Wall clock time and date at job start Mon Mar 30 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46881 * 2 1 4 4 C 1.46903 * 110.99878 * 160.18294 * 3 2 1 5 5 C 1.53005 * 109.46612 * 287.59998 * 4 3 2 6 6 C 1.50706 * 109.46651 * 182.56238 * 5 4 3 7 7 N 1.29026 * 124.91418 * 89.70261 * 6 5 4 8 8 C 1.31787 * 117.12454 * 179.81193 * 7 6 5 9 9 C 1.33638 * 114.49572 * 0.46862 * 8 7 6 10 10 S 1.70976 * 124.91843 * 270.00282 * 6 5 4 11 11 C 1.46903 * 111.00019 * 284.13173 * 3 2 1 12 12 H 1.09002 * 109.46983 * 195.53063 * 11 3 2 13 13 C 1.52996 * 109.47224 * 315.53492 * 11 3 2 14 14 C 1.50699 * 109.46920 * 75.53895 * 11 3 2 15 15 H 1.08003 * 120.00062 * 359.30423 * 14 11 3 16 16 C 1.37876 * 120.00078 * 179.31387 * 14 11 3 17 17 N 1.31511 * 119.99822 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00087 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47276 * 89.99886 * 18 16 14 20 20 H 1.48502 * 109.47350 * 209.99976 * 18 16 14 21 21 H 1.48503 * 109.47334 * 329.99518 * 18 16 14 22 22 H 1.08998 * 109.47114 * 310.14937 * 1 2 3 23 23 H 1.09005 * 109.46896 * 70.15155 * 1 2 3 24 24 H 1.09002 * 109.46891 * 190.14724 * 1 2 3 25 25 H 1.09002 * 109.46978 * 239.99972 * 2 1 3 26 26 H 1.08991 * 109.46997 * 119.99635 * 2 1 3 27 27 H 1.08997 * 109.47338 * 47.60060 * 4 3 2 28 28 H 1.09004 * 109.46908 * 167.60404 * 4 3 2 29 29 H 1.08996 * 109.47468 * 302.56464 * 5 4 3 30 30 H 1.08997 * 109.46945 * 62.57122 * 5 4 3 31 31 H 1.07996 * 122.74809 * 180.22143 * 8 7 6 32 32 H 1.08004 * 126.03175 * 179.71641 * 9 8 7 33 33 H 1.08997 * 109.46950 * 310.12607 * 13 11 3 34 34 H 1.09005 * 109.46756 * 190.12416 * 13 11 3 35 35 H 1.09003 * 109.47104 * 70.12736 * 13 11 3 36 36 H 0.97005 * 120.00186 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4116 1.4513 0.4650 5 6 3.4581 1.1967 1.9730 6 6 4.8781 1.3268 2.4607 7 7 5.4197 2.4228 2.8734 8 6 6.6748 2.3605 3.2703 9 6 7.2254 1.1463 3.1783 10 16 6.0069 0.0451 2.5403 11 6 1.8794 1.9929 -1.3299 12 1 2.4861 2.8970 -1.3819 13 6 2.3493 1.0013 -2.3961 14 6 0.4339 2.3435 -1.5721 15 1 -0.3083 2.1253 -0.8184 16 6 0.0588 2.9427 -2.7558 17 7 0.9626 3.2088 -3.6734 18 14 -1.7331 3.3766 -3.0562 19 1 -1.9986 4.7523 -2.5640 20 1 -2.0221 3.3071 -4.5112 21 1 -2.6033 2.4153 -2.3324 22 1 -0.3633 0.6626 0.7855 23 1 -0.3633 0.3489 -0.9667 24 1 -0.3633 -1.0116 0.1811 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8899 27 1 4.0031 0.6942 -0.0498 28 1 3.8196 2.4390 0.2504 29 1 2.8300 1.9262 2.4842 30 1 3.0925 0.1916 2.1832 31 1 7.2153 3.2210 3.6358 32 1 8.2386 0.8861 3.4470 33 1 3.3292 0.6106 -2.1222 34 1 2.4162 1.5079 -3.3590 35 1 1.6370 0.1792 -2.4668 36 1 0.6988 3.6307 -4.5061 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121135107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:40 Heat of formation + Delta-G solvation = 33.700397 kcal Electronic energy + Delta-G solvation = -16822.888698 eV Core-core repulsion = 14240.510956 eV Total energy + Delta-G solvation = -2582.377742 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.63596 -39.37368 -35.22023 -33.78049 -31.60894 -30.76402 -28.70617 -27.34857 -25.57525 -23.96445 -23.22475 -20.80873 -20.45416 -18.93724 -18.34270 -17.14361 -16.48314 -16.15694 -15.86422 -15.75207 -15.09203 -14.76433 -14.49138 -13.91815 -13.75434 -13.53943 -13.22983 -12.99802 -12.87763 -12.71102 -12.48078 -12.40241 -12.20511 -12.13693 -11.88374 -11.70232 -11.07128 -10.77906 -10.55830 -10.39588 -10.34588 -9.79304 -8.84327 -8.04139 -6.10282 -0.23329 0.44916 0.83220 1.45127 1.46492 1.55871 1.89914 2.47382 3.09815 3.25915 3.55600 4.00803 4.16297 4.30916 4.40452 4.42480 4.55791 4.59318 4.70560 4.81158 4.83651 4.91020 5.00051 5.05529 5.12343 5.18278 5.28437 5.39641 5.52045 5.69829 5.83016 5.88439 6.29990 6.57255 6.76938 6.84401 7.00867 7.56251 9.03268 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.036719 B = 0.004771 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.367127 B = 5867.515394 C = 6081.013937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 N -0.539 5.539 4 C 0.073 3.927 5 C -0.030 4.030 6 C 0.039 3.961 7 N -0.510 5.510 8 C 0.017 3.983 9 C -0.253 4.253 10 S 0.143 5.857 11 C 0.215 3.785 12 H -0.004 1.004 13 C -0.147 4.147 14 C -0.500 4.500 15 H 0.074 0.926 16 C 0.006 3.994 17 N -0.928 5.928 18 Si 0.953 3.047 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.264 1.264 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.195 0.805 32 H 0.210 0.790 33 H 0.022 0.978 34 H 0.050 0.950 35 H 0.039 0.961 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.924 -8.633 12.659 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 N -0.263 5.263 4 C -0.058 4.058 5 C -0.071 4.071 6 C -0.239 4.239 7 N -0.225 5.225 8 C -0.133 4.133 9 C -0.392 4.392 10 S 0.396 5.604 11 C 0.108 3.892 12 H 0.014 0.986 13 C -0.206 4.206 14 C -0.539 4.539 15 H 0.092 0.908 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.779 3.221 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.188 1.188 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.212 0.788 32 H 0.227 0.773 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.298 -8.866 12.583 17.983 hybrid contribution 0.258 1.077 -0.904 1.430 sum 9.555 -7.789 11.679 16.981 Atomic orbital electron populations 1.21908 0.95281 1.00321 1.02441 1.22109 0.96620 0.88679 1.00064 1.62254 1.17747 1.18386 1.27889 1.21860 0.90316 0.99751 0.93830 1.20174 0.87497 1.04347 0.95072 1.27136 1.02301 0.91981 1.02444 1.66299 1.12575 1.29123 1.14537 1.22224 0.89722 0.99320 1.02037 1.27490 1.06115 0.95910 1.09685 1.83838 1.03703 1.14502 1.58367 1.19099 0.95803 0.91290 0.82981 0.98623 1.22119 0.96644 0.99448 1.02370 1.21625 0.93790 1.37312 1.01132 0.90765 1.25695 1.01011 0.96177 0.96289 1.70062 1.34602 1.44259 1.07928 0.85626 0.81049 0.78551 0.76835 1.20812 1.21465 1.18778 0.93320 0.92779 0.91897 0.95008 0.90294 0.95144 0.93587 0.89294 0.87920 0.78838 0.77321 0.95955 0.93075 0.94181 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.61 71.98 0.62 -4.47 16 2 C 0.05 1.88 5.17 86.31 0.45 2.32 16 3 N -0.54 -22.36 4.35 -875.37 -3.81 -26.17 16 4 C 0.07 2.62 4.62 86.30 0.40 3.02 16 5 C -0.03 -0.87 5.83 29.85 0.17 -0.70 16 6 C 0.04 1.08 6.64 88.52 0.59 1.67 16 7 N -0.51 -15.28 10.54 -191.44 -2.02 -17.30 16 8 C 0.02 0.38 11.35 83.66 0.95 1.33 16 9 C -0.25 -4.54 11.36 66.78 0.76 -3.78 16 10 S 0.14 2.96 23.18 -56.49 -1.31 1.65 16 11 C 0.22 10.88 2.26 44.17 0.10 10.98 16 12 H 0.00 -0.24 7.65 -2.39 -0.02 -0.26 16 13 C -0.15 -7.06 7.57 71.98 0.54 -6.52 16 14 C -0.50 -26.96 6.76 25.60 0.17 -26.78 16 15 H 0.07 3.92 5.61 -2.91 -0.02 3.91 16 16 C 0.01 0.32 5.31 84.65 0.45 0.77 16 17 N -0.93 -54.04 11.50 21.45 0.25 -53.80 16 18 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 22 H 0.05 1.77 7.99 -2.39 -0.02 1.75 16 23 H 0.05 2.29 5.68 -2.38 -0.01 2.28 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 25 H 0.03 1.18 5.43 -2.39 -0.01 1.17 16 26 H 0.08 2.27 6.30 -2.39 -0.02 2.26 16 27 H 0.03 1.05 7.39 -2.39 -0.02 1.04 16 28 H 0.05 1.89 7.68 -2.39 -0.02 1.87 16 29 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.10 2.51 6.64 -2.39 -0.02 2.50 16 31 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.21 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 34 H 0.05 2.75 6.46 -2.38 -0.02 2.74 16 35 H 0.04 1.87 6.67 -2.39 -0.02 1.86 16 36 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -63.24 297.30 1.40 -61.84 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.07 Total: 9.98 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 5.20 Total: -22.17 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -5.58 Total: -97.27 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.31 Total: 1.65 kcal Total: -63.24 1.40 -61.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121135107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.541 kcal (2) G-P(sol) polarization free energy of solvation -63.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds