 0.359 5.641 11 C 0.105 3.895 12 H 0.054 0.946 13 C -0.223 4.223 14 C -0.534 4.534 15 H 0.092 0.908 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.199 1.199 22 H 0.072 0.928 23 H 0.104 0.896 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.190 0.810 32 H 0.191 0.809 33 H 0.023 0.977 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.730 -7.166 11.046 15.798 hybrid contribution 0.307 0.591 -0.502 0.833 sum 9.037 -6.575 10.544 15.365 Atomic orbital electron populations 1.22008 0.95254 0.98633 1.04563 1.22011 0.96630 0.90026 0.98743 1.62345 1.15832 1.16833 1.30373 1.21936 0.91982 1.01088 0.91448 1.20420 0.86454 1.03708 0.97880 1.27351 1.01979 0.90627 1.00485 1.66327 1.10841 1.27905 1.14045 1.21845 0.90349 0.97657 1.01071 1.27006 1.05029 0.96945 1.12196 1.84034 1.04670 1.16029 1.59347 1.19354 0.97364 0.92207 0.80561 0.94597 1.22347 0.95697 1.00032 1.04186 1.21325 0.92840 1.37960 1.01277 0.90835 1.24951 0.97308 0.95959 0.96293 1.69921 1.32881 1.43266 1.07581 0.86573 0.85346 0.78872 0.77053 1.20793 1.21538 1.19874 0.92810 0.89565 0.95110 0.94391 0.93748 0.95726 0.90866 0.87843 0.89956 0.80957 0.80882 0.97737 0.90190 0.94355 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.61 37.16 0.32 -2.44 16 2 C 0.05 1.00 5.17 -3.82 -0.02 0.99 16 3 N -0.53 -10.99 4.35 -228.03 -0.99 -11.98 16 4 C 0.07 1.19 4.62 -3.82 -0.02 1.17 16 5 C -0.04 -0.65 5.83 -27.88 -0.16 -0.81 16 6 C 0.07 1.07 6.64 -13.45 -0.09 0.98 16 7 N -0.48 -7.30 10.54 -11.86 -0.13 -7.43 16 8 C 0.04 0.51 11.35 -19.18 -0.22 0.29 16 9 C -0.27 -2.88 11.36 29.12 0.33 -2.55 16 10 S 0.11 1.23 23.18 -107.50 -2.49 -1.26 16 11 C 0.21 5.20 2.26 -68.87 -0.16 5.04 16 12 H 0.04 0.99 7.65 -51.93 -0.40 0.59 16 13 C -0.16 -3.88 7.57 37.16 0.28 -3.60 16 14 C -0.50 -13.12 6.76 -34.44 -0.23 -13.36 16 15 H 0.07 1.93 5.61 -52.48 -0.29 1.63 16 16 C 0.06 1.51 5.31 -17.82 -0.09 1.41 16 17 N -0.90 -25.42 11.50 55.43 0.64 -24.79 16 18 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H 0.05 1.02 7.99 -51.93 -0.41 0.60 16 23 H 0.09 1.86 5.68 -51.93 -0.30 1.57 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.74 5.43 -51.93 -0.28 0.46 16 26 H 0.04 0.71 6.30 -51.93 -0.33 0.38 16 27 H 0.02 0.44 7.39 -51.93 -0.38 0.05 16 28 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 29 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.08 1.11 6.64 -51.93 -0.34 0.76 16 31 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.00 0.08 7.20 -51.93 -0.37 -0.29 16 34 H 0.08 2.10 6.46 -51.93 -0.34 1.76 16 35 H 0.04 0.89 6.67 -51.93 -0.35 0.55 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -28.67 297.30 -8.59 -37.26 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.02 Total: 0.41 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.06 Total: -12.87 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.48 Total: -44.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.49 Total: -1.26 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.67 -8.59 -37.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121135107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.019 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds