Wall clock time and date at job start Mon Mar 30 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47674 * 2 1 4 4 C 1.46901 * 110.99847 * 76.04194 * 3 2 1 5 5 C 1.52998 * 109.47154 * 67.26820 * 4 3 2 6 6 C 1.50699 * 109.47309 * 177.24925 * 5 4 3 7 7 N 1.29020 * 124.91855 * 89.69100 * 6 5 4 8 8 C 1.31784 * 117.12647 * 180.26424 * 7 6 5 9 9 C 1.33641 * 114.49613 * 0.02562 * 8 7 6 10 10 S 1.70978 * 124.91067 * 269.99410 * 6 5 4 11 11 C 1.46895 * 111.00436 * 200.00109 * 3 2 1 12 12 H 1.09002 * 109.47082 * 296.04523 * 11 3 2 13 13 C 1.53006 * 109.47354 * 176.04516 * 11 3 2 14 14 C 1.50700 * 109.47270 * 56.04326 * 11 3 2 15 15 H 1.08006 * 119.99794 * 0.02562 * 14 11 3 16 16 C 1.37875 * 120.00396 * 180.02562 * 14 11 3 17 17 N 1.31516 * 119.99564 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00416 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47337 * 89.99871 * 18 16 14 20 20 H 1.48502 * 109.47067 * 210.00163 * 18 16 14 21 21 H 1.48504 * 109.47157 * 329.99853 * 18 16 14 22 22 H 1.08998 * 109.47162 * 174.63690 * 1 2 3 23 23 H 1.08996 * 109.46865 * 294.63779 * 1 2 3 24 24 H 1.09000 * 109.47204 * 54.63213 * 1 2 3 25 25 H 1.09001 * 109.47099 * 239.99733 * 2 1 3 26 26 H 1.09002 * 109.47370 * 120.00091 * 2 1 3 27 27 H 1.09000 * 109.47299 * 307.26356 * 4 3 2 28 28 H 1.09004 * 109.46946 * 187.26467 * 4 3 2 29 29 H 1.09003 * 109.47065 * 57.24369 * 5 4 3 30 30 H 1.09004 * 109.46362 * 297.24689 * 5 4 3 31 31 H 1.07993 * 122.75359 * 180.02562 * 8 7 6 32 32 H 1.08005 * 126.03471 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.46977 * 59.99605 * 13 11 3 34 34 H 1.08994 * 109.47191 * 180.02562 * 13 11 3 35 35 H 1.09000 * 109.46622 * 299.99703 * 13 11 3 36 36 H 0.97002 * 120.00152 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8834 1.9915 1.3310 5 6 2.8344 1.2971 2.3078 6 6 2.7439 1.9633 3.6564 7 7 1.9231 1.6263 4.5931 8 6 1.9721 2.3191 5.7131 9 6 2.8848 3.2952 5.7213 10 16 3.7091 3.2802 4.1641 11 6 3.4102 1.4517 -0.4691 12 1 4.0547 0.9150 0.2272 13 6 3.8519 2.9144 -0.5490 14 6 3.5107 0.8213 -1.8342 15 1 2.6296 0.4123 -2.3063 16 6 4.7274 0.7665 -2.4805 17 7 5.8004 1.2640 -1.9053 18 14 4.8518 -0.0142 -4.1729 19 1 4.6262 1.0209 -5.2133 20 1 6.2030 -0.6051 -4.3473 21 1 3.8252 -1.0793 -4.3034 22 1 -0.3633 -1.0231 -0.0961 23 1 -0.3633 0.4284 0.9341 24 1 -0.3633 0.5948 -0.8380 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.8570 1.8765 1.6793 28 1 2.1312 3.0515 1.2743 29 1 3.8558 1.3699 1.9343 30 1 2.5558 0.2474 2.4016 31 1 1.3276 2.1148 6.5552 32 1 3.0824 3.9735 6.5383 33 1 3.7792 3.3703 0.4384 34 1 4.8835 2.9639 -0.8974 35 1 3.2074 3.4509 -1.2453 36 1 6.6565 1.2252 -2.3597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121135269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:43 Heat of formation + Delta-G solvation = 47.329268 kcal Electronic energy + Delta-G solvation = -16992.069043 eV Core-core repulsion = 14410.282293 eV Total energy + Delta-G solvation = -2581.786750 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57391 -37.78677 -33.27303 -32.24210 -30.56992 -28.97230 -27.10485 -25.60968 -24.29487 -22.85085 -21.08865 -19.84133 -18.81539 -17.88226 -16.34577 -15.69627 -15.33440 -14.64068 -14.35884 -14.06664 -13.87048 -13.35426 -12.94494 -12.61163 -12.19904 -12.17170 -11.89563 -11.37723 -11.26241 -11.04083 -10.94564 -10.64540 -10.62223 -10.37194 -10.06326 -9.86549 -9.64871 -9.48155 -9.31623 -8.87765 -8.82849 -8.42390 -7.14322 -6.02885 -4.06746 0.82212 1.49054 1.89715 2.93890 3.30514 3.37193 3.40137 4.29301 4.40822 4.95169 5.17897 5.28588 5.30446 5.43711 5.56596 5.65970 5.85155 5.95619 6.05000 6.13342 6.19051 6.34101 6.49828 6.52516 6.76391 6.79759 6.93774 7.04829 7.15224 7.50868 7.73309 7.81316 7.86083 8.19662 8.31374 8.58265 8.99450 9.58113 11.03881 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.005749 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.173708 B = 4869.290092 C = 5567.265040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.526 5.526 4 C 0.066 3.934 5 C -0.091 4.091 6 C 0.077 3.923 7 N -0.486 5.486 8 C 0.040 3.960 9 C -0.279 4.279 10 S 0.122 5.878 11 C 0.206 3.794 12 H 0.005 0.995 13 C -0.134 4.134 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.171 0.829 32 H 0.173 0.827 33 H 0.007 0.993 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 2.750 11.703 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 N -0.249 5.249 4 C -0.065 4.065 5 C -0.133 4.133 6 C -0.201 4.201 7 N -0.201 5.201 8 C -0.112 4.112 9 C -0.419 4.419 10 S 0.376 5.624 11 C 0.100 3.900 12 H 0.023 0.977 13 C -0.192 4.192 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.188 0.812 32 H 0.190 0.810 33 H 0.026 0.974 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.576 3.183 10.763 12.121 hybrid contribution 0.128 -0.926 0.604 1.113 sum -4.448 2.257 11.367 12.413 Atomic orbital electron populations 1.21776 0.96776 1.00209 1.01317 1.22102 0.94137 0.90494 1.01455 1.62409 1.25272 1.17313 1.19866 1.22207 0.97400 0.98996 0.87900 1.21249 1.04227 1.00767 0.87102 1.27296 0.94982 0.97717 1.00077 1.66338 1.23417 1.29496 1.00823 1.21780 0.99452 0.93424 0.96515 1.27027 1.04946 1.07406 1.02507 1.84256 1.38016 1.32131 1.07987 1.19335 0.81732 0.93815 0.95105 0.97721 1.21844 1.03665 0.96852 0.96818 1.21156 0.94156 1.37349 1.01621 0.91784 1.24915 0.95747 0.95597 0.97884 1.69882 0.99353 1.45888 1.38068 0.86539 0.77187 0.79489 0.84439 1.20690 1.21379 1.19928 0.93535 0.93846 0.92320 0.89073 0.95887 0.91601 0.90990 0.88379 0.88977 0.81200 0.81000 0.97407 0.89645 0.94653 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.94 37.16 0.37 -1.95 16 2 C 0.05 0.89 5.39 -3.83 -0.02 0.87 16 3 N -0.53 -10.92 4.50 -228.04 -1.03 -11.95 16 4 C 0.07 1.19 4.79 -3.82 -0.02 1.17 16 5 C -0.09 -1.57 5.15 -27.88 -0.14 -1.71 16 6 C 0.08 1.23 6.64 -13.46 -0.09 1.14 16 7 N -0.49 -7.68 10.54 -11.87 -0.13 -7.81 16 8 C 0.04 0.51 11.35 -19.18 -0.22 0.29 16 9 C -0.28 -3.23 11.37 29.12 0.33 -2.90 16 10 S 0.12 1.66 23.18 -107.50 -2.49 -0.83 16 11 C 0.21 4.94 1.59 -68.86 -0.11 4.83 16 12 H 0.01 0.14 6.18 -51.93 -0.32 -0.18 16 13 C -0.13 -3.15 8.73 37.16 0.32 -2.82 16 14 C -0.50 -13.34 7.64 -34.44 -0.26 -13.60 16 15 H 0.06 1.70 6.59 -52.48 -0.35 1.35 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 17 N -0.89 -24.73 11.32 55.43 0.63 -24.11 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.04 0.67 7.01 -51.93 -0.36 0.31 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.09 1.94 5.79 -51.93 -0.30 1.63 16 26 H 0.02 0.43 6.05 -51.93 -0.31 0.11 16 27 H 0.07 1.14 6.80 -51.93 -0.35 0.79 16 28 H 0.07 1.31 6.49 -51.93 -0.34 0.97 16 29 H 0.10 1.84 6.20 -51.93 -0.32 1.52 16 30 H 0.09 1.61 6.44 -51.93 -0.33 1.28 16 31 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.01 0.15 6.48 -51.93 -0.34 -0.19 16 34 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 297.25 15.07 4.48 4.48 Total: -1.00 -27.99 297.25 -8.38 -36.38 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.89 Total: 1.11 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 0.07 Total: -13.18 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.52 Total: -43.86 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.49 Total: -0.83 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.99 -8.38 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121135269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.705 kcal (2) G-P(sol) polarization free energy of solvation -27.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds