Wall clock time and date at job start Mon Mar 30 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47674 * 2 1 4 4 C 1.46901 * 110.99847 * 76.04194 * 3 2 1 5 5 C 1.52998 * 109.47154 * 67.26820 * 4 3 2 6 6 C 1.50699 * 109.47309 * 177.24925 * 5 4 3 7 7 N 1.29020 * 124.91855 * 89.69100 * 6 5 4 8 8 C 1.31784 * 117.12647 * 180.26424 * 7 6 5 9 9 C 1.33641 * 114.49613 * 0.02562 * 8 7 6 10 10 S 1.70978 * 124.91067 * 269.99410 * 6 5 4 11 11 C 1.46895 * 111.00436 * 200.00109 * 3 2 1 12 12 H 1.09002 * 109.47082 * 296.04523 * 11 3 2 13 13 C 1.53006 * 109.47354 * 176.04516 * 11 3 2 14 14 C 1.50700 * 109.47270 * 56.04326 * 11 3 2 15 15 H 1.08006 * 119.99794 * 0.02562 * 14 11 3 16 16 C 1.37875 * 120.00396 * 180.02562 * 14 11 3 17 17 N 1.31516 * 119.99564 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00416 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47337 * 89.99871 * 18 16 14 20 20 H 1.48502 * 109.47067 * 210.00163 * 18 16 14 21 21 H 1.48504 * 109.47157 * 329.99853 * 18 16 14 22 22 H 1.08998 * 109.47162 * 174.63690 * 1 2 3 23 23 H 1.08996 * 109.46865 * 294.63779 * 1 2 3 24 24 H 1.09000 * 109.47204 * 54.63213 * 1 2 3 25 25 H 1.09001 * 109.47099 * 239.99733 * 2 1 3 26 26 H 1.09002 * 109.47370 * 120.00091 * 2 1 3 27 27 H 1.09000 * 109.47299 * 307.26356 * 4 3 2 28 28 H 1.09004 * 109.46946 * 187.26467 * 4 3 2 29 29 H 1.09003 * 109.47065 * 57.24369 * 5 4 3 30 30 H 1.09004 * 109.46362 * 297.24689 * 5 4 3 31 31 H 1.07993 * 122.75359 * 180.02562 * 8 7 6 32 32 H 1.08005 * 126.03471 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.46977 * 59.99605 * 13 11 3 34 34 H 1.08994 * 109.47191 * 180.02562 * 13 11 3 35 35 H 1.09000 * 109.46622 * 299.99703 * 13 11 3 36 36 H 0.97002 * 120.00152 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8834 1.9915 1.3310 5 6 2.8344 1.2971 2.3078 6 6 2.7439 1.9633 3.6564 7 7 1.9231 1.6263 4.5931 8 6 1.9721 2.3191 5.7131 9 6 2.8848 3.2952 5.7213 10 16 3.7091 3.2802 4.1641 11 6 3.4102 1.4517 -0.4691 12 1 4.0547 0.9150 0.2272 13 6 3.8519 2.9144 -0.5490 14 6 3.5107 0.8213 -1.8342 15 1 2.6296 0.4123 -2.3063 16 6 4.7274 0.7665 -2.4805 17 7 5.8004 1.2640 -1.9053 18 14 4.8518 -0.0142 -4.1729 19 1 4.6262 1.0209 -5.2133 20 1 6.2030 -0.6051 -4.3473 21 1 3.8252 -1.0793 -4.3034 22 1 -0.3633 -1.0231 -0.0961 23 1 -0.3633 0.4284 0.9341 24 1 -0.3633 0.5948 -0.8380 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.8570 1.8765 1.6793 28 1 2.1312 3.0515 1.2743 29 1 3.8558 1.3699 1.9343 30 1 2.5558 0.2474 2.4016 31 1 1.3276 2.1148 6.5552 32 1 3.0824 3.9735 6.5383 33 1 3.7792 3.3703 0.4384 34 1 4.8835 2.9639 -0.8974 35 1 3.2074 3.4509 -1.2453 36 1 6.6565 1.2252 -2.3597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121135269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:42 Heat of formation + Delta-G solvation = 30.052002 kcal Electronic energy + Delta-G solvation = -16992.818242 eV Core-core repulsion = 14410.282293 eV Total energy + Delta-G solvation = -2582.535948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70014 -39.37888 -35.16202 -33.60266 -32.27376 -30.32398 -28.59483 -27.44631 -25.74381 -24.23041 -22.75127 -21.01097 -20.40498 -19.11697 -18.17037 -17.31120 -16.63160 -16.02254 -15.99412 -15.41046 -15.38173 -14.70206 -14.40882 -14.18502 -13.72354 -13.65696 -13.42506 -12.88969 -12.82844 -12.54670 -12.47019 -12.36881 -12.31786 -12.19349 -11.83456 -11.67617 -11.24922 -10.80377 -10.61869 -10.46610 -10.37859 -9.92109 -8.80574 -8.07728 -6.17622 -0.24280 0.43043 0.86015 1.44156 1.45649 1.54805 1.88935 2.45169 3.12140 3.23049 3.44412 3.96661 4.14591 4.25278 4.38218 4.41753 4.55728 4.57649 4.61929 4.76605 4.81691 4.85653 5.07680 5.10213 5.14705 5.16589 5.27223 5.37384 5.45024 5.61474 5.76940 5.86700 6.31611 6.45276 6.77161 6.79418 6.96942 7.50670 8.98038 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.005749 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.173708 B = 4869.290092 C = 5567.265040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.046 3.954 3 N -0.534 5.534 4 C 0.073 3.927 5 C -0.077 4.077 6 C 0.047 3.953 7 N -0.502 5.502 8 C 0.021 3.979 9 C -0.252 4.252 10 S 0.122 5.878 11 C 0.212 3.788 12 H -0.019 1.019 13 C -0.121 4.121 14 C -0.517 4.517 15 H 0.058 0.942 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.954 3.046 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.269 1.269 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.025 0.975 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.202 0.798 32 H 0.211 0.789 33 H 0.029 0.971 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 3.158 13.021 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.082 4.082 3 N -0.257 5.257 4 C -0.058 4.058 5 C -0.119 4.119 6 C -0.231 4.231 7 N -0.218 5.218 8 C -0.129 4.129 9 C -0.391 4.391 10 S 0.375 5.625 11 C 0.106 3.894 12 H -0.001 1.001 13 C -0.180 4.180 14 C -0.556 4.556 15 H 0.076 0.924 16 C -0.185 4.185 17 N -0.558 5.558 18 Si 0.781 3.219 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.194 1.194 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.218 0.782 32 H 0.228 0.772 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.629 3.585 12.089 13.809 hybrid contribution 0.436 -1.014 0.333 1.153 sum -5.193 2.572 12.422 13.707 Atomic orbital electron populations 1.21677 0.94063 1.01637 1.01572 1.22107 0.96268 0.89502 1.00337 1.62361 1.23062 1.18376 1.21875 1.22141 0.98234 0.98580 0.86808 1.20893 1.02452 1.00372 0.88186 1.26923 0.96888 0.99419 0.99863 1.66310 1.23521 1.30293 1.01661 1.22269 1.00562 0.93619 0.96466 1.27479 1.02881 1.06827 1.01908 1.84251 1.37774 1.30858 1.09582 1.19107 0.83255 0.93369 0.93700 1.00131 1.21656 1.01780 0.96831 0.97705 1.21441 0.94039 1.37385 1.02721 0.92371 1.25627 0.95527 0.96160 1.01160 1.70003 0.99660 1.46818 1.39340 0.85607 0.77158 0.78729 0.80434 1.20390 1.21136 1.19384 0.91396 0.92866 0.92835 0.91521 0.95663 0.90467 0.91209 0.90599 0.89869 0.78164 0.77238 0.95218 0.92117 0.95323 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.94 71.98 0.72 -3.38 16 2 C 0.05 1.77 5.39 86.30 0.47 2.23 16 3 N -0.53 -22.36 4.50 -875.38 -3.94 -26.30 16 4 C 0.07 2.60 4.79 86.30 0.41 3.02 16 5 C -0.08 -2.68 5.15 29.85 0.15 -2.52 16 6 C 0.05 1.45 6.64 88.52 0.59 2.04 16 7 N -0.50 -15.11 10.54 -191.45 -2.02 -17.13 16 8 C 0.02 0.47 11.35 83.66 0.95 1.42 16 9 C -0.25 -4.97 11.37 66.78 0.76 -4.21 16 10 S 0.12 3.15 23.18 -56.49 -1.31 1.84 16 11 C 0.21 10.45 1.59 44.17 0.07 10.52 16 12 H -0.02 -1.00 6.18 -2.39 -0.01 -1.01 16 13 C -0.12 -5.83 8.73 71.98 0.63 -5.21 16 14 C -0.52 -27.91 7.64 25.60 0.20 -27.72 16 15 H 0.06 3.14 6.59 -2.91 -0.02 3.12 16 16 C 0.01 0.76 5.30 84.65 0.45 1.21 16 17 N -0.92 -51.94 11.32 21.45 0.24 -51.69 16 18 Si 0.95 43.33 29.54 68.60 2.03 45.35 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.05 1.54 7.01 -2.39 -0.02 1.53 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 25 H 0.07 2.89 5.79 -2.39 -0.01 2.87 16 26 H 0.03 0.95 6.05 -2.39 -0.01 0.94 16 27 H 0.08 2.60 6.80 -2.39 -0.02 2.58 16 28 H 0.07 2.51 6.49 -2.38 -0.02 2.50 16 29 H 0.08 2.96 6.20 -2.39 -0.01 2.95 16 30 H 0.08 2.98 6.44 -2.38 -0.02 2.96 16 31 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.03 1.24 6.48 -2.39 -0.02 1.23 16 34 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -60.41 297.25 1.46 -58.95 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.07 Total: 11.59 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 5.39 Total: -22.61 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -5.71 Total: -95.12 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.31 Total: 1.84 kcal Total: -60.41 1.46 -58.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121135269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.999 kcal (2) G-P(sol) polarization free energy of solvation -60.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds