Wall clock time and date at job start Mon Mar 30 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47413 * 2 1 4 4 H 1.08998 * 109.47425 * 305.64587 * 3 2 1 5 5 C 1.50693 * 109.47345 * 185.64556 * 3 2 1 6 6 H 1.08004 * 120.00026 * 240.00649 * 5 3 2 7 7 C 1.37880 * 120.00133 * 60.00149 * 5 3 2 8 8 N 1.31514 * 119.99866 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00082 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47275 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47356 * 119.99561 * 9 7 5 12 12 H 1.48495 * 109.47047 * 239.99830 * 9 7 5 13 13 N 1.46904 * 109.47142 * 65.64470 * 3 2 1 14 14 C 1.46895 * 111.00169 * 204.29677 * 13 3 2 15 15 H 1.09008 * 109.46783 * 326.20475 * 14 13 3 16 16 C 1.52993 * 109.47456 * 86.20669 * 14 13 3 17 17 C 1.50702 * 109.46948 * 206.20852 * 14 13 3 18 18 N 1.29021 * 124.91518 * 314.69186 * 17 14 13 19 19 C 1.31783 * 117.12439 * 179.81309 * 18 17 14 20 20 C 1.33645 * 114.49860 * 0.47366 * 19 18 17 21 21 C 1.50698 * 126.03707 * 179.78859 * 20 19 18 22 22 S 1.70976 * 124.91413 * 134.99678 * 17 14 13 23 23 H 1.08998 * 109.47004 * 53.70643 * 1 2 3 24 24 H 1.08999 * 109.47627 * 173.71147 * 1 2 3 25 25 H 1.09004 * 109.46651 * 293.71714 * 1 2 3 26 26 H 1.09000 * 109.46941 * 120.00506 * 2 1 3 27 27 H 1.08999 * 109.46885 * 240.00361 * 2 1 3 28 28 H 0.96999 * 119.99790 * 179.97438 * 8 7 5 29 29 H 1.00900 * 110.99765 * 328.24470 * 13 3 2 30 30 H 1.09000 * 109.47438 * 304.53400 * 16 14 13 31 31 H 1.08997 * 109.47511 * 64.53934 * 16 14 13 32 32 H 1.09003 * 109.47238 * 184.53901 * 16 14 13 33 33 H 1.07998 * 122.75211 * 180.22266 * 19 18 17 34 34 H 1.09000 * 109.47152 * 269.95618 * 21 20 19 35 35 H 1.08996 * 109.47399 * 29.96076 * 21 20 19 36 36 H 1.08997 * 109.47203 * 149.95863 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1398 6 1 4.1541 1.8863 0.6316 7 6 4.1302 0.8830 -1.2524 8 7 3.3831 0.3448 -2.1914 9 14 5.9901 0.8852 -1.4253 10 1 6.5965 1.5459 -0.2417 11 1 6.4804 -0.5135 -1.5172 12 1 6.3721 1.6255 -2.6546 13 7 1.6648 2.0946 1.2618 14 6 1.6006 3.5534 1.1017 15 1 2.3560 3.8737 0.3840 16 6 0.2132 3.9500 0.5932 17 6 1.8571 4.2163 2.4306 18 7 1.3252 3.8571 3.5498 19 6 1.6614 4.5446 4.6227 20 6 2.5172 5.5453 4.3941 21 6 3.0674 6.4947 5.4270 22 16 2.8892 5.5578 2.6719 23 1 -0.3633 0.6083 -0.8283 24 1 -0.3634 -1.0214 -0.1126 25 1 -0.3633 0.4134 0.9409 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.7979 -0.0500 -2.9743 29 1 0.7911 1.7304 1.6111 30 1 -0.0051 3.4084 -0.3272 31 1 -0.5345 3.7024 1.3466 32 1 0.1907 5.0222 0.3977 33 1 1.2738 4.3203 5.6055 34 1 2.4113 7.3611 5.5102 35 1 3.1257 5.9891 6.3908 36 1 4.0633 6.8206 5.1269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126126036.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:03 Heat of formation + Delta-G solvation = 30.483214 kcal Electronic energy + Delta-G solvation = -16836.126205 eV Core-core repulsion = 14253.608956 eV Total energy + Delta-G solvation = -2582.517249 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.41923 -36.83125 -33.74463 -32.09590 -31.38360 -28.72833 -26.74292 -26.07979 -24.27151 -22.87407 -21.65328 -19.66059 -18.46361 -17.69743 -16.19864 -15.29707 -14.89518 -14.59047 -14.15395 -14.02207 -13.47046 -13.17523 -12.91944 -12.80142 -12.55815 -12.50782 -11.98970 -11.71190 -11.45878 -11.13548 -10.97421 -10.86747 -10.74690 -10.57675 -9.95585 -9.81230 -9.62195 -9.16260 -9.08657 -8.90078 -8.41712 -8.35280 -7.23619 -5.97006 -4.01229 1.04151 1.64095 2.08780 3.20342 3.31423 3.39709 3.45406 4.45367 4.57987 5.05489 5.18815 5.22420 5.32342 5.43579 5.45588 5.62255 5.74806 5.79284 5.93607 6.11052 6.19718 6.20637 6.29123 6.39066 6.46384 6.63264 6.87946 7.09355 7.18266 7.48706 7.79104 7.92642 8.13313 8.29895 8.39482 8.76544 9.07337 9.64157 11.08119 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.006648 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.321122 B = 4210.997017 C = 5082.067410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.219 3.781 4 H 0.005 0.995 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.669 5.669 14 C 0.162 3.838 15 H 0.101 0.899 16 C -0.171 4.171 17 C 0.096 3.904 18 N -0.468 5.468 19 C 0.037 3.963 20 C -0.248 4.248 21 C -0.068 4.068 22 S 0.101 5.899 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.100 0.900 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.167 0.833 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 10.089 9.251 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.112 3.888 4 H 0.023 0.977 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.301 5.301 14 C 0.048 3.952 15 H 0.119 0.881 16 C -0.231 4.231 17 C -0.184 4.184 18 N -0.181 5.181 19 C -0.114 4.114 20 C -0.369 4.369 21 C -0.128 4.128 22 S 0.356 5.644 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.184 0.816 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.888 10.138 8.660 13.642 hybrid contribution -0.103 -0.241 0.239 0.355 sum -2.991 9.897 8.900 13.641 Atomic orbital electron populations 1.21888 0.99528 0.99762 0.99612 1.21747 0.91305 1.00120 1.03118 1.19234 0.95473 0.90121 0.84008 0.97694 1.21260 0.91279 1.36623 1.04158 0.92104 1.24939 0.98027 0.95581 0.95848 1.69879 1.34566 1.39486 1.09555 0.86528 0.85917 0.77664 0.77861 1.19778 1.21105 1.21194 1.60517 1.36702 0.99893 1.33020 1.20031 0.96920 0.90874 0.87410 0.88061 1.22468 0.97401 1.01418 1.01850 1.27412 0.96017 0.96077 0.98859 1.66185 1.26024 1.28161 0.97685 1.21681 0.98108 0.93222 0.98414 1.25831 1.07597 1.05718 0.97762 1.20124 1.00404 0.96709 0.95515 1.83941 1.46167 1.31504 1.02761 0.93876 0.94392 0.94474 0.94004 0.88173 0.93125 0.85260 0.91275 0.92273 0.92809 0.81609 0.91169 0.90692 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.63 37.16 0.36 -2.56 16 2 C -0.12 -2.92 5.37 -26.73 -0.14 -3.06 16 3 C 0.22 5.34 1.83 -68.87 -0.13 5.21 16 4 H 0.01 0.14 7.19 -51.93 -0.37 -0.23 16 5 C -0.49 -13.49 8.46 -34.44 -0.29 -13.78 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 8 N -0.89 -25.08 11.29 55.43 0.63 -24.46 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.67 -14.44 6.00 -102.17 -0.61 -15.06 16 14 C 0.16 3.10 2.89 -68.87 -0.20 2.90 16 15 H 0.10 2.08 7.60 -51.92 -0.39 1.68 16 16 C -0.17 -2.78 9.14 37.15 0.34 -2.44 16 17 C 0.10 1.72 6.25 -13.46 -0.08 1.63 16 18 N -0.47 -8.38 10.51 -11.86 -0.12 -8.50 16 19 C 0.04 0.56 11.25 -19.18 -0.22 0.34 16 20 C -0.25 -3.37 6.60 -35.92 -0.24 -3.60 16 21 C -0.07 -0.65 10.42 36.00 0.38 -0.27 16 22 S 0.10 1.53 23.18 -107.50 -2.49 -0.96 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.66 6.67 -51.93 -0.35 0.31 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.33 6.75 6.34 -39.29 -0.25 6.50 16 30 H 0.07 1.16 7.47 -51.93 -0.39 0.77 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -28.94 309.47 -8.69 -37.63 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.41 Total: 4.48 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.32 Total: -14.19 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.11 Total: -48.02 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.49 Total: -0.96 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.94 -8.69 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126126036.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.110 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds